RNA id: XM_026916531.2


Basic Information

Item Value
RNA id XM_026916531.2
length 2310
RNA type mRNA
GC content 0.47
exon number 6
gene id rab5c
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6483671 ~ 6501470 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCCGGAAGTAGGCGGATCCGGAAGTCCGTTCCCGCAGGCGGAAGTGAAGGCCGGGGCCCGTCGGCTGGACTGGAGACGTCTTGGAGCGGCGACAAGGGAAATTCCACTCCATCTCCATTTTGAGAAACGTTGACTAAGGTTTCCTCCACCTGTGACTGCTATCCCTCTCTCCATCCGTTCTCTAGCCTGTCTCGATCCTGGTGTCCTCCGCTCCCTCTCTCGTCCTCTGTGTCCTTGCTGAGCTCCAGTCCCGGCGTTAGCCCAGCCTGCTCTCCTCTAGTGCTGGCATGGCGGGGCGAGGAGGAACGACGCGGACCAACGGCACTACCGCCGCCGCCGCCAACAAGATCTGCCAGTTCAAGCTGGTGCTGCTGGGAGAGTCGGCCGTGGGCAAGTCCAGCCTGGTACTGCGCTTCGTCAAGGGCCAGTTCCACGAGTACCAGGAGAGCACCatcggagCCGCATTCCTCACACAGACAGTCTGCCTGGATGATACAACAGTAAAGTTTGAGATTTGGGACACAGCTGGACAAGAGAGATACCACAGTCTGGCCCCAATGTACTACAGAGGAGCCCAGGCCGCCATTGTAGTCTACGACATCACTAACACAGACACTTTCACCCGAGCAAAGAACTGGGTAAAGGAGCTCCAGAGACAGGCCAGCCCCAACATCGTCATCGCTCTGGCTGGGAACAAAGCCGACCTTGCTAACAAGAGAGCTGTGGATTTCCAGGAAGCGCAGGCGTACGCAGACGACAACAGCCTGCTGTTCATGGAGACATCCGCTAAGACCGCCATGAATGTCAACGAGATCTTCATGGCCATCGcTAAGAAGCTTCCGAAGAATGAGCCACAGGGCGGGGCGGGGCCTGGGGGGAGGGCTCGGGGCGGAGTCGACCTGCAGGAGGCGGCACCTCAGGGCAGATCCAGCCAGTGCTGCGGAGGAGGAAACTAACCATCCGTCCAGTCTTGTGGAGAACGTGGCCGAGGATCAACACAGACACATCATCAACCAACTCATAGTCTGACAGTTATGTCTATTCACAGCCCAAGTGGAAAATCTAGTCAGTTAGACTGTGGCATCCATCAGATTCTGCTTCTGAACTGACCAAAGGGGCCCTTCACAGCCACTTGTAAATATTTTGACCAATTATCCCTCCTACTTCTAGGCAGAGCCACAACCTCCTCCTTAACAGCTGTGTTTAAGAATCAGCCACCTGTCAAAACCTTCtgtcaaaaagaaagaaaaaaaaaagatgaatttaGGGAATAAGGAGGGAAACCGATCAACCGCACTTAACCAGAGCTGTGAGGTTCTTGTTCTAGTCTgtattcacataaaaaaaaatcaacactgcAGCTGGAGGGAAAACAGGCTTCCTTCTACTTTATATcctcaacctctctctctcccctcagtGCACTTTgaactttctctgtctctctctctctctctctctctccttctctgggCACAGTGCCTAACAAGTATTGAATTCTTCTCTCCTTACTGATCCTCTAATTTCCAGtgagaggagacagacagaagggagCGAGAGGCTGTTTTCCCTTCATGCGCAGCATTTCTGTAGATTCTGTATTATTCTTggttattgctattattattgtaattattatgaATACCACTACTCCAGGactaatgaatataaatgatagATTAGCTCCCCCCTGAAATCATTACTGTCTGATATCTTAAACTGTAAATGCATAACGCATTAACAGCTATAACGCCAGTGTCTTTAAgcattaatgaaatgaaatttatcAAATCGTTCAATCAACCAAGCTGGTGTTAAACATGAATAACGCAAGGCAGGGTTCGCTTCCTCTGACCAAAATCACAATGTATgtgtattgaaaaaaataactatGTTGCTGTATTTGTactttgtattttctttctttttttttttttttttctgcaaaatatATCCAATCATTAGCCATTATCAATACAATACCTTCCCAAAACAGATCAAtcatccatcttttttttttttccctccctcttttctttttggtgAAATGATTtttgtaactaagttttctctGAGTGCACTGGTTGTCTGTctcatgatatattttttttcccatggttatttttccattcttctGAAGGTGAACTGAGATTTTTCATCTTGTAATTTAGCACAACAGATCAGAACCGCTGCCCATGCCCCACTTTGAAAGGGTTGGACAAATGTTTTGTGGTCTTCCATGGACGGGGGACGCAAACAACAATCTTCTACGTGTAATTTTACCAATAAAAATGGGGAAGGTACTTTT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244696 lncRNA downstream 137308 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 279475 6203312 ~ 6204196 (-) True G206628
XR_003402891.2 lncRNA downstream 293745 6187474 ~ 6189926 (-) True LOC113527891
XR_003402949.2 lncRNA downstream 530167 5952798 ~ 5953504 (-) True LOC113528476
TU244141 lncRNA downstream 755991 5721634 ~ 5727680 (-) True G206210
TU244981 lncRNA upstream 144627 6646097 ~ 6647814 (-) False stat5a
TU245006 lncRNA upstream 323426 6824896 ~ 6825760 (-) True G206924
TU245005 lncRNA upstream 324898 6826368 ~ 6828146 (-) True G206923
TU245188 lncRNA upstream 600778 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 675062 7176532 ~ 7176755 (-) True G207198
XM_026916972.2 mRNA downstream 2387 6468354 ~ 6481284 (-) True kat2a
XM_026917300.2 mRNA downstream 15774 6461123 ~ 6467897 (-) True dhx58
XM_026917301.2 mRNA downstream 16030 6461123 ~ 6467641 (-) False dhx58
XM_026917249.2 mRNA downstream 40389 6350664 ~ 6443282 (-) False znf385c
XM_026916862.2 mRNA upstream 5234 6506704 ~ 6548501 (-) True kcnh4a
XM_026917049.2 mRNA upstream 49071 6550541 ~ 6555884 (-) True hcrt
XM_026916533.2 mRNA upstream 55668 6557138 ~ 6632345 (-) True si:ch211-210g13.5
XM_026916395.2 mRNA upstream 144588 6646058 ~ 6726165 (-) True stat5a
XM_026916398.2 mRNA upstream 144588 6646058 ~ 6720994 (-) False stat5a
TU244626 other downstream 288675 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 522621 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 522621 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 532674 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 642194 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 769436 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 770785 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 771587 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 772836 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 817133 7318603 ~ 7321962 (-) True G207231

Expression Profile