RNA id: XM_034310073.1


Basic Information

Item Value
RNA id XM_034310073.1
length 3334
RNA type mRNA
GC content 0.44
exon number 13
gene id hmgxb4a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11662221 ~ 11671601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAAAGAGGTAAAATGCACGGCGCAATGGTCGCTTATTGAATCCTAACGGTTTTTCGGCCTGTATGAAGTGCAAACCGCGGGCTTTCGTCGCTAAAACAGCCCGCTGTATGTAGCCCATCCTGGGCTGTCGGATTCTGTGCACTTCAAACAAGGGAGAGTCGGACCCCGGCGGAGCCAAgggggtgtgtttgtgtatcctTTCGAAAGGAGGCGGGAAATGGCCACTCGATTAACGACGAACATCAGCTCGCCTTTTAATTTTAGCGGAAACAGTTTCCGTGTGATGAGACGCAAAGCGCCGGGCGATTTTCACAGCGCGACTGATTGGTGAAACCTAGTCAGTGACTGAAGGCTGATCATGGAATTTGACGAGATAAAACGGAAAGGTGTAATGGAGATGTCGGGTATAGAGGGAGAGGTAGGTCTGGTGGCTGGTCGCAGTCAGAGGGAGAAAAGGCGCTCATACAAAGATTTAttgagagaagaggaagaaataGCTGCACAGGTGTGCAAAACCTCTGAGAGAAACAGTGAGGACTCTGAGTTGATAGTGATGGGTGGAGATTTacataaaaagaagaagaagcactCAAGTGATGAGTACCATTATAGAGACCACCATGGCTCAGGCCCTCCTCATAAGAAGAAGCGTAAGTCCTCTGAACGCTCACCCTCGCGCTCGTCATCATGCTCCTCTCAGCCGGCCCACTCTACAGATACTGCTATGGGCCTCTTGCAGGCTATCACCTCCCCAATGGCCACAGGCTCTGAGCCTGTCCCCAACATTCATAAAAAACCCTCTTACCCTCCTCACTCCTCACATTCCTCCTCCAAAGATCGTAAGCGTGAAGGCAGCTCCAAGAGTGGCCACTCTTTCTcccactctttctctcattcccGCCATCCGAGTTCGTCGTCGTTGTCTAAGAAGCATTCTTCGTCCACCTCGTCTTCTTCTAAGTCTTCCTTGTTCCATGCCGGAGCTGGGAGGGGTGAGCCACTTACACTGCGAGATGGTGAGGGGCTGAAAATGAAGCTCATCCTTTCGCCCAAGGAGAGGAACGAGGGAGGAGAGTCAATTGAAGGATTCCCTTTCCCTGCACACCCATCTTCAGGGAGTATGGGACATCATTCCTCCTCTGGCATCAAAAAAAGTGGgatgaagaaggagaaggacagGGACCGAATGACAACATCTAAACCACCAAAGAAGAAACAGCACAGCCGAGAGCCTCTGCCTATGGTGGGGAAAGAAGTAGAAGTGGAGGGACAGTATGGTGGATCTGTGGCACAGGTGGGAGATTGTTCATCCTCAGGAGGGGAGCTAGAGGCAGGTGAACTGATCATTGATGACTCTTACACGCACCTTTCAtctaaaaagaagaaaaaaagcaaaaaaagcaaaaagaaaaaggacaaagagaaggacagggacAAGGATAAAAGCTCAAAAGAGAAGAAGCACAGCAAAGGAGGAAATGCAGAAAAGAAAGGATTTAAAGGGGACTCATCCAGAAGCCACTCCCATTCCCACAGCTCGTCCAATCACAGTACCTCATTAGGGACATACACTATGGCTCCAGCAATCCCCTTGCATCATCATCAGGGTGCTGACGTGATGAtggtgaagaagaaaaagaaggaggagaaggagagggacAAGCATGACAAAGACAAGaaaaagaagaagagtaCGACAGCTTATCAGGTGTTCTGTAAAGAGTACAGGGCCAATATAAATGCAGAACAGCCTGGACTTGTGTTTGGGGAACTGAGCAAGAAGCTTGCAGAGGTTTGGAAACGTCTACCTGAAAAAGATAAGCAGATCTGGAAGCAAAAAGCTCAGTATCTGCAGCATAAGCAGATTAAAGCTGAGGCCACTACAGTCAAACAGAAGACTTCCTCAACAGATAACAAAATCAAAAGCTCCAGTAAGGTTGTGAGTATGGGGGCGGGGTTGACCTCTCCAAGCCGCTCTTCTCTGACCATCCGGGTACCAGAGGTTGACCCCATAGATGCTGCTGCCCATCTGCAACTCCTTGGGGagtccctctctctcattgGACACAGGCTACAAGAGACAGAAGGAATGGTAGCAGTGTCTGGCAGTCTCTCTGTCCTGCTAGACTCCATTTTGTGTGCTCTCGGGCCATTAACCTGCCTCACTGCTCAGGTCCCTCAGCTTAATGGCTGTCCCCGCAGCGTCTTGtCAAACACGCTGGACAACATAGCATACATCATGCCAGGACTATGAGACTGGAGAACAGATGACCTTACTCCAATTGCACTTCATAAGAAACAGGACTCATAAAAAACAACCTAATTTTTAGGAGCATGAAACAAATGACAATTTCTGacagtttatttttgttaacaATGCACCAATCAGGTCTGGGACAAAAGCATTGGACTTTTGTAGACGTAgaactgtttttaaatcttaaaatgtttaatatttttaaaactgtaattctttaatatttttaaaaaagggatcAGAAATCTTATTCGAGGGAACATGTCTATGTCAGGttattagattttattgttttattgttttagcgTGTCCCAGTGAacgtatgcatgtgtgtatgtttatgtgagtgtgttgtgtgaaaacatacttttattatgtaaagagcaatttatttttatgaagatGTGTACAGTTTTATGTCTGGGCccaaggctgttttttttttttattttaaagttaaattaatAGAAACAAACAGTAGTTTAACTGCAGTAGTCCTTTTACAGCCAAACTGTTTTTATacttgtaaaatgtaatatgttttaatttgtttatagtAAAAGCATGTATGGAATAATTTTGGAAGTGTGACCGAGCAAGTTGCTGTAATGCATAGATTTAGAAGCACAAAGCTGTACAGTTCattattactaatatttttccccaaactgttacgaAGATGCAGGGTGGATTTTATTAGATTTCAAGTTACCTTTTTTGAGCATGTTTATTCTTTTTGGAATTTTAGTTgcaatacatattttaaatcctTTTCAAATATTTGATCAAAAATGTTCAGATGTTCTGCTTGTTTAGGTTTTTACAAAGTTTTTGTGCTCcatattatgaagaaaaaacccCCACAGAACagagaaaggtttttttttttccctgtagtCTTTAATTACATCTGTGTACTTGCACAGCCATAGGCATCAGCTTTAATTAATGTAGGAGAGGCAGCCTAAGCATGTAATAATGACATGTTGCTGCTTGTACAATGACTTTCTATCTTTGCTAGTCTGGCAGTCTTCTTGTAACCCCTGGCATTTTAGCTcctgttcttaaaaaaaaa

Function

GO: NA

KEGG:

id description
K11298 HMG2L1; high mobility group protein 2-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248037 lncRNA upstream 27947 11633912 ~ 11634481 (+) True G209392
TU248035 lncRNA upstream 44194 11618035 ~ 11618234 (+) True G209390
TU247909 lncRNA upstream 283628 11280080 ~ 11378800 (+) True cdc42ep4a
TU247679 lncRNA upstream 680135 10971980 ~ 10982293 (+) False LOC117598771
XR_004579342.1 lncRNA upstream 680350 10971721 ~ 10982078 (+) False LOC117598771
TU248059 lncRNA downstream 37127 11708728 ~ 11708936 (+) True G209410
XR_003402931.2 lncRNA downstream 136660 11808261 ~ 11822910 (+) True LOC113528367
TU248481 lncRNA downstream 348262 12019863 ~ 12021132 (+) True G209775
TU248507 lncRNA downstream 389968 12061569 ~ 12061782 (+) True G209798
TU248505 lncRNA downstream 413527 12085128 ~ 12086009 (+) False tbc1d16
XM_026916026.2 mRNA upstream 308 11657529 ~ 11662120 (+) True ankrd54
XM_026916691.2 mRNA upstream 5301 11648149 ~ 11657127 (+) True foxred2
XM_034310072.1 mRNA upstream 5301 11648276 ~ 11657127 (+) False foxred2
XM_034310071.1 mRNA upstream 20371 11635325 ~ 11642057 (+) True mcm5
XM_026916066.2 mRNA upstream 28755 11626282 ~ 11633673 (+) True gcat
XM_026916500.2 mRNA downstream 105 11671706 ~ 11677461 (+) True si:dkeyp-69e1.8
XM_026917171.2 mRNA downstream 68019 11739620 ~ 11743073 (+) True s1pr5a
XM_034309876.1 mRNA downstream 158442 11830043 ~ 11848621 (+) False rfx1a
XM_034309875.1 mRNA downstream 158443 11830044 ~ 11850336 (+) False rfx1a
XM_034309877.1 mRNA downstream 158443 11830044 ~ 11848621 (+) False rfx1a
XR_004579334.1 other upstream 84605 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 125263 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1244547 10349402 ~ 10417881 (+) False G208781
XR_003402925.2 other downstream 487105 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1804227 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4141641 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 4246616 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4468729 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile