RNA id: XM_026916478.2


Basic Information

Item Value
RNA id XM_026916478.2
length 3658
RNA type mRNA
GC content 0.45
exon number 11
gene id sept9a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18472384 ~ 18558892 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTCCTTTAAGAAAGTAGAGGGCTTGGATCTGTGGACAGCGGCAATCACTTAGCTCCCCCTCCCCCCGCTGCCTCCTAATTTGGGATTTGTTTGGAGGTCAGAGACTGGAGTGCATCTGTGAGAGATTGCCTTGCTGGGAAACAGAATACCGAGCTTTCATATTCACCCACAAAATGTCTGATTCCACTGTTAATGCTCATTTGGAGGGGATCATTTCAGACTTTGAAGCACTAAAAAGGTCATTCGAAGTAGAGGAGGTCGAATCGCCCACAAATCCTTCACAGCTTTCACGCCGAAATGTCAATCCCCTTCGCTCCTCTGCCACAAGCCGTTTTCACGACCTGGGATCCCGAAACTCAGAAAATTCCTCCAGACATGGCTCAGAATCCTCATCCAGTGGTCAACGCTCTCCCAAGAGCAGTGGTCGGCGCATAGAGCTTTCACGCCGCACTGAAATCTCCATCGACATCTCCTCCAAACAGGTGGACAGCTTACCCAGCCCTGGCATTCACCGCTTTGGCCTGAGGCGGCCGGAGGTCTCGCTTCATAACAGAATCGCAGAGCCGGGCTCACCCAGGAGGGCAGAGATCACCCTTTCACGAGCACAGGAACCATTAGCTGCCTATCGAAGAGCTGATGTGCCTTCCTCAGCTGCGAGAATTCCTGAACCTGCTCAGAGGAAGGCTGAGTCTCCTAGCACAGCGGAGAGTTCATCACTGCTAGGCAGAAGGATTGAGCCACTGGTTAACAGGCAGGTGGAGATTTCATCCCCATCCAAAGAGTCTGAGAACAGCTTCTCTTCAGAGGCCAGCATGACCCCCAGCTTCACTGAATATAAAACcccaccagcagctcaggagaaTTCTAGCCGAGCTACAGACAGGTCAGAGGTCATTTCCAGCCACAGttataataacagtaacagCAGTATGGCAGAGCCAGTAATTCCTGAAATGCCCCCGGCCGCGTGCCCAGAGAAGCCAAGTGTGGACTTCAACTATGTGGGCATTGATGCCATCTTGGAACAGATGAGGAGGAAGGCCATGAAGCAGGGCTTCGAACTTAACATCATGGTAGTGGGTCAGAGTGGTTTGGGCAAGTCCACACTGATGAACACCCTCTTCAAGTCCAAAGTAAGCCGAAAGTCAGTCATGGGAACAGCTGAGGAACGCATACCTAAAACTATTGAGATCAAGTCCATCAGCCATGACATTGAAGAGAAAGGTGTAAGGATGAAGCTGACCGTCATAGACACACCAGGCTTCGGTGATCAGATCAACAACGAGAACTGTTGGCAGCCAATAATGAAGTTCATTAATGAGCAGTATGAGCAGTACCTACAGGAGGAGATCAACATTAACAGGAAGAAGAGGATCCCTGACTCACGAGTTCACTGTTGCATATACTTTATCCCACCCACAGGACATTGtCTGAGGCCTTTGGATGTGGAGTTTATGAGACGTCTGAGTAAAGTGGTGAACATTGTCCCAGTTATCGCCAAGGCTGACACCTTGACCCTAGAGGAAAGAGACTTCTTCAAGAAGAAGATCAGGGAAGAACTGAGGGCCAACAACATTGACGTCTATCCTCAGAAGGAGTTTGATGAGGATACAGAGGACAGACTGATCAATGAGAAAATAAGGGAGATGATTCCGTTTGCAGTGGTGGGGAGTGACCAAGAGTACCAGGTCAACGGGAGGAGACTCTTAGGAAGGAAAACCAAATGGGGAACCATAGAAGTTGAGAATATCGCTCACTGTGAGTTCGCCTACTTGCGGGACCTCCTTATCAGAACCCACATGCAGAACATTAAGGACATCACCAGCAGTATCCACTACGAAATGTACCGTGTGCGTCGCCTTAACGAGAACAACATGCAGGCCAATGGGCTCTCTGAGCATCACCCAGCCTCACATGAGATCTAGTGCCTTcattccccctctctcttttatccctctctccactcctccaccCTGCACTCCACCTGCCACCCCATTCCACTCTTGCTTTTTCAGCCAGAGCCAGAGCCAGGATCAGCATGAAACCAAGTCGACTATTTCCCCTGAGAAGGGCATGTAATAACTTTATTCCCCACACAGTCCAGCACACTACCTTCCCATGCCTCCTGCCTGCCTTCTCTCACCCACAGACTGAAGACTGAagagtcttacacacacacacacacacacactgctcagtgCTGCCTCCCTGAGTGCATCTACACATCCTGTGTGTCTACTCAACTCACCCAGCTTATATTTCAGGTCTCTGACTAAACCGCAGATTTTCACATGGGTCAAGAGACCAAAATGCGGTGCTTGTAAAATGTATACACTTTTGCTTTGATATTACAATCAGCACTTCATATAAACACCCTCTTTTTTTGATTGTcttattgatttttgttttttgctgtgcTGCTTCATCAATAATGTGAAAGTCCAGGCTTTGTGGCTTTCTAAAGCCAATGCTGAAGCACCAGACCCTCACCTTCAGTCATTCAGGAGCCCATCTGCTTTATTGCACTTAGCAAACTTTAAGGAATAGGCCCAAATGCAGATGGATATGCATATGTGTTCTTTtgcatgagtgtgtggatgtatGCGTGTGCCCATGTATGACTGCTTTATTAAACAGTAATGTTATtagtaataatgaataaaagccAGTACTTCCAGTCAGTAATGACAATAGTGTTTGCTACACCAGTAATTACCTATGTAAGtccaaaatgcttttttttgtgtcattaaCAAACCTTGCTGTAACAGggagatacacacacaagtaactgcagtttaaaaattaaacatagtaTTTGGTTTATAAAGTGCATAGCTGACGAAGGGGActgttgtcctgtttttctggaaactttgtgtactaggAATAATTTTTTACTACatccaatacacacacaaacagaacaaTGAAGGGATTAAGTGTCTCCCTGTTACCGCAAATGACAATgacacaaaccaaaaaaaagcattctGAACTTGCACAAGTTGGTGGTGTTGCTGGTGTGACAGGAAATATTGGCTTTTATTCATTATCACATAGAACATTATTGTTTTAATAGCAGTCGTAAAGCCCAGTTGAAAGATCCAGTATAAATTTAGCTCCACTGAACATTCTTAAACATCTTTAAGCCCTGTTGTTTGTACTGGATGTGCATTGCATGGTGGTTTTCAGCTGATGACTGAATACGTGCTACAACGTGGGAGTCCATCATTTATTAGTTTAAACAGGATGTTAGACATTGATGTTGCAGTTAAGATTAGACACAACTTCCCCTTGTGTTGTATAATTATACCCAGTTTTACAGTTCTCTTCACATATAAAATCACTGCAATGTCAGTGACATTAAGTTCCAGTGTGTGCCAGTGTGCCTTATTATAtctctttttcttatttaccATTTAAAGAAGCCATGACTGAAGCATCATTACAAACCAAATCAAAGATTTCCCATATTGTATGGACTTAGAAATGTCTCCAGACCTTTCAACTGCTTTTAATCAGAGAAATGTCAGTCTGCTTATCCTGTGATGTATATTCATAGTAATTAAGTTGTTTCTACTGGTATTAAGAGTAACACAAATATCTTTGATATCtgctattttaatgaaataaagatgGAAAATGAAAGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252176 lncRNA upstream 29360 17964793 ~ 18464023 (+) False G212903
TU252175 lncRNA upstream 29360 18385812 ~ 18464023 (+) True G212903
TU252294 lncRNA upstream 65757 18425194 ~ 18427626 (+) False zgc:163143
TU252290 lncRNA upstream 65757 18425239 ~ 18427626 (+) False zgc:163143
TU252293 lncRNA upstream 67330 18425194 ~ 18426053 (+) False zgc:163143
TU252523 lncRNA downstream 147525 18706417 ~ 18713626 (+) True G213221
TU252548 lncRNA downstream 287324 18846216 ~ 18898291 (+) True G213244
TU252634 lncRNA downstream 400138 18959030 ~ 18960740 (+) True G213314
XR_004579329.1 lncRNA downstream 520570 19079462 ~ 19082157 (+) True LOC117598754
TU252799 lncRNA downstream 520718 19079610 ~ 19081890 (+) False LOC117598754
XM_026916958.2 mRNA upstream 42222 18449286 ~ 18451161 (+) True LOC113528424
XM_034309692.1 mRNA upstream 58855 18425179 ~ 18434528 (+) True zgc:163143
XM_026917183.2 mRNA downstream 74606 18633498 ~ 18697593 (+) True tnrc6c1
XM_026917184.2 mRNA downstream 74606 18633498 ~ 18697593 (+) False tnrc6c1
XM_026917185.2 mRNA downstream 111489 18670381 ~ 18697593 (+) False tnrc6c1
XM_026916083.2 mRNA downstream 234412 18793304 ~ 18801817 (+) False yipf2
XM_034309923.1 mRNA downstream 234413 18793305 ~ 18801817 (+) True yipf2
XR_004579361.1 other upstream 151446 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1384108 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2347999 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 2524624 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 2680052 15813242 ~ 15813331 (+) True trnar-ucu_8
TU252614 other downstream 355834 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 355834 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 585182 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 742463 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 1347310 19906202 ~ 19910165 (+) False LOC113528458

Expression Profile