RNA id: XM_026916568.2


Basic Information

Item Value
RNA id XM_026916568.2
length 4175
RNA type mRNA
GC content 0.45
exon number 15
gene id baiap2a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11074517 ~ 11145832 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTAAGACACGCcttgtgggtggagctaaaacAAGGGGGCGTGTTTTCCAAACTGAGAGAGTTGTCTGTTTCAATTACCGCAGCACGGTGGGCGCTTCTCAGCTGCAGCTCCTGTCGAGCGAAAAGAGCGAGTTTTTGTAGTCAAACctgagctttattttattttgactgCGTTTAGGAGCCGAAAAAACAAACCCAAGACGTGTTTCGGATAACCATTGTCTTAGAAGAGAGTGTTTATGGTTTGGACTGAAGATATCAGCATGTCTCGTGCCGACGAGGTCCACCGCGTTACGGAGAATGTCTACAAGACCATCATGGAGCAGTTCAACCCCTGCTTGCGGAACTTTGTTGCCATGGGGAAGAACTATGAGAAAGCTCTCTCCACTGTGACATTTGCAGCCAAGGGCTACTTCGACGCTCTGGTGAGGATGGGTGAGCTGGCCAGCGAGAGCCAGGGATCCAAAGACCTCGGGGACGTGCTCTTTCAGATGGCCGAGGTCCACCGGCAGATACAAGTGCAGCTAGAGGAAATGctgaAGTGCTTCCACACTGAGCTGCTTTCAGAGCTGGAGAAGAAAGTGGAGTTGGATGCCAGATACCTGACTGCGGCTCTGAAGAAGTACCAGATTGAGCACAAGAGCAAAGGCGAGAGCCTGGAGAAATGTCAGGCTGAGCTGAAGAAACTGCGTAGGAAGAGCCAGGGCAGCAAGAACCCATCCAAATACAACGACAAGGAGCTGCAGTATGTGGAGACCATCAACACTAAGCAGAATGAGCTGGACACCTTCATCGCAGAGGGCTACAAAACGGCTCTGTCAGAGGAGCGCAGACGATACTGCTTCCTGGTGGACCGCCAGTGCGCCGTGGCCAAGAACAGCAGTGCCTACCATGGCaagGGCAAGGATCTGCTCACCCAGAAGATCCCGGTGTGGCAGCAATCCTGCTCAGATCCCAACAAGCTCCCGGAGAGGGCCATGTTGCTTGTGCAGCAGATGGTGTCCGGCTCGAACCCCCTTCTCTCCAGCCCGCTGCATTCCTCTAAGGGCAACCTGGTCATCTCGGAGCCGATCCCTGGCGCTCAGCCCCTGCCTGTGCCCCCTGAACTGGCGGCCCTCATGGGCCACCCAGGGAGGCTGATGGGGCCTGATGGCATGTCTCTGGTCAATGGTACGACAGGAATGCAAGGGGAGGAGTACTGGGCTGACGGGGGTGTGTCTCAGGGAAGACCCGCCTCCCCTCAGCCTCAGTCCCAGACTCAGCCACAGAGGCAGGTCAGCGAGGTTTACTCCAACACCCTGCCTGTCCGCAGACCCCAGCCCGCTAAGAGCAAGGCCACCGTGGGCGAGACACGGACTCTGCCCAGGTCCAGCTCCATGGCGGCAGGACTGGAGAAGAATGGGCGCTCACGTGTGCAGGCCATCTTCTCTCATGCTGCTGGTGACAACAGCACACTGCTCAGCTTTACCGAGGGTGACATTATCACACTGCTGGTGCCTGAGGCTCGGGATGGTTGGCATTATGGAGAGAACGAGAAGAACAAGATgagaGGCTGGTTCCCCTTTTCCTACACAAGAGTGTTACCTGACAGCGACAGTGACAAGCTGCGAGTTAATCTACACCATGGAAAGAGCAGCAGCACAGGGAACCTGCTGGAGAGAGACGACACGTCTCTGCCCATGCCTGACTACGGTCTGACCGCCCGTCTGTTGGCTCAGAGCCTCACACAGAATCGCCCGCGTCCCTACAGCATGGCTGGCTTCACACagCCAGCGATTGAGGATTATGACAGTCGTTTTGCCACAAGTTTGGGTCCTGAATTGTCCCGGTTCTGAGTGTACAGGACCTCCTGACCGCTCCCTGGAGGTGTACCTCAGATCAAGCTTGATGGACGGCCACACAGCTCCACTCTTCTACTAATGCGGCCTGTTCACAGGCCTGCTCTCTACCACCTGAAATAATACACCGAGCCACATGCTTAAGACTCTATAGGGCAACTGGGGATAAAGCCCTGGATCCATAACTTGGGGTTCTAGAAATTAAACAAGTGTTCTGTATAGCTTCCTAAACATTGCTGTATAGTTCTGCAGAAATGTCATCTTCACTCTAAACTGCTCTGAAGAGAAATTAACTGTGTATGTTTGAAAGGTTTATAGATCAGTACTCTTATTGATTCAATCCCATTATGGTGATATACAGTcatatgtgatgtgatggttaAGGGTTTTGAtacaaaattaagaaataattcAGAAAAAAGCTAGTCACATCAAAAGGCACATGGCTTACCCTTGTGAAAATGTAATGATTGAGTAtagattattttaattcttttttctttcatccctTATTATTATCTGTTGCTACAGTAGGCCTTGGCCTTTTTCATCTTAAGTTGAGGTAAGATTAGTGCTTCAGTTTATATTAGATATTGAATAAAAAGTGATCTTATTTTCACTCTGTAATTAAGGCTCCCCTCTGCCCCTGCTATAGCTGCTGTAAATTGAGGCTTTATTTTGGGGCACTGGTGGCTCAGTGGCTCTGGGCTACTGATCACTTCAAGTCCCAGCAGTACCAAAAACCACTGTTTGGCCCTTCAGTATGTCCCTTAACCCTCAAATGATCAACTGAGTTGCAAGTTGCTGTGAATAAAAGCATtcgccaaataaataaatgtaaatgtactttgGCAAAGACTCCATCTGGCGCCTCTATACTGTGGACACTTCAGTAATGAAAGTGTCACTGCACTCGTCTCTATTGCTTCAATATAAAGCTAGCAGTTTCTCTGTATATTTCCTGGCAGGGAAGCCTGTATAATGTATTTTCCACCAGGGGTTTGTGCCTTCTACTGCTTTAGGTGttttagctttaaaataaaaagtccaGATGTTCATAGGCAAAGGGGAAGTATTCAGAATTTTGTATTGATGTTTGCTTTTtagtttcttttcatttttaattttattatagacACCACAAAATGATGAAATTTTTGTGTTGTTGATTAActacttagaaaaaaaaattcaatataaacaatactgTTTGTTCTCTCACATTATTACTGCTTCTTAAAAATTCAGAATTAGATGTGTGGGCTTATGAGCACATGCACAATTgcttaaaatgtacatttagtGTAAATAGATATTTTTCTCAATTTGCTTCCCATatacatcttcagtaagcgcttcatcctggtcagggtcatggcgGGATCCGGGGCAATCCCAGGAACAATGGGCGCGAGGTGgaaccctggatgggacgccagttcatcacagggaaccatgcacacacacacattcacatactcattcacacctagggtcaGTTAGAGTCTCCAGTCACCTACTACCATGTTTTATGGGATGAGGGAAACTGGAGAATGGGGAGgaaacctacacaaacactgggagaacatgcacagaaactgtaatgcacagacagtaacacaagcTTAGGATTGAACTGAGGACCCTTGGTTGCACTACCGTGTCACCCACGTGTtaaattgttaattaaaaaatacacttaTCTGCATATCTTGCATCACTCTTGTGcttatttcaaaaatattctaACTACTGGAGGTCAGAACTCCAGCAGATGTGAACTTTTaagatttaaatattatttgttttttgtgggggtttttttttttttttttagttgtataTGACATTTTCTCTAATACACAGAGCATCGCTTGTTCTGTGCTGAAAACAAACATTACAATCCTATAGAAAAATGATGCAGTCGACTCTATGAATTGTGAGAAATAGCTTAAAATACTCATTATGCttgaaaatattttggtttcatgatctcatttttttcttaacacCTTTATATTGTTTAGATATAGGTGTCATTTTGAAAACTTGCAACTTCTAGTTCTAAATCCTACTTAATCTTGAAAGCTTTTGTGTACTTGCAGTAGTGTATCCTGGTACTGAGTGTACCATCAAGACAGGAAACATCACTGGATGTCTGATTGGAATTGCACAGCATTGGGAGAatgaatgtttgtgtgaaaaGCCTATGTTTTTATAACATGTCCAATCCATTTTGGCTTTGTCTTTGTTCTGTTCATTCTTATTTATGTTGATGCATTTTACTAATACATATTTCTGttctttgtgaaataaaaaatggatgaaatCAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247589 lncRNA downstream 440367 10633535 ~ 10634150 (-) True G208998
TU247571 lncRNA downstream 555570 10518342 ~ 10518947 (-) True G208980
TU247554 lncRNA downstream 623977 10447736 ~ 10450540 (-) True G208964
TU247529 lncRNA downstream 732295 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 783632 10221710 ~ 10290885 (-) True G208771
XR_003402938.2 lncRNA upstream 72829 11218659 ~ 11221378 (-) True LOC113528410
TU248077 lncRNA upstream 72838 11218668 ~ 11221366 (-) False LOC113528410
TU248181 lncRNA upstream 243130 11388960 ~ 11389231 (-) True G209529
TU248190 lncRNA upstream 254892 11400722 ~ 11401423 (-) True G209538
TU248193 lncRNA upstream 257248 11403078 ~ 11405775 (-) True G209541
XM_034309798.1 mRNA downstream 48713 11023672 ~ 11025804 (-) True LOC113528015
XM_034309799.1 mRNA downstream 48713 11023672 ~ 11025804 (-) False LOC113528015
XM_026916997.2 mRNA downstream 62967 11009287 ~ 11011550 (-) True rcvrna
XM_026916800.2 mRNA downstream 111677 10943238 ~ 10962840 (-) True tbl3
XM_026916141.2 mRNA downstream 175977 10872034 ~ 10898540 (-) True LOC113527942
XM_026916804.2 mRNA upstream 1564 11147394 ~ 11152163 (-) True LOC113528317
XM_026917208.2 mRNA upstream 9085 11154915 ~ 11191515 (-) True ttyh2l
XM_034310290.1 mRNA upstream 9085 11154915 ~ 11191234 (-) False ttyh2l
XM_026917210.2 mRNA upstream 9085 11154915 ~ 11184750 (-) False ttyh2l
XM_026916043.2 mRNA upstream 280455 11426285 ~ 11438335 (-) True hs3st3b1a
XR_003402902.2 other downstream 603999 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 689397 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 1343267 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 1600039 9466480 ~ 9474478 (-) False copz2
TU246804 other downstream 1654933 9413601 ~ 9419584 (-) True prr15la
XR_003402978.2 other upstream 286680 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 390730 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 420180 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 554076 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 609995 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile