RNA id: XM_026916598.2


Basic Information

Item Value
RNA id XM_026916598.2
length 3477
RNA type mRNA
GC content 0.41
exon number 5
gene id cbx4
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12116439 ~ 12122136 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTATTTCAGCCGCTTACCGCTAACGAGCACCGAAATACGAGCAAGGgtcagggagagggagagagagagcgcgagggagagggagggagggttCGCGAAAGAATTCATCTCAGCCACAGTGGCTGTAAaactcaccaaaaaaaaaaaaatactgctaaAGCATCAACGGTTGAACgagaagagagaggggagaaaaTCGCGCTCTCGCTTCGCACGCCTCGGAGCGAGACATGGATCTACCTGCCGTCGGAGAGCACGTCTTCGCGGTGGAGGGCATCGAGAAGAAGCGCATACggaagGGTAGAACCGAATATCTGGTGAAGTGGAGAGGATGGTCGCCGAGaTACAACACATGGGAACCGGAGGAGAACATCCTCGACCCGCGCCTTCTCGTCGCCTTCCAAAACAGagagagacaggagcagCAAATGGGATATCGCAAACGAGGACCTAAACCCAAACATCTTCTGATCCAGTTACCTGCGTTTGCACGGAGGTCCAGCATCCTTGCTGATCTTCAGGAGACATCACTGGATGAGGAGAACCAGTTCAAAGTGGATTCACTTCAGATGCACCGGTCACAGCCTCAGCATTACCAGCTCAATAGCAAAAAACATCACCAGTACCAGCCCAACAGCAAGGAGATCCCGGCAGAAGCTCACACCAATGGCAAGAAGAAGCACTTCTATCAGCTAAACAGCAAGAAACACCATCATTACCAACCAGACCCTAAGATGTATGACCAGCAAACCACAAAGCCTAAGGAGGTTAAAGGGCATGACCCATCTATTAAAGGATGGAACCTCCCTCCAGCCTTGCAACAGAAATGGGTGCGTGACAAGGACACTGGTAGCTTGAATAAAGTGAAAGATCTATCCGTGGAGCATAAGCAACTGCTTATTCCCGCTAACAAAGAAGACCAAACGGTAAAGACAACCTCGAAAGATCCCCTGCTTTCCAGTGGCATCAGCAGTAAGATGAAGATCAtcaggaacaaaaacaaaaatggccGAATTGTCATTGTCATGAGCAAGTACATGGATAATGGGGTCCAGCCTTCTAAAGTGAAAAACAGGGATTCTCCCGGAAcagagaaaccaaaacaaactgaGGAGACCATAAATGGCAATGCAGCCAAACTTGTAAAAGTGACACCAGGGCAGGAGAATGGTGCTCCTAACCACTCAGGAGACAGTGCATGTATTACCAGTGAATTTGTTCACAAAGTGCCCCACAAAAAGTTTGAGCTCTCAAAAGCAAAATTGAACACTGAGGCAGGTCACAGAACAGAAAAAGAGGTGAATAAAATCAATTTATCACACAGTCACTCTGTGCAGCTGTCCACCAAAACTAGCTCTTCACCCATATCAGTTGGGGAGGATGCTCCATCACAAAAGGACTCCACCAACCACCATCTCAGCCATCGTAAACGGAACCTGTCAGAACCTAACAAGGCTGCAAGTGATTGTAAGAGGTTCCTCAGCTCCAGAAGTATCAGTGCTCCCAATCCGGTCGTCGATTCCCCTCAGAGGGAACCTATAGACCTGCACTGTTCTGGCCAAATCACCAGTGGGGGCTACAACTACACCGTTACTGACACCATTCCTGATGAACCAATCGACTTAAGCTGTGGGAGGACTAGGTTACATGCAGAAGCTCCCACAGAGTCCCACGTAGCAGTGGACGACGCACCTGAGACTTCAGAAAAGTCGGAAGAACCAGTCAGCTATTTTAAGCCATTTTCAGGTAATATCATCATTACGGATGTCACCACAAACTGTCTGACTGTGACCTTTAAGGAATACGTCTCCATTTAACAGCCTTCAATTTGATACACTGAGGACTTCTGATACTTATATGGATTTGTAGATATGTAATTATTAGAAGAATTCTGTACATATGTATCTATAATTTGTCATGTatagaaaagaaatgttttcttttttttgcagtgtaggtttttttttttatttcacttggaATTTGTTAAGGCCTGTACATGCACAGAATAAAATGGAGTGTtttgaatgtttaaagacaGGTACAGTTTGTACTCTGAAGAAATCAATATGGGAGGACATGCTGAGCTTAAGAGGTTGTTAATGCATCACTGAACAAGCACTTACTTACTAAACGGAAATGGCCGTTACATGGACTTGTGTGCTTCATGTTGAGCACTATTTGAACCATCTCTTTTTAAAGATTGTACTTCTTTGCAAACACAGTGCAGACACATGGTTTTACAATATTACACTTTTCTTGCAAACGAGTCTGTGCCATTTTAGGCAGTTAGAGTTGAGCTTATTCTAATGTCAGATGGATATTCAGGGTGTtttgcagagtttttttttatttttaatatatattttgcttAAGGCCACACTTGCATTGCTGCATAGTTCTGTTGTGAAAGATACAGGTCTTTGCTGTGCAATGTTGAAATAGCCTCAATCAGACACACCACTGTTTGCTCATTTGGTTATATTTACCTACCCATTGAATGTGTAAGCTGCACTTTGTCATAAGTTAAGATACTTTGAAGAAGGCCTAAATGACACTGATCAACAGGGTAGATCCTCCCTTTCATACTGTGGTTAAATGTCATACTGATTAATTTGTACACCAtcacgtcttttttttttctgtgtgagtATAGAAACGTTTCCTGAGAGTCTACATATTACTTCATATTTAACTGCTGAAATGGTTCTTATTTTTATGCCATGCTTTTTCTTAACTGTCTATATTTTTGGTGTGACGTACTAATAACAATGTATGAccaaacaatttattttagaCAATTTGTAACCCTGTAGCACATAATATTGTAAAACTGCTGCTAAAGTGTATTACTTAGTTGAAGTAATATGTTATGGGAAAATGCAGAATATGCTGTAGTCAACATTAGAGTCTAAATTTGCCTTAAATgaacaaagtaataataatagtgtatCAATATTTTACAAAGCTTATTGTAGTGAAACAATCATAGCCAGTACCATATCCAGACAGTAAATGTATCAGGCTTTTTGAGTGGACCTGACTTAACACTCGTGACTGTAGTTATGAAAGACCTTTATCCGTGGAACTGACAAATCTATCGATATAGACGTGGTCAATAGATTTGGCTTGATTACTAGAAGCACAACAAATGCATCAATGCCAAAAACAAGACCATGAAATATTTGGTGCTTTGATCATCAATGATATTTTAGAAAGGCGGATAAGTTCATTCAGACAGAGATGTGGTTGATTCACTGTTTCATTTAGCAGTTTAGTTTTGCAGATCTTAAACTATGTGCCTGTGATAATTGCCAGTATGACAACAGAGGGAGTCCACTACTATTCACATGTATCAAAAATGTTGTTAATTTAAGTAACTGCCCTCCGATACACACAATACCGttgcaattatttaaaaaaaaaaaaacattaacaaaaccCAACTTTAATAAATCTTGTCATGATGTTTCAGA

Function

GO: NA

KEGG:

id description
K11452 CBX4, PC2; E3 SUMO-protein ligase CBX4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248505 lncRNA upstream 30430 12085128 ~ 12086009 (+) False tbc1d16
TU248507 lncRNA upstream 54657 12061569 ~ 12061782 (+) True G209798
TU248481 lncRNA upstream 95307 12019863 ~ 12021132 (+) True G209775
XR_003402931.2 lncRNA upstream 293529 11808261 ~ 11822910 (+) True LOC113528367
TU248059 lncRNA upstream 407503 11708728 ~ 11708936 (+) True G209410
TU248585 lncRNA downstream 11124 12133260 ~ 12133471 (+) True G209863
TU248587 lncRNA downstream 14637 12136773 ~ 12139867 (+) False LOC113528416
TU248618 lncRNA downstream 79102 12201238 ~ 12202277 (+) True G209884
TU248620 lncRNA downstream 86100 12208236 ~ 12208486 (+) True G209886
TU248621 lncRNA downstream 86750 12208886 ~ 12209124 (+) True G209887
XM_026916961.2 mRNA upstream 30381 12049407 ~ 12086058 (+) True tbc1d16
XM_026917101.2 mRNA upstream 70935 12033886 ~ 12045504 (+) True gaa
XM_026917084.2 mRNA upstream 196776 11861586 ~ 11919663 (+) True grin2ca
XM_034309874.1 mRNA upstream 266103 11830046 ~ 11850336 (+) True rfx1a
XM_026916600.2 mRNA downstream 7455 12129591 ~ 12132297 (+) True cbx8a
XM_026916951.2 mRNA downstream 13133 12135269 ~ 12140371 (+) True LOC113528416
XM_026916816.2 mRNA downstream 36567 12158703 ~ 12190070 (+) False arhgap17b
XM_026916815.2 mRNA downstream 36569 12158705 ~ 12190070 (+) True arhgap17b
XM_026916817.2 mRNA downstream 36570 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 538616 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 579274 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1698558 10349402 ~ 10417881 (+) False G208781
XR_003402925.2 other downstream 36570 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1353692 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3691106 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3796081 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4018194 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile