RNA id: XM_026916492.2


Basic Information

Item Value
RNA id XM_026916492.2
length 2158
RNA type mRNA
GC content 0.43
exon number 5
gene id ccdc43
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4227165 ~ 4233963 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGATCTGCGCGGACACCTCAGCACGCAGTCGCAGGACCCCAGCCAACATGGCGGCGCCCGACTTCTCGGCCGGGGAGTTTGAAAAGTGGCTGAATGAGCGGCTGGACGGCCTCGGGGCGGACCGGGAGGTTTACGGAGCCTACATCCTCGGTGTGctgcaggaggaggagagcgACGAGGAGAAAAGCGACGCGCTGAGCGGCATCCTGTCCGCTTTTGTGGATGAAGACACACTCAAAGAGGTTTGTGAGCAGATACTGAAACAGTGGACTGACTGCTGCTCTCGGACCGCAGCCACCAGCAATCAGCCAGAGGATGAGGTTCAGGCCATCGCCAGTCTTATTGAGAAGCAGGCTCAGATTGTGGTCAAGCAGAAGGAAGTGTCCGAGGAGGCCAAGAGGAGGAAAGAAGCGCTGCTCGCGCAGTACGCAAACGTGACGGACGAGGAAGATGAAGTGGAGGACGAGGAGGAAGCGGCAGGAGCTGTGGGAATCCCCAGCGACAAGTCCCTGTTTAAGAACACCAACGTGGAGGACGTGATGAACCGGCGCCGGCAGCAGCGTGAGCAGGCCAAGGAGGACGCGCAGAAGAAGAAGGAGCAGGACAAGATGCAGCGTGAGAAGGACAAGCTCACCAAGCAGGAGcgcaaagacagagagaagaagcgTACACAGAAGGGCGAGCGAAAGAGATAGACGAGGAAATCGATTACGGACTAAATATGCTGAAGACGAGAGACAAGTGACACCTCTATGGACTGTGTTCTGGTGGAACGTTTgggggtttttgtttgtttgcttgtgttttttttttttttcttttaataaacagGGTTTCAGATCTCAGCACCACTCCTTTAGCCCTTTGTACTGCTCACTGCGGTGTGTATCCCTGCTGGAAAAGGCACACACGAGAACATTTTGGCATCTATTAAAAGTGTATTAATGATGTACAGGTGTGTTTTGGGAGACACTTTTAAACACTGCTGCTCTGCTCAGACTGTCTCCTATTAGGTAACACACAGTTATGGCATAAAACATGTTCTGTTAAACATTTCAAACggatttgtctttttttttttttttttttttttcccttaaacaGATGCCAAAATGTCCTTCTGAGTGTAGCATAGCTTGagaatgtaattatgtaatccATTTCTCATGAACATGTGACTACAGCTTACTgactcttttcattttttcagcctaatctaGTGCGTCTGTCGTGTACGgatgataataataaccttggacaaaaaaaaattcaccacatTTTCCAGTTGATTGAGTCTAAGGGCAGTCGATGAATTCTGCCAATAAAAGCTACTCATCGAGATGAGACAGATGTGAAATAAAGTCTCGCAGAAGCTGTTCTTACGGAGTTCTGTTCAACTTTTCCAACACTgcagcaatacagtaaaaaaggAAATCCTGAAATCCTGTTACTTCTCTCTTTGTGGTTATCCCTGCATGATCAGACTTACAGAACTTTTCTAATTCAATCTCTAAAGAGATGTAGCTCTTAATTATAAGGATTTTCAAgttctctgtttgtttgttttttctcagtaCATAGAAACATGATCCTAGAGATACAGTAGATACGATGTTTAGAATTCCTTTAAGAGACATTTGAAATACACATGAAGTGAGCGCATAAATTTAGTTTTTTACATTATTGCGTTTTGGGGCTTTGTGGAAAAATATTagccttttttctttcaaactTTATGCTGCTCTTTAAGTACTTCTGTCATAAAGCTCATACACACGTGATTATGTTAAAGCTGTTCATTGAGGATAattgtcattctttaacaatctcactgacacacactggtGGTCTTTGCTTTCAGTTAACAAGCCTTTAGGAAATAACTTGAAACACTCTGCAAGCCTTCTTTTCATGTAGCAATACAGAGTTCACCAAAAACATTACATACAAAAAGGATACAAGGGGACTTGATAGGTTTTGTTGCTTCTCACATGTATTTTTGTTGTAATATTTAATCACTCTGCTGTACCTTTCCATTTCCTCATGGCAGTCTACTCAGAACAACTTTTATATTCATGACTTATGAAATTTACTGAGATTTGTTTCAAGAAGACTTTGTAATTTCAGGCAAATAAAGGAACATACTAGTGCTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243064 lncRNA downstream 3032 4223807 ~ 4224133 (-) True G205226
TU243055 lncRNA downstream 16567 4210435 ~ 4210598 (-) True G205217
TU243049 lncRNA downstream 20866 4206100 ~ 4206299 (-) True G205211
TU242986 lncRNA downstream 95198 4129141 ~ 4131967 (-) True G205155
TU242998 lncRNA downstream 122940 4102356 ~ 4104225 (-) True G205165
TU243086 lncRNA upstream 119522 4353485 ~ 4354384 (-) True G205244
TU243088 lncRNA upstream 122353 4356316 ~ 4356562 (-) True G205246
TU243108 lncRNA upstream 152565 4386528 ~ 4386748 (-) True G205266
TU243111 lncRNA upstream 163110 4397073 ~ 4397301 (-) True G205269
TU243135 lncRNA upstream 271235 4505198 ~ 4507712 (-) True G205291
XM_026916491.2 mRNA downstream 13432 4211229 ~ 4213733 (-) True fzd2
XM_034310221.1 mRNA downstream 34574 4152059 ~ 4192591 (-) False mylk5
XM_034310219.1 mRNA downstream 35212 4152059 ~ 4191953 (-) False mylk5
XM_026916960.2 mRNA downstream 35213 4152059 ~ 4191952 (-) True mylk5
XM_034310220.1 mRNA downstream 37614 4152059 ~ 4189551 (-) False mylk5
XM_034309797.1 mRNA upstream 125336 4359299 ~ 4394529 (-) True LOC113527979
XM_026916535.2 mRNA upstream 264935 4498898 ~ 4514637 (-) True ramp2
XM_026916962.2 mRNA upstream 329415 4563378 ~ 4590665 (-) True cntnap1
XM_026917275.2 mRNA upstream 437792 4671755 ~ 4690497 (-) True tubg1
XM_034309940.1 mRNA upstream 488454 4722417 ~ 4734902 (-) True mlx
XR_004579349.1 other downstream 109522 4092913 ~ 4117643 (-) False dcaf7
TU243007 other downstream 182590 4040481 ~ 4044575 (-) True G205173
XR_004579380.1 other downstream 813398 3382831 ~ 3413767 (-) False nde1
XR_004579368.1 other upstream 488454 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 494131 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 855373 5089336 ~ 5091922 (-) False G205633
TU244177 other upstream 1520804 5754767 ~ 5756733 (-) True G206236
TU244224 other upstream 1607174 5841137 ~ 5841477 (-) True G206282

Expression Profile