RNA id: XM_026916487.2


Basic Information

Item Value
RNA id XM_026916487.2
length 3380
RNA type mRNA
GC content 0.43
exon number 10
gene id zgc:100868
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6119493 ~ 6128811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTACAGATGTAATGATGTAAAAGAGCGTGAAAGTGTATGACAATGATGGTGTTCAGGACATTGTGTGTGGTGCTCCTAGTCCTCGCCAAAGGATGCCGTTCACAGCTGAATGTCTGTGGCAAGGCTACATTGAACACCAGGATAGTAGGAGGACAGGATGCTGTTGCGGGGTCTTGGCCTTGGCAAGTCAGCCTGCAAGTGCAAGGAAGCCATTTCTGCGGTGGATCCCTAATCAATGAGGGCTGGGTCCTCTCGGCAGCTCACTGCTTTGGAAGTTACATTGCTTCCCAAGTGAGTGTGAACCTGGGGCTGTATACTCAGCAAGGAAGCAACTCTAACAGTGTGACAAAGTCCATCACTAAAGTCTTCACACATCCGAGCTACAATTCCAAAACAAGTGACAATGACCTCGCtctactgcagctgtcttctgTTGTAACATTCAGTACTTACATCGCTCCTGTCTGCCTGGCTGCAAATGGGAGCACTTTTTTCAATGGCACCATGACATGGGTCACAGGCTGGGGAAGAATCGGTGTTGGAGTAAATCTACCTTCTCCTGGGACACTACAGGAAGTTCAAGTCCCAATTATTGGAAATAGGCAGTGTAACTGTTTATATAACGTTGGAAGTATCACCAGCAATATGGTGTGTGCTGGGTACTTGCAAGGGGGCAAGGACTCATGTCAGGGTGACTCCGGAGGTCCACTCGTCATCAAACAAGGCTCTCAGTGGATCCAGGCCGGCATTGTGAGCTTTGGAAAGGAATGCGCTCTGCCAGGTTACCCTGGTGTGTATACGAGAGTTTCTCAGTATCAGGATTGGATCAATCAAATAATCATCACAAACCAGCCGGGCTTCATCAAATTTACATCCAGTGGCACTGATAGTGATCTGCAGGCGTCCTGCAGTGGCCTGCCGCCTGTTACCACACCCAGTCCCACAACTACACTGTGTGGAGCAGCAAAGCTCAATACTCTTTCAGGAACGGGGAGCTCCTTGGCGTCAGCAGGTACATGGCCATGGATAGCCAGCCTGCAGCTTAACGGTACTCACGTTTGTGGTGGAACACTGATAGCCGAGCAGTATGTCATGAGCTCAGCTGATTGCTTctctagCTCAACCAAACCCTCTGACTGGACTGTGAATCTGGGTCAGCTCAATCAGAATGGCTCCAACCCCAACCAGGTCTCTGTCACTGTGACTAATATCACATTCAGCAAAAGTGACAGCAATAACATAGCAGTGCTGAGGTTGTCTACCACGCCTACGCTTTCTGACTTCATCCAGCCCATATGCGTGGACCTGGGGAATACCAGCTTCAACATCAGCACTCAGTGCTGGGCAGTTGGCTGGGGCTCAGGAGGAGGAGCTCAGCAAACACTTCAGCAGTTCAGCACTACTATAGTGAGCTGTGGAAATACGTCTTCATCAAACAGCATCTGCACTGAAGCCATACAGTTAGAACAGaCTCATAAAGGAGGTCCTCTAATGTGTAAGATAGGGCAGTCATGGATCCAGGCTGCAGTTTTAACCCTCGCCACCAACAGTTCGAACAGCACCACTGGATCCACCAACAGCACAAACAGCACCACTAATTCTACCAACAGTTCGAACAGCACTAGTGGCTCCACTAAAACCTTGTCAGATGCAGCATCTCGTGCCACAGATATCCAGGTCTTCACTAAGGTATCCAGCTTCTCAACTTTCTTGAAGTCTACAGTGGGTTCCTTCCCGCCCAGTGCAGAAGGCAACAGCACAGCTTCGTCTTCCTCATCTAACAATTCAGGCTGTGAAGCTTTGTCATCCCTTTCAGTCCTTGTACTCTCCCTTCTTGCCCTCATCCAAACCTTTGGTTTAGAATAAGCACCCCTAATAAACCAATATAAGTAATCAGGTAAATTACACTATGTCTAAGGAAAAGTACACTATATCTCTATTGATTCATCTTTCACATTTAGGTTCACAGTTTCTtgttctggcttttttttttcttgcactttTTACCTGCTTGGTTTGATGCAGTAAGCTCAGTTCAGAAAGGGGGTTAGCATCCagttctgtaaataaaacaggGCAGCAGGGGCTTCCAAGGGGTTAGCCCTATTGCCGCACGTTAATATCCATAACCAATCATAGACAAAGTTCAAGATAAGAAAACAagactagccaatcataggcatCTGTATGCTCATGTATATGGaattaaacagttaatgctCTCCTCCAAGCATGTTTAGCTTTCCTGCACTGTAAAAATTGCTTACAGCAAAATCCTGTTTACTATTTTATGTGATTGTACTACCAGACAATGTAGTGCATAGTGGGAGGTTAAGCACTGAAAAGAAGTGATTTCAAATCCCAGTGCCAACAAGCTGCCAGGGTTgagtccttgagcaagactcttAATCCTCGACTATTCAGCTGTATCCTGCCTcaactgtaagtcactttgaataaaagcatcatGCAAATGTAGcagattagattttattttaaatttactgtatattactggAAACATACAGTGATACACTGTAAAAAGTACAGTAAAGTTACCTGTAAAGTTACAATACTTTagagtaaatatgttttacaattatttactGTGAAATTTAGAGTGCTGCAAGCACTGGCTAGTAAATTACTGTACAtgttacagtaattttttttacagtgtatgatCGGTCATGTGATGTATGTCACGTGAAAGAACAGAATGAGTTTCTGGGTGTAAATCGGCAGTGATTAAACTGGGAAAAATATCtgtcaaaattcaaaataaataaatcaccagaaaaaaaaaacctaggcagcatagtaataatatttaaactgtAACTGAACAGAGAcatatattttgtttctttaattcGTCCCATTATTAGGGGACAAGAAGGAGAATCTTAAGAACCTGGGCTTCTGCTTTGCACTAGACAGCCAGACTTTTTAGGGTTAGGAGACGAGGTCATTGGCACAGAAACTTCATCTCTAGTAGGGAAAGAGACGGAAATGTATCAAACGTTTAAAGAAGGTGAAGCTTGAAGCATGATCTTTCTCCCAAAAGTTCACTAAATGTGAAATATCCTTAGTGCAGAATCAATAATGAGCTGCgttaaaagattttaaactcAGGTTTTTTAGAAATTCCTACTAAATGAACTTTGCTCATATTCTGTGAGCaacattatttttgtgtttattgtttttttaatagtgaaATTACACCTTGTACAGATTGAGTACATGTTGATTGTAACTATGAAACTGTACAGTtttgtatttcagtatttcactaCAAATCTATTTAATAGTACTGCTATTACTTTGGAAAGTTTCCTATAATAAAAGTACATAAATgctatttcagaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244306 lncRNA upstream 127453 5990607 ~ 5992072 (+) True G206339
TU244238 lncRNA upstream 155444 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA upstream 175093 5940879 ~ 5944432 (+) True G206301
TU244235 lncRNA upstream 194340 5918445 ~ 5925185 (+) True G206289
TU244231 lncRNA upstream 221325 5897385 ~ 5898200 (+) False tmem98
TU244377 lncRNA downstream 51285 6180096 ~ 6194964 (+) False ypel3
TU244409 lncRNA downstream 123533 6252344 ~ 6253065 (+) False LOC117598831
TU244542 lncRNA downstream 354868 6483679 ~ 6509229 (+) True G206540
TU244777 lncRNA downstream 422080 6550891 ~ 6551152 (+) True G206722
TU244866 lncRNA downstream 560645 6689456 ~ 6737847 (+) False G206801
XM_026917100.2 mRNA upstream 93686 6024296 ~ 6025839 (+) True LOC113528511
XM_026916323.2 mRNA upstream 221966 5889552 ~ 5897559 (+) True tmem98
XM_026916324.2 mRNA upstream 221966 5889583 ~ 5897559 (+) False tmem98
XM_026917073.2 mRNA upstream 295325 5788721 ~ 5824200 (+) True kcnj19a
XM_026916896.2 mRNA upstream 492545 5494957 ~ 5626980 (+) True asic2
XM_034310028.1 mRNA downstream 1969 6130780 ~ 6134572 (+) False si:ch211-198p11.6
XM_034310027.1 mRNA downstream 1998 6130809 ~ 6134572 (+) False si:ch211-198p11.6
XM_026917045.2 mRNA downstream 9289 6138100 ~ 6147618 (+) True cln3
XM_034309894.1 mRNA downstream 31523 6160334 ~ 6175151 (+) True mapk3
XM_034310099.1 mRNA downstream 51988 6180799 ~ 6188261 (+) False gdpd3a
TU244082 other upstream 458677 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 1028193 5091248 ~ 5091332 (+) True LOC113528649
XR_003402966.1 other upstream 1028609 5090832 ~ 5090916 (+) True LOC113528650
XR_003402964.1 other upstream 1028921 5090520 ~ 5090604 (+) True LOC113528648
XR_003402967.1 other upstream 1029242 5090198 ~ 5090283 (+) True LOC113528651
TU244359 other downstream 1972 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other downstream 1972 6130783 ~ 6134571 (+) False si:ch211-198p11.6
XR_004579365.1 other downstream 31523 6160334 ~ 6175366 (+) False mapk3
TU244376 other downstream 61354 6190165 ~ 6194964 (+) True ypel3
TU244415 other downstream 125657 6254468 ~ 6260857 (+) False LOC117598831

Expression Profile