RNA id: XM_026916490.2


Basic Information

Item Value
RNA id XM_026916490.2
length 4002
RNA type mRNA
GC content 0.45
exon number 8
gene id moto
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4215915 ~ 4226045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAAAAAGGCTCACGAGGATCGATAATCGcgaggaaactttttttttttaaataacggGCGAGCTCGAGACTGTCCGAGATCGGAGTCTTACCTTCGTCCGTTGGTTTTGAACATTAAATTgaccttaaaataaataactttagtTCACAATCGTGTAAGGAAATTGCTAAAAGAGCTCATTTCATCGAGACGAGTAATTAATTTGCTGTTGTTAGCAATGGAGgtaAATAATGCCGTGAAAAGTAAAATCAGTGTGGATGCAAACGGAGCAAAGATGCCGTTCGATCTGTTTCATGGTGGAGGATCAGACTCGTGCTACTCCACATACAAGTTTCagAATGATTATAGTGAAGAAAGTGGAAGACTGTCTGAGACTTTTACTCCAGATTTCTCCTTCTATGAGCAAATGCCTCTACCCTACCATTCCTGGGCAGTGCAGGACGAACCTTATCAGCTGATGGATTGTGCTCAAGGCACCCCCAAAAACAgGAATCTTAAAGATGGCATTGACTGTGGGAGTGAGGCTGATCTCTATGGATTAGTGTCCACCATCTTGGAAGAGGTTGATCCGATGGACTCGTACTTCTCTCAAGAAATATCAACTGGTCTTTCGAGTGGGTGGTCCCCGAAGTCCCAGACGGAGAACAGCTTGCAGTATCTTAATTCTGAGATAAAGGTACAGTCTAGTTCTGGAGTGCAGCACAATCCCGAGCCCGGCATCAAACTCCATACTCGTCCAATGGAAAGAGACTCTGATCAAAGTGCTGCCATGTTACCGCATTTCAGTAGCTTTGAGGCTGCTGACCCATCCTGGCTCTTTTCCACTTGCAATGGAGAATCTAAATCTGAATCCTACACCCCGGCTTACCTGAATTTACCCAGACCACCTCCTGGTCTTGATATCTCACATGCCGTGAGGTCCCATTTCCCCAAGAGCAGACCAGGTAAATCGGAGCATAGTGTGTCTGTCAAAGACAGCAGCTTTCGCAGCACCACTGATGAGATCTCTGAGAGCCTGGATGCCATTAATGACCATTGCTGCCTTCCAACCAAAATGAATGACTCCTACTTCAGCTCATACCAAGATTTTTCTGGATTGAGTGGACCCAAAATTGAAAAGAACAGACCATTCTATATGCAGGATGCCAGCAAGCTGGCCAACAACTTGGAGGCTCTTCTTATGGGGGAGCAGGAGAGCATGTATAATAGAGAATCAGCTCAGAGCAATGCCATGAAAGCTCAGGAAGAAAACGTTGATTTGAAGGGTTTACCTCTCCAAAGGATGTCCACCTTTGAAGCTCATATTGCAAGTCTTAAGAGAGAAATCACAAGGGAGCAAAGAGATAGTGAGGTTGGGAATAGAACTACTAAGGAGTTTGCTGATTTTGGTCAGCAGTCAGCAGACTATTTTGAACCTCCTAAACCCTTCTCACCCTCTTTCAACTTTTCAACTCACCAAAGCAAAGAAGCCAATCAGAGAGAAGCAAAGAATCTCCAGACCAGCCTCCATCAGTACCATCATGGGCAGTCAAACCAGTACCACTGTTACACCAAGCCTCCACCCAAAACAAGCATCAACACTGATCCTCAAGGTACATCTAAATTCATGTCTCAGTCTGTGGCTGagtttgttcctgttctgtCCCAGCAACAGATGCAGAGGACTGCACCTAGAATATTCACTGATTTTGGGCAGAGCGATGGGAGGATGGGTCGCGTGGGCCTGGGTTTGGGTCTGGAGAGCCTGGGTAAGATAGGAGGCACTGTAGACAGAGGAGACTTTGACCTACAGTCAGAGATGGGCAGGTTGCAGACACCATCGGCCACAGGCTTTGTAGCTGATGCGCACCCCTCTCTGCGTTTTGGAGTAAAATCTAAATCCACAGCTGGCTTTCTCAAAGAGGCAGATAAGAAAAAAGGTCTCCTGCAAAACCCATATCGGATTCTAAGCAATATGTATGCGGGTCAGGCCAGACACAATGGAGCCAAACCTGCACCATCCCAGATGTTTCCTTGCTTGTACCAGATGGGAGTTTCTGGACAGAACCCATGCCAAATGTTCCCTTCCCGATCCCCGCTGACCTACGGTGGCTCTGTGCCTGTAGTGGATCTGAGTGAACTACGGCCAGATGCGGAATTCCCTGCCCTAAACCCCTACCTGCAGGAGATGTTGGGGCCGAACCTAGCTGGAGGAGACGGGCCCTTTCCTGGGTTAATCTCCAGCCTGAGGTCATCCAACCAAAGCAACAGTCATGGTGGCCCTATGAGCCAGCTACACTATTATCTGGAGGAGTGCTATGAACAGTGGAGAGTtttggagaaagagagaaagaagGCAGAAGCTACCCTGCTAAAGAGCTTCCCAGGCAAGTGTATATCTGTGATGAACAGTAACTCTGTGCCCAAGCTGCCTCTCAACCCCACCAGAGTGGACAAGCTTATAGTGGACCAGTTTCGAGAGCAAGCCAAGGTGGTGAGCTTGTTGGGGAAGATGGAGCGCTTGCGGAGTTTCCCTCTCCATGCTAATATCGGCTCGACACTGGACAGGCACCTAGAGGCCATCTACATCACTCAGGGTCGCCGCAAGGACGAGTTCCTTAACAGCAGTAGACAGAGGCAGGGCGTGGCTAACCTCAGAGAGGACAGAGATATCCTGCTTTTGGCCTCTGCACTGAAGGACCTGAGCAGGAGCACCAGGACGTCGTGCACCGCTCTGTGGTGCGCTCTGCAGATGACTCTGCCCAAAAAAAGCACCAGCGCCGAGGACAGAGAAGAGGGGAGCATGTGTTCAGTTTTAGCGCACGACAGTTCTGACCAGATCGTCCTTGAAAATGTGCTGTGACTTTCTGCCAGGCAGtcattcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtattattctgAAGGGAATGCTCAGTGAGGTGCTCAGTGGAGTGAGTGAATGTTGTTGTGTAAGTTATTAGACTGCAGTGATACAGTAGGCTCAGTTCGGAGCAATAGATGGAATCCTCAGTTCAGTAACATTTATCAGTCTTATTAATAATCCCAAATGATATATATGGTCATACGAATATGGTCAACTTTTCCAAAGGATAGTGGGCGGAAAGTATCGCCGAGCCGTTTGGTCGGTGGATTTCGAGACGCCGCATGTCTCTTGTGGACAGAATGCTTAAggacagagagcagagagaaagagaaagatggatCAGAAGAGCTGGAGTGAGAAGTGGAAGAGTTAGTGTGGGACAAGATccagaaacagaaaagaacagGGACGTTTTATGTGTCGAAAAAAAGCGATCATTGGAAAAGAATGTGAAGGTCAGCGAGTTTGAAGAATAACGAGATTGTCACCCTCTTGACCTGAGATTTTAGTAGCAGTTACTCCCACTGGAAACAAAAGGCACAATATGTTGAGCTTTAAAAGTAATTAATCCTGGATTAGTTTGACTTTGATGGTTTGATTAATGTGCTTTAAAGAAACGTAAATCCTGGGAGTAAACTGTAAGTTCAGGCTATATTTATAACTTTAATGTCCTTGTATTTTACCTATTTATTGCAACATGGTTACGTTGCAGCATTTGGTTTCGAACAATCATAATTGTAAAGTATTTTCTCTCTGAGATTCtttttgttaattgttttagtttatttattttcaataagcAGTATTCTAACTTGAGATGAGGAGGCATGATAAACTAGTCAGCGTATGTTTTCACGTACAGAGCATCTCAAGTCAGGATACATCTCCAGATCTCTTTCAGTATTAACAATCTTGTTGAATcagatttctgtttatttgaagTTAATAGAGACCGAATCCCTCCGAAGACCTGGGAAGAATGATGACCTCTGCGTGAACGGATAATGATGTGCCAGGGACTGTCATTGttctaatgacaattttaatgtttctgtttccGATTAACGTTTCATTGCACCTCTTTTTCGTTATTAATGAACACACTGTAGAACaataaaagaacagaaaccCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242762 lncRNA upstream 23816 4191737 ~ 4192099 (+) True G204965
TU242706 lncRNA upstream 108187 4105943 ~ 4107728 (+) True G204912
TU242626 lncRNA upstream 346172 3864913 ~ 3869743 (+) True G204860
XR_003402906.2 lncRNA upstream 347818 3856054 ~ 3868097 (+) True LOC113528035
TU243084 lncRNA downstream 129494 4355539 ~ 4356186 (+) True G205242
TU243087 lncRNA downstream 130273 4356318 ~ 4356536 (+) True G205245
TU243092 lncRNA downstream 133360 4359405 ~ 4360374 (+) True G205250
TU243105 lncRNA downstream 167880 4393925 ~ 4394258 (+) True G205263
TU243147 lncRNA downstream 311453 4537498 ~ 4538155 (+) True G205303
XM_026916776.2 mRNA upstream 84440 4120854 ~ 4131475 (+) True ccdc47
XM_026916773.2 mRNA upstream 111161 4057751 ~ 4104754 (+) True kcnh6a
XM_026916775.2 mRNA upstream 111161 4057751 ~ 4104754 (+) False kcnh6a
XM_026917237.2 mRNA upstream 171540 4034566 ~ 4044375 (+) True gfap
XM_034310183.1 mRNA upstream 185465 4029809 ~ 4030450 (+) True LOC117598989
XM_034310291.1 mRNA downstream 301548 4527593 ~ 4549478 (+) True ezh1
XM_026916627.2 mRNA downstream 400448 4626493 ~ 4670646 (+) True plekhh3
XM_026916628.2 mRNA downstream 400448 4626493 ~ 4670646 (+) False plekhh3
XM_026916630.2 mRNA downstream 429316 4655361 ~ 4670646 (+) False plekhh3
XM_026916470.2 mRNA downstream 466432 4692477 ~ 4711316 (+) True retreg3
TU242670 other upstream 229631 3966758 ~ 3986284 (+) True limd2
TU242671 other upstream 229631 3966758 ~ 3986284 (+) False limd2
TU242672 other upstream 229631 3966758 ~ 3986284 (+) False limd2
TU242673 other upstream 229631 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other upstream 244665 3971179 ~ 3971250 (+) True trnae-cuc_26
XR_003402913.2 other downstream 486828 4712873 ~ 4721468 (+) True psmc3ip
XR_003402967.1 other downstream 864153 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 864475 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 864787 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 865203 5091248 ~ 5091332 (+) True LOC113528649

Expression Profile