RNA id: XM_026916525.2


Basic Information

Item Value
RNA id XM_026916525.2
length 2717
RNA type mRNA
GC content 0.46
exon number 13
gene id spns1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9032844 ~ 9044136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagggggggtaACAAAAATGGGAGCTAATTCAAGATGGCGCGGCGCTGTAGTGCAAATTCAGAGTAACAACCGagacaacaaagaaaaagacgGTTATATTAGCGGGTTGCTTGGCATTTTCCCTCAAAAATGGTAGCGCGTCAGTTAGGCTAACATTTATACGTTTAAAGCAATAGAGCTGCTTGAGCTCGGTGTTTAGAGAAGAGTGTGAAAGTGCTGTAGAAGAACTGACTTCACCCCCAGCTGCAGCAATGTCTCTCGTCGATCCGACCTCAGATACCACACCCTTCTTCTCCGATGACGAAGGGGAGGGGACAGATATAAAGGGGGAGGGGCAGTCAAATCAGCCGGAGCCAGAGTGTGCGAGTGGAGTGTCCAAAAACAGAGCGGTGATGACCGTGGCAGTCCTCTGCTACATCAACTTGCTGAACTATATGGACAGGTTCACTGTAGCAGGTGTGCTTCCTGATATTGAAAAGTTCTTCAACATCAGTGATGGCAAATCTGGGCTGCTCCAGACTGTCTTTATCTGCAGCTACATGTTTCTTGCTCCTGTCTTTGGTTATCTGGGTGACAGGTACAACAGGAAGTTGATCATGTGTGTGGGCATCAGCTTCTGGTCTTTAGTGACTTTAGCCAGCTCCTACGTCGCCAAAGATCATTTTTGGGCGTTGCTGCTGACACGGGGGTTTGTGGGGGTCGGCGAGGCCAGTTACTCCACCATTGCTCCCACCATCATCGCAGACCTCTTCATCAAGGAGAAGAGAACTGCCATGCTCTCTGTTTTCTACTTTGCCATCCCCGTGGGCAGTGGCCTGGGCTATATAGTGGGATCAGCAGTGGATGAAAGGGCGAAAGACTGGCACTGGGCTCTGAGGGTGACGCCTGGTTTGGGTCTTTTAGCGGTAgttttgttggtgtttgtggtGCAGGAGCCCAAGCGTGGTGCTATAGAGGCTCGGCCCGAGCACACCCTGCACAGGACCAGCTGGCTCGCTGACATGAAGGCTCTCCTCAGGAAtAAGAGTTTTGTTCTGTCGACGTTTGGTTTCACGGCAGTGGCCTTCGTCACAGGATCGCTTGCTCTTTGGGCTCCTGCCTTCCTCTTCAGAGCGGCGGTCTTCACTGGAGAGAAACAGGCGTGCATCCAGGAGCCCTGTGACACCTCTGACAGTCTGTATTTTGGCATCATCACGTGTGTGACGGGAGTGTTGGGTGTAGCGATGGGTGGAGCAGTCAGTCAGCGTCTGAGGAAGAGAACGCCACGTGCTGATCCGCTCGTGTGTGCTGCTGGCCTCCTCCTCGCTGCTCCCTTCCTCTATCTGTCAATCATCTTTGCCCAGGGCAGCACCATAGCTACCTACGTCTTCATCTTTTTTGGTGAGATGTTCCTCTCGATGAACTGGGCCATCGTGGCTGACATCCTGCTGtatgttGTCGTCCCCACACGGCGCTCCACCGCAGAGGCTTTCCAGATCGTTGTCTCTCACCTGCTGGGAGACGCAGGGAGTCCCTACCTCATAGGAGTAGTGTCAGACTCACTGAAGCAGGCGGACTCTTACATGTGGCAGTTCCGCTCCTTGCAGATTTCGCTCCTGCTCTGTTCTTTTGTTGCTGTGGTGGGCGGGGCCTTTTTCCTGACTACAGCCCTTTTTATTGAAGAAGACCGACACTGTGCCGAGAACTATGTTCCCTCAGTTGATGCACCAATTATTGTCCCTAAGAGAGGAAGATCCACCAAGGTGTCTGTGTCGAGTGTTTTAATTTGAGCAAATGAGGACATGGAAGAATCTAGAGAATGCTCACCTCACTGGGGGAAGTAGATGGATGTAGCTGAGCTTGACACCACTGCTGGAGTAGTGTGGGATGAATAGAGTCACTGATTGAACTTTCACCCCTTCAGGGATTTTTAGGATAatttattatgttatgtttGTTATTAACACCTTTATCATTTTTGGGAACATGACTAACCATCAGGAAGTGTGACATGGCACTTCTGAAGGACTTGCTTTCCTGGAAGAAATGTGCTGTCCAGCATTTAGCATTCTAGCATTCAGAGAAGAGCTGTGTCTCTTACTGAGGAAAGCTGAGGACTGTGGAATTATGGGAAATGGTCTGGAAGAACACATGTTCTGGGAAGGACTTTTTCTGTGAGTGAAGAAGCACAAACTGTGTTTTAAACCTCAAGCTAAAAGGAGGAGATTTTaaccttttgttttattaaccaTTTAGAGACTAAAGTAAATTAACAGATATCATTTTACTGTAATCACACTACATAATCATAATGACATGACTATGCATTGATGTGTAATGTTACATTACCTGGAAGACCTTTATACATGCTATAATATttcaacacatcacacatattaGTCAAGGTCTAGCTGATTTTTTGTTCAGATTAAAAACCAGATAGAAATCAAACACCTACCCCTCTGCTTCTGCCCAAGcgtctgatttttattattctgaatatTAAAACTTGCCCTGATTCTTAATTGAAATCGAATGCAGTCAGTGAGAAAACAGCAGATCTTCAGGATGTGCcacttaaatgaataaattcattcctttttttatttatttttttaagaagacTGTGGTGTTTGTACAAAACGTTTTACTGATCTGGAGAAACTGTAATTTGGGAAGGATCAAGTTTGACAaagcatgtttcttttttaaacattaaattaagcTTCAGctca

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246531 lncRNA downstream 1866 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 7861 9024761 ~ 9024983 (-) True G208151
TU246517 lncRNA downstream 25585 9007000 ~ 9007259 (-) True G208145
TU246439 lncRNA downstream 74633 8957261 ~ 8958211 (-) True G208099
TU246438 lncRNA downstream 76447 8955866 ~ 8956397 (-) True G208098
TU246536 lncRNA upstream 17444 9061580 ~ 9063507 (-) True G208158
TU246570 lncRNA upstream 58775 9102911 ~ 9103126 (-) True G208189
TU246658 lncRNA upstream 78060 9122196 ~ 9123881 (-) False LOC113527952
XR_004579419.1 lncRNA upstream 397850 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 397850 9441986 ~ 9446050 (-) True LOC117598997
XM_026916526.2 mRNA downstream 812 9022546 ~ 9032032 (-) True lat
XM_026916527.2 mRNA downstream 817 9022546 ~ 9032027 (-) False lat
XM_026916899.2 mRNA downstream 49467 8973287 ~ 8983377 (-) True pitpnbl
XM_026916735.2 mRNA downstream 79525 8937563 ~ 8953319 (-) False sez6l2
XM_026917054.2 mRNA upstream 1509 9045645 ~ 9049091 (-) False nfatc2ip
XM_034309673.1 mRNA upstream 1509 9045645 ~ 9048922 (-) True nfatc2ip
XM_026916173.2 mRNA upstream 5637 9049773 ~ 9056443 (-) True sgf29
XM_026916158.2 mRNA upstream 60165 9104301 ~ 9120154 (-) True si:dkey-93n13.2
XM_034309669.1 mRNA upstream 60165 9104301 ~ 9109643 (-) False si:dkey-93n13.2
TU246334 other downstream 319526 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 748252 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 765206 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1601772 7425730 ~ 7431072 (-) False natd1
trnav-cac_10 other upstream 143384 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 152360 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 152360 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 365668 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 365668 9409804 ~ 9419584 (-) False prr15la

Expression Profile