RNA id: XM_026916586.2


Basic Information

Item Value
RNA id XM_026916586.2
length 1529
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC113528183
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14461356 ~ 14463482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAAGTGTGCACAGAAGGTCCCATACCAGCAATATGAGATGAGCTCCTTTTGGCTTTCGAGGAGGATTCCTTTTTTCTGGAAGCCGAGGTCAGAAATACAAGATGACGTGACCAAACCACTCATATCAAAGGTAACCACTCGGAATGGCATTCAATACCTAGGCACAGACATCAGCACAGAGCGCCAAACCGATTCAAGTTCATTGAGCCATGATGAGCAAACCAAACTGTCATCCTGGACCTTTCCCCATTTACAGACCCACAATTCCTCCAATCTTACTGACTTTCTGCTGAAATATGTGCTTTTCACTAGCAACCTACTCTTCTCTGTGCTGGGCCTGGCCACCTTAGGACTCGGGTTCTGGGGTCTTGTGAACAAGGAGTCCTTCGCTCAGGAGAAGCTGGATGGCCTTGGCACTGATCCCATGCTGCTCTTAGTTTTTCTGGGCTTGCTGCTTTCAATGCTTTGTCTGACAGGCTGTGTGGGTGCACTGAGGGAGAACAACTGCCTGCTACGTACTTTCTCTGCAACACTGCTAGTCCTTGTAGCTGCTCAGGTCCTGGTGGCCATTGTGGCCTACAGCCTGCAGGGCTGGATTACTGAGCTGCTGCGCTCAGCCATGCTGACAGCCATGACCCGCTACCAGGACGACCTGGACCTGAGGTTTCTTACAGATGAGATCCAGATCGGGCTGCAGTGCTGTGGGGTGGATAACTATCGAGACTGGGAAGTCAACCAGTACTTTAATTGCTCATCTCCAGGCGTGCAGGCATGCGGCGTGCCTCCCTCATGCTGTGTGGATCCACTAGAGAATGGTACAGTGTGGAACTCGCAGTGTGGCTTCGGGGCACAGCAGCTGGATGAGTTCGCTCAGAGTGTGATTTTCCTGGGGGGCTGTGTGGGCAGTATTTCACGCTGGCTCAACCTGCACTCTGAGCTTATCGGCATAGTAACAGCTGCCCTGCTTGCAGTCCAGATCCTCACACTGATCACTGCTACACGCTTGCTGGATAGGATCCAATGGAACAAAACACAAGCATGGTGACGAGGAACACGATCTTAACGATTCATGAAGAAACTTCTTCATCACTGAGAACTACAAGGTACAAAAGACTGGCAAGTTAGATGTATCACAAAAGACTGGCAAGGTAGTTGTATATTAACTCCTATTTATCACATTCTGTATGTTTTACTTCTTTCACAGTGAACAAGTGAATAATCATTTCTCCCCATCACTTTTCCTatcctgtttttcattttcacttgtgGTTCAATTAGAAAGGACAAAACTTTCAGACCAAAGACATATAGCTATTGAATTAGTTGCTAGTACATCCCTATTTTTGCAGTTTCATACAGTCACTGTTACTGAAAGAAAGGTACATATAGGCTTTCATGAAAAGTACAAAATAAGCTTTATTCAGTTCTCGAGTCATTCCACTGCTGCTGATGATTGTGGGTCTTGCTTGTCCTCCAGTGCAGAAGCACCATAAGGCCAGTAAACAAACACAACCACAGCACTCAACT

Function

GO: NA

KEGG:

id description
K17351 TSPAN10; tetraspanin-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249994 lncRNA upstream 27301 14433827 ~ 14434055 (+) True G211032
TU249993 lncRNA upstream 28061 14432370 ~ 14433295 (+) True G211031
TU249968 lncRNA upstream 81459 14378543 ~ 14379897 (+) True G211006
TU249711 lncRNA upstream 471463 13987875 ~ 13989893 (+) True G210784
TU249744 lncRNA upstream 533529 13922914 ~ 13927827 (+) False LOC113528277
TU250028 lncRNA downstream 2956 14466438 ~ 14466674 (+) True G211058
TU250048 lncRNA downstream 18331 14481813 ~ 14482016 (+) True G211076
TU250078 lncRNA downstream 99038 14562520 ~ 14563021 (+) True G211101
TU250095 lncRNA downstream 141235 14604717 ~ 14692759 (+) True G211117
TU250097 lncRNA downstream 155747 14619229 ~ 14621407 (+) False socs3a
XM_026916065.2 mRNA upstream 14193 14443634 ~ 14447163 (+) True im:6904045
XM_026916060.2 mRNA upstream 19024 14435836 ~ 14442332 (+) False LOC113527900
XM_026916071.2 mRNA downstream 12764 14476246 ~ 14478966 (+) True LOC113527904
XM_026916787.2 mRNA downstream 27906 14491388 ~ 14499569 (+) True timp2b
XM_034309828.1 mRNA downstream 37826 14501308 ~ 14527529 (+) False usp36
XM_026916094.2 mRNA downstream 37826 14501308 ~ 14527529 (+) False usp36
XM_034309827.1 mRNA downstream 37842 14501324 ~ 14527529 (+) False usp36
XR_004579399.1 other upstream 968506 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 2272767 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 2883533 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 2924191 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 4043475 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 1349760 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 1454735 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 1676848 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 2623809 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 3720537 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile