RNA id: XM_034310031.1


Basic Information

Item Value
RNA id XM_034310031.1
length 8174
RNA type mRNA
GC content 0.50
exon number 20
gene id si:ch211-278a6.1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4773679 ~ 4935981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATGTGTAGCAGAAAGTCTTGAGTTTCTAAGAGCTCTAGCTGTCTCAAAATGGTGGCAGACAGTATATAGAACTAAGTTTTAAGGCTTTTAAGTCAGAGTTTCCAGATGTTGTGAACACAACCTGAGACCCGGAGCGCGGTGGCGGTCACATGATCTCCACGGATGACCTGGAGTACCCACGCGAGTACCGGAGCCTGGGCAATGGCGCGCGCCGCTTCTCCAACGTGGGCCTCGTGCACACATCTGAGCACCGGCACACGGTGATGGCCGCTCAGAGCCTCGAGGCACTCAGCAACCTGCACAAAGCCGAGCTGGAGCGCAAACGTGACGCCTTCATGGACCACCTGAAGAACAAGTATCCACCTCAGCACTCACTCCCTCCATCACCGTCTCCATCCCACGGGAGCATGAGGGGAAGCTCAGAGAGGAGCGCACGtgaacagcAACAGCCAAACTACTGGAGTTTTAAGAGCCGTAGTCCACGCCATTCCCAGTCCACTCAGTCTGGTTTGGCCGATCAGGCATCCAAGCTGTCCTACGCCTCAGCTGAGTCTCTGGAGACCATGTCTGAGGCCGACATGCCGCTTGGCTTCAATCGGATGAACCGCTTTCGCCAGAGCCTTCCGCTGTCTCGTTCTGCCAGCCAGAACAAACTGCGCtctccagGAGTGCTGTTCCTGCAGTTTGGTGATGAGACGAGGCGCGTCCACATCACCCATGAATTGAGCAGTATGGAGACTCTACACGCACTCATTGTGCACATGTTCCCCCAGAAGCTAACAGCAAGCATGCTCAAGTCCCCCAACACAGCCATCCTGATCAAGGATGAGGCACGCAATGTGTTCTACGAGCTGGAGGACGTCCGGGACATTCAGGACCGCAGCATCATTAAGATCTACCGCAAGGAACCAGTCTATGGTTCCTATACGGCAGCTGCACACTTGGCCAATGGAGACCTGCGGagagagatgGTGTATGCTTCACGTGAGTCATCACCCACTCGCCGTCTGAATACACTGCCCTCCTCCGGCTCCTCCCCTTCCTCCGCCTCTCCCGCCCGTTCTCGTCTTTCCTACAGCGGCGGTCGTCCTCCTTCATTCTCCGGCTCCCAGCATGGACACCACGGACACCATGGATCTCCGGCTCACGGGCCAGCAGGGGGCATGACCGCATCACCATCAGCCATCCTCGAGCGCCGAGACGTCAAACCTGATGAGGAAGTCGCCGCCAAGAATGCGCTCCTGAAGAACGAGAGCCTCTATGCAGACCCGTACAGCCTGGTGCCTGATGGGCATCGTTTAAGCATCGCGTCCATGGGCGAACCGCTGGGCATGCCAGGGCCGGCTGGGCTCTACCGTCGCGGCTCTGTGCGCTCTCTGAGCACGTATTCAGCCGTGGCACTGCAGGGCGACCTGGACGACCAGCTCTATAAGCCGGGTGCTCCGCTCTACCCTGACACCTACTCCGCTTTGGGCACAGGCTTCAGGCTGTCGTCTTCATCCTCTCCTCAGAAGATGTCCGACTCGTACTCGGGGACGCTGAGCCGCGGCTCGCCTGTCAGGCAGAGCTTCAGGAAGGACTCGTCCTCGTCTGTGTTTGTTGACAGCCCTAAATCTAGACCGAGCTCGAGTTCAGAGCCACTGGGCGGCGAGACGGGGAGGGTGATTTCCAGCTTCGGGAATGAGACTGACACGCGCAGGGATCGTATGGAGGCAATGGAGAAGCAGATAGCGAGTCTCACAGGCTTGGTGCAGAGCGTCCTCACTAGAGCACCGGACAGTGACAGCacATGCGGCCTGCTGCGGCTCTGCATGATGGCGGGCTGCCCTCGGGACCCAGGGACCGACTTCTCACGGCCCTTCCCTTTCTCTTCCAGCGAGAAGACGGAGTCCACCAGCGACGGCTCGGCCACAGGAActggcCGGCTGAAGAGGAAAGGTAGCGCCGTCTCTGCTCTCCCGTCTCTGACCCCATCGGCCCCGCTGGCCCTGATGCCTCCTCCGCCCGCAAGCCCACACACCTCCACCGTGTCCAAACTCCAGATGCAGCTCCACCTACACGAGCTCAAGCAGAACGCCACTGACCTGCGCAAGCAGCTCGCCCAGCTCCGCAAgatgcagctgcagaATCAGGAATCAGTGCGCTCTCTGGTGAAGCGGACGGAGGCGGAGCtgagtgtgcgagtgtgtgacgCTCTGAGGAAGCAGGAGGATCCTCTCCAGAGACAGCGCCTCCTGGTGGAAGAGGAGAGACTCAAATACCTCAACGAGGAGGAGCTCATCATCCAGCAGCTGCAtGATTTGGAGAAGTCGGTGGAGGAGATCCAGAAGGAGAGCTCAGTGAACCACAGACACATCACagtgcaggagctggaggagaagAGCACGGTGCTGAGGAGACTGGGAGAGACCCTCACTGAGCTCAagaatcagtTCCCTGGGCTGCAGAGTAAAATGCGTGTGGTGTTgagggtggaggtggaggcTGTAAAGTTCCTGAAGGAGGAGCCACACAGACTGGATGCTCTGCTCAAACGCTGCAAAACCATCACTGATACCCTCACCATGCTCaagagGCAGGTGAACGAGGGCGTGAGGAAGAACATGGAGGAGTACTGCAACCCCTCACCCAAACACACCACCGGAGACGACTACAGGAAGAACACTGACTTTGACATTCCCACCAGCCCACCGCTCAACCTCAACGAGACCAGCCTGGCTAACTGGAGCCCTCACGGCCACGCCCATCCCCACGGCAACCCGTCACCTGGGCAGCTGAAGGGGAGGGGTCTGGAGGAGCTGGGGGGTCGGGGAGGGGCTGATAAGGCCTCCTCTGTGGAAGTCAGACTGGCAGCTGAAAGGGACTGGGAGGAGAAGCGAGCCAGTCTAACCCAATACAGCGCTCAGGACATTAACCGACTTCTGGAGGAAACCCAGGCCGAGCTCATGAAGGCAATCCCAGATCTGGACTTTGCTGCTAAACAGATCAAACCAGTGCAGAACCAACACCAGAACCAACACCAGAACCAACACCAGAACCAACACCTGAACCAGAACCAGTGTGAGTCTCTGTCTAGCACCAACGCCACACCTGAGCACAAACCCAACAAACCTCAGCATCCCACACACAAGGTCTCCAGTAAGGAAGGCGGCTCCAGGCGGGGATCGGATGAGCTCACGGTGGCGAGGTATCGCACGGAGAAGCCGTCCAAATCGCCCCCACCTCCGCCTCCCCGAAGGAGCTTCCCCACCTCACCAGGCCTCACCACACGCAGCGGAGAGGTGATCGCCTCCCCCAAGAGCATGAAGaaatcagaatcagaggAAACAGAGATTCAGAAACCCCATGTGAAGTTGAGGAGGAGTGTCTCTGAAGCTCCCCGGCCTGCCTCCACACCCCCGACAGtggcaggaggagagagagaggatggagaaGTCGAGCACACTGCTGCAGAACTGGAGTTCATGTTGTTGCAGGGAAGTCTTCACCAACCAAAACCTGGCACACAGGCTCTGGACAAGAGTTCCTCTTCGTTCGTCCCTCAGATTGTCCTGACTGAATGTCCTAATTCATCGTCAGAGATCTCCATGAAAGGAACCACGACGCAGGTTTCCAACTCGGCACAACAGGACAGGAGCACAGGAAGTCTTAGCTACAGCAGCTACATTGTCAAAAGTCCTCGTCTGTGGGTGTGGAAACAGGAGCCATCAACCAATCAAACACAATCTCAGAGACCGGATTTGAACAGGACAGTAAAGGAGCTCCAGAAAGGCATGATTACTGAatcaccttcaccttcatcttcatctttaaCAGCAAAGAAACCAGTGAGATTAGTGAAAACAGAGCTGAGGATTCAGGAATCGTTTGAGATCGATGATGATGGAGAACAAGATCAATCCCGGATCCAGGAGCGCAAAGAGGACATTAGACACAGCACCTATCGGCGCCTGGACAATCTGGAGGAGACCATCCGCGAGCTGGAGCTCAGCCTGCTTGATTTTGGGACTCAGGCCATCCCAACCTGGCCTCAAAGTATTCCAGACATGGATTCCAGGACATCCACCAGCACTGCTCCTCCATCTGAATCCACAATAAAGAGCTCAGGAAGAGGAGAGATCCAGAGACCTCCTATTCCGCCGAAACCCTCCATAAATACAGATGCAGCCAAGagtGGTGATGGAAAGGCGATATCTCGTCTAAAGCACCTCCAGCAGAGCGGCTTGGACAAGAGCAAAGTGGGCAAACAGAGAGAAGACTTCCTCAAGAGCCAGGGACAACAGCAGTGAGAAGAAACTCAACTTCACATGACCTGACCCCACCTccctctcctcttcttcctcttcatcatcctccTTGGAGTCTCCTCGGCCTTGTGTACACATCTCTTAGTCTCCCATTCCTAGATGTATGTGAGAAAAATAGGATCCCCAACCAAAACCCTAACCAGGCCTTCCATGAGCATGTGGGGCCGATTGCTTAAAATGGATGACCAAGAAAGACTTCCCCAATCAAACTTATTCACTTATCCACATGGTATACATCCTCCtcactttcttctttctgtcttctctgCTTGGCACTTTCCCACCTTGCTGCCCCTAGAGGGAGTTGTTTCTGATCCCCAGCACCCGGGCTGCTAGCTTCTCTGGCCGTCTACCCTCTGGGCTTTGTAATAACCATCAGGAGGATCTGTTCTCCTCCTCTGGCCAGACCAAAGCCCTCCTGGCCACCCTCTCAACCGAGGCCCTGCTGCTTGCCACCACCCTCAGGCATCGTCGGCTCCTCCGAGAACAGAGCACCAACTCTTCAAAACCTCCCCACTCCAACAGCCactcttcatcctcttcaaGCTCCTCTTCCTCAGCCTCAACCCCCTCTCCTGTGTCCGCCGGCTCATCTCATGACCCAAACCTCTTGATTGGCAATGGTGCAACAAACAAGAAGTAAGGAAAAGATGTTGTGCCCCAGATTGTTCCAGCTACAAACACTGAGTGAAGTACTGGGACAAGGAAGAACCTCCATGCAAAAGGATATCCACATCAAGGTGAAAGAACAACAGAAACACCTTGAATTTATagaatttaaaaagttattagTCATGTAGaatctcctcctccatcttgGCTAAACGCTTGAGGAATGATGCAGGctacagcccacacacacactgcctacCATCTCTCATTCATTATGGGTTTATTCTTCTCCCATCTGGATCGTCCAGAACCCAGAAAGTACTGCCAGTTTCCCTCAAGAAGCCCACAGATGGGtttggatcccctccatgttcTAGCCTGGCTCACCATCATGTCAGTGGGCCAGCCAAATATTACCCACATGAGGCCAGAGAAAGGACTCTCTACCCCAAACACAGTCATCCACCTGCCAAATATCACCTTTTCACAGACCTAGTGGTGTCTGGTAGATTTTTATCAAGTGTAATTAGCTAGACTGTGAACATGTGTGATTGAAGGTAGAGTTGCAATAATCCAAAAGTGAGTACAGTAGTAGTCAATGTGTGTTCAGATTTTTATCATcgtaatatttaaaatggcagaatttgagaaaaacaacaaaacaaaactgtataATCAACCTTTTTATTTCTGGGATGGTTTCTCTGGGTAATAACAGAACAGATAACATACTGCACTCAGAACGATGGTGACACCTGATGAGGTACTTTTAGAGGTATGTCTTTTTTAACTTTAGTTGCAGAAAGATAATTGTAGatgaacattattaaaatacttaattaTACCTTAAGGACCGCTGCTCTAACTTTGAAACTACATTTGCATTAATGGTAGCTTGACATTAATGGTGAAGACAAGTATCTGAAACTGGTGCTATCATCTTTTTTAAACGGGTGGGAATTCCAGTATGTAAAAGGAAAAGAGTCTTTGATTCAAATTGTCATTTTCCATATTTCTTCAAACTTGACACAAAGTTACAAGTGCGACAGATGGATTGTGGGACGTAGGAGGACATTCGCTGGTTACAGACTTAGAATCCAGTAAGGAGGTTGAGAAAGTTGCAGTTGGCTAAATTAGAGAGGCTAAGGAGAGCTGTCCGAATGTCCAAAGGTTATTTAAGGCACATTACTGCATGATGGAGGTGTAGATGCTCCATGAAAGCACAACCAGCCATGTGTAAAGAGACTGAAAGGAAGGACCTTcccaaacattcatttttttcaaagcaTAAAGTACAGTGATTGTATCTGACAATCAGCACAAGATTGGCACACTTTGTTTAACCCTTGGGCACTGCCACAATGCACAAGTGTGAAGCTCTCTTTGATAAAACAATGTAGAAAAGCAGATGGATTCATCCAAGTGAGGATTGGTGTAGGGTTTGGAGAACTTTCCAACTATACAACTATAGGGGACAATTATAGATCTTTCTAAGTCACCAGAAATATAAAATGCCAGAAGTGAAGCTCATGTTCAGGCACTTTCTTCTGAGTTGGGTCAAAATCAGACCACCTTGGTAGAAGCACTCAAAAAATTAGACCAGTCAGTCCATTAGGACAAATTTCAGTTGCTCTTAATCACATAAATCAGTCACTCATTCATCCAAGAGAGGATTGGTGTAGTGTTTGGAGAACTTGCCTGTTGAATGGGGGGCAACTGTAGATAGTTCTATTAAGCCAGAAACCTAAAGGTCTCAAAGAGTAGCTCGTGTTCAGGAGCTTTTTCCAAAGGAGGGTCATAACAGACCGCTTTGGTAGAAGTAATCAAAAGGTTGAACTGTTCATTCCATTAGGACAACTTTTAGCTGCTCTTAATCTCATCACTCAGTAACTCATAAGCTCCTTAACTTGCCAGTGGCAACAGCAAATGTGTCATAGACACGGTTTTTGGTCTTGCTTTCAGAGAAATTCCTAGAAAAAGGAGAGTATTAAGAGAATACGGATTTTCTTTCTAGCTGTTTGACAGAACAAGTGTTGGAAATGGATTTGTCTCGGCGCAAAGATGAAAACAATGGCCTGAGAGCAGGGCCCGCGAGAGCAGCAGGCAGCCGGAGTAGAGATTAGCACACGTGCTTGCGTTTTTTTATGGAGAATTTGGTGCAAAACGTCAGCTTTGGAAGGATTTCTGTTCCACAAGGGAAATCAACTTAATTACAGGAAACAAATCTGGCTCTTCTGGCTTCAGCTCAGCCTGGCAGTAGGCGAATGCCTTTGCCATTTCTtggggaaagaaaagagaaacaaagctCTGCTCTCTGCAGCGGATTTGTCTTACTGTGTGCAGCTTTTTCTTGAGAGAGCTCTCTTGATTTGTGGCCTTTAGAGAGGCTGACAGGACGAGTTGAATGAATTGCTTGATTGGCAGGTGGCCTTTATGTCATCTTTAAAGGCACTGGATGATTTTGCTTCTTGGCTGCCGTTCATTTTTTGACAGGTTTcgaacaaaaaaaatggcaaagatATCCGCCTGCAGATGGAAATGTGAACAGCTGGGGAGAAACTAGGTtaattttttggtttttgcaTTGAATTTGTATGCTTTTAGTTTATTAGGTTTGTATGAAGCACCACTGACATTCTCTAAAAAGGAAAGAGGCAAAAAGCAGCCCAAAATCAACAAAGTAAAAGCGTAAAACTGTCGAATCCTTAATCAGAATGTTCACAGCACAAGAATTATGAAAATGGCACCAGCGCGGCTTGGAAGAATACAGGCCTCAAGCCAATTCAGTTCATTTCTGTAGTACTGATCACAGTCCGATCCCCAAAACCTCATAATTCAGAGTGCTATGCTTGCAGCTTGGCTACTTCTAGAAGTGTAGCCCTGACCATAACATCTgtcccctccacacacactttctctgtcCATGGATTACACAGTAGGGCTAATGGAGGTGTTAGCATCCTTAAACCGTGGAGAGCTGAAGGAAGTCCCAAAGTTCTAGACAATGAATAAaccatgttgaaaaaaaaaaatcacaatttgcATTATAATATCTGTGATTAGCTTTAGTTTTAGTTCATAATGAATGTAATATGTATCatattggggtttttttggcaTAGATTGGTAATATGATTGTccctaaacaaaacaaatgatgcAAACCTTTAtcatctcttttgttttatattaactGAAATTGCTTTgtacagcttttttttcctttgcttttttatatatataattacaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243437 lncRNA downstream 2835 4766737 ~ 4770844 (-) True G205541
TU243349 lncRNA downstream 72716 4699200 ~ 4700963 (-) True G205488
TU243345 lncRNA downstream 213257 4553297 ~ 4560422 (-) True G205484
TU243342 lncRNA downstream 221811 4549561 ~ 4551868 (-) True G205481
TU243137 lncRNA downstream 258541 4514936 ~ 4515138 (-) True G205293
TU243527 lncRNA upstream 120929 5056910 ~ 5057116 (-) True G205628
TU243533 lncRNA upstream 153355 5089336 ~ 5091922 (-) True G205633
TU243534 lncRNA upstream 153355 5089336 ~ 5091922 (-) False G205633
TU243538 lncRNA upstream 153355 5089336 ~ 5091922 (-) False G205633
TU243539 lncRNA upstream 153355 5089336 ~ 5091922 (-) False G205633
XM_034309940.1 mRNA downstream 38777 4722417 ~ 4734902 (-) True mlx
XM_034309939.1 mRNA downstream 38794 4722417 ~ 4734885 (-) False mlx
XM_026917275.2 mRNA downstream 83182 4671755 ~ 4690497 (-) True tubg1
XM_026916962.2 mRNA downstream 183014 4563378 ~ 4590665 (-) True cntnap1
XM_026916535.2 mRNA downstream 259042 4498898 ~ 4514637 (-) True ramp2
XM_026916469.2 mRNA upstream 16115 4952096 ~ 4965626 (-) True arf2a
XM_026916103.2 mRNA upstream 79586 5015567 ~ 5048818 (-) False gpatch8
XM_026916108.2 mRNA upstream 79586 5015567 ~ 5048740 (-) False gpatch8
XM_026916111.2 mRNA upstream 79586 5015567 ~ 5048740 (-) False gpatch8
XM_026916105.2 mRNA upstream 79586 5015567 ~ 5048740 (-) False gpatch8
XR_004579368.1 other downstream 38793 4722417 ~ 4734886 (-) False mlx
TU243400 other downstream 38874 4728094 ~ 4734805 (-) False mlx
XR_004579349.1 other downstream 656036 4092913 ~ 4117643 (-) False dcaf7
TU243007 other downstream 729104 4040481 ~ 4044575 (-) True G205173
XR_004579380.1 other downstream 1359912 3382831 ~ 3413767 (-) False nde1
TU243535 other upstream 153355 5089336 ~ 5091922 (-) False G205633
TU244177 other upstream 818786 5754767 ~ 5756733 (-) True G206236
TU244224 other upstream 905156 5841137 ~ 5841477 (-) True G206282
XR_004579400.1 other upstream 1004881 5940862 ~ 5950997 (-) False retsat
XR_004579347.1 other upstream 1017752 5953733 ~ 5961050 (-) False LOC113528542

Expression Profile