RNA id: XM_026916612.2


Basic Information

Item Value
RNA id XM_026916612.2
length 4344
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC113528203
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7483781 ~ 7497533 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGCGGTTTCAAATTTTCTAAAGCGTGCTGTAACTTTCTGACAGCACAAGTCCCCGATGCTGTATTCAACAGCGATTTTACATCCGAGGAAGTTCCTTCTGCAGAACCCTACTATGGGGTTCTGCTCTTCTTAGATATATCAGgattcaCCGCCTTAACAGAAAAGTACACGGCGATGCATGAGCAAGGCCATGGGGCGGATGAGTTGACTAATGGACTTAACTGCTATATCAGCAAACTGGTTGAATGTATCCTTGAGGAAGGTGGCGACATTCTGAATTATGCAGGTGATGCGATTCTGGCTCAATGGATAGTCGAGGGGATGCAGACAAGTGATGTCATATCTCTGGCTGTCAAATGTGCCTTGAAAATTCAGAGTGAGTGTGGCATTCAGGAGATGAAATATGACTGCGAGCTACGTGTCAAAATAGCCATATCAGCTGGGAAACTCTCCAAAATAATAGTGGGAGAGAAATCCAGGCGTTTTTATGTCATCATTGGCCCAGCTGTGGAGGAGGTGCGATTGGCTGAGCCTCTGGCAAATCCTGGGGATGTTATTCTCTCACCTGAAACGTGGAAGCTCTGCACACTAGAGAACTTGGTCATCGAACGTATTGAGAATAAAAAAGCTGTGAAGATGCTCCGTTTCAAGAAAGAGCCCAGATTCTCAGTGGAAATGTACCATCAGATGCTGAGCAAGGACAACAAAATCCCTGACAAAAGCTGCCTGAGATCAGCTTTCCAATCAATGCctgacatagagagagagaacttcCTCAGAAAATATATGATGAAAACCGTCTTGCAAGACATTGATGATAACCAGCCACCGGAATTCTCATCAGAGATACGGCCTGTGACTGtcatgttcattaatatgacataTGTTTCGGGTTATACTCCGACGGAGCTGTGTGGCTTTGTTCAAGAAGCCACCGTCATTATCAGCAAGAAGCTCAGTCCCCATGGCCACATCAACAAGATATTCTTTTTCGATAAGGACTGCACATTTCTCTGTGTATTCGGCTTACCTGGGTATAAGAGAAAGGATGAGAGTGCTCTTGCACTGATGGCTGCCGATAGTATACACAAGACCTGCTGCCAAAAACTGAAGCATTTAAAGACTATCTCAGTTGGCGTAACTACAGGTCTAGTGTACTGCGGTATGGTGGGCCATCATTTGAGGAATGAATACACAGTAATGGGAGACAAAGTGAATCTGGCTGCCCGGTTGATGATGTACTACCCGGGGATCGTATCATGTGATTGGGAGACCAGGTATTACTCTGGCCTGCCTTCTTGCTGCTTCATGGAGGAGACTGAGAAAGATCTGAAGGGTGTGAGCGACCCGGGGAAGATCTATCGCTTTGAGCCCAGAAATCATCAAAGGCATGTTGATGAAGCACCAGTGGCATTAGAGATAGAAAAGGACAGCGTGGTTGGGGACATGCATCGCACTCTAACTGAGCTGAACGTATTGGGGGCAGCTGAGGGGATGACAGTAAAGCGTGCTGCCTTCCTTGGCCGCACCTTCACCACTGAGATGCTGCTCAACATCTTGCCCAGTTCATTAAAACAGAAGCTCAACAACATCCTAATGACACTCTTCAAATCGGGTGTCTTCAAGTGCGCCTCCAACCCAACAAACGTTTCATCAGCCAAGACTGAAGAGGCAGAGCTCATCTGTTACTGTGAGAGCAACAGcacagatggaCTGGCCTCAGTAGATGGTGTGTGGAAGTGCCAGCTGATGTGTTTCTGCAAAGATATAGTAATGGAGATGACCTATCAGCAGTTGCTGAAGGAGCAGAAGCAACAGCTCCATGGAATTTGTGCCAGCTACCTGGAGAAAAAGGCATACCGCTGCAACAAATGTGCCATTGACACTAACAGCACGCTGAGTAAAAATGTCCTGCACCTGATTGCGGGAAATGGtaATGATAGAGAGAACTTCCTGGCCAAGGTGGACTCGATAGTGAAGGAAGAGCAGGCCAGGACGACTGCAGGCTGCAGGTGCGAGTGCGCTCAGCTATTGGAGACAGTGCTGATCCCTATAGTGAGACACTGGAGAGGAGCAGGACACGTCTCCAGGACGTTTTACTATCTGCTGGAGTGTGCGGCTGTCTGTACAAGACTTTCTGATGACCTCAGGGCAATGCACTTTTTGAAGGAGGCCAAAATCATTTTGGAAAACCTAAACGAAGAGAATCCTATATTTGAGTTAGCGGCTCCTGGATCTCTTCAGATCTGCGAATTTGACCAAGCCGTTATGCATCGGCTCACAGGAGAGATTCTGTTTAATGCAGGCAACATTTTGGAGGCAGAGGAGAATTTCGAGAAAGCCTTGAAGCTTCTCAACTGCAGCCTCCCCAGTAATGGTGTTGCACGATCCATAAAATTAATTTGGGAGAAGATCAAGGAATACCGCTATCAGTCCAGAAACTTGGAGAGCCCAGAgaaGCGGAAGCTAGAATTTCTGCATGAGCAGATCTCTTGTCTGTCCTTCCTGTGGCAAATCAGCTGCATGCGTGGCCAGTCCAAGAGTGCCTCATTGGCCATCACTATGCAGGGCAACTTGGCCACTCGGAGCACCGATATGTTCGAGATGCTCTACTCCACCATTGACTATCTCCAGTACAGTCAGTTTGTGAGTGAGGAGAGCGAGTGCAGGAGTCTTGAAGCCTGGCTGTGCAGGATGTGCGCCGGACTGTCTGACTGCGCTGAGAGCCGGAGGGTGATCAGCCACTTGACTCGCACCCTTGCCATGGTTCAGCTGTGCACAGGAAACCTGAAGCAGTCCATCGATTTCACTATTCGAGCTCAGCAGTTGGGTGGACTCTGTTTGGATGCAAGGGCCATTGGTGTGTTACATCTGGCTCTGCTCTTCACTGGCAGATACGAGGAGAGTATGCAGCTGATCTTTAAACTGGAGAGCCTCAGCAATGAAAAGTCCAGCAGCATAGCTAAGGGCTGGTTTTATGCTGCCTGCTTGAACTTCCTGCTATATACTGGCTTTTCACTGCGACCATTTGAGGAGTGTTTGGCCTTCGTGAAAGAGTGTCAGTCAGATGCCAACCTGGTAGCCGATAAGAGTCTGATGATGCATCTGTACTCGTCACTGGCTCTGTGgtaTGCACGGCTGAATGAGTGGGACAACGTTGCAGTCTTCTACGATAAGGCGTTCGCAATGTACAGTCAGCTTCCTGCCTCCATCCACTCCATCAGCGGTGTGGCCGCCTTCCTAGAGTGCAGTGTTCTGTTGTTCAAGAAAGAGATGGCTAAATCCAGCAGACACTGCAAGAAGGACTACAAAAGAACACTGAAGCTCTTTTCAGACTTTAGGCAGCGCTTTGGCAGAAATCACATCTTTGTCCCTCGTGTGATGCACCTAAATGCTTTCCTGTACCAGCTGGTTGACAGGAAGACGCTGGTAGAGGACCTCCTCATGGATGCTCTGCAGCTGTGTGAGAAACAGGGAAACCTGTTACATCACAAGCAGATCAAGCAGAGCCAGGCCACATGGTCTGGTGCATACAGTCAGACTCCAGCTGATTGCTCTGCAGACATTATGACCATGTCCTGTTGGGATGAGGAAGCAATACTCAAGCCTGAGGAGCTGTTTCAGTATTGTCTTAATCCAGAACTCATCTCAGAAGTGCATTCCTCAATTGAAAGCAATCATGGCAGATTGCATGAACAGCCATCCCAGGAGTGCATTACAGACCATCTTCATCAACCTGACCAGCCAGAGCACCGGAAGACTCAAGGTAAAAAGCCAGCTGTGGATGTGTGTTCCTGCAGCCCTCGGTTTTGGCATTGGATGCTGGAAGTGCTCTTCTTGCCACCTAAACCAGATGATGCCGGAGGAGGAACCTGAtgctccctcacacacacacacacacacacacacatacacaatttaGCCAACATTGACTAACATTATCCATTGTTATCAGGCATTCATAGACTACAATTTCAGCCCTAAAATTACTGTTCAGTTTTACCTTTTCTAACCATCAGGGTGGTGTTTAACACCTGGATAACCCTGCCATAAGGTAATGAGGAACTGACGCACCTATGGCTATCTAGGAAGGGGTTCTGAGATGCTCGCCACACTCAGATCTGGAGAGTCTGGAGACGAGTGCTGGCTGAGCACCAAGAGGAGTGCTCGGACCTCAGTGTTCAATACCATGTTAAACGCAACAGCTGGTGGTTATAAAAGATGAAATAGAACAGGCTTCATAAAGTATCTGGTGTCATGTAGAAGAggataggttcccttttgaatctggttcctctcaaggtttcttcctgatgatatttcagggagtttttccttgca

Function

GO: NA

KEGG:

id description
K11265 ADCY10; adenylate cyclase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245322 lncRNA upstream 40028 7443069 ~ 7443753 (+) True G207157
TU245320 lncRNA upstream 43500 7440077 ~ 7440281 (+) True G207155
TU245299 lncRNA upstream 95238 7386016 ~ 7388543 (+) True G207140
TU245255 lncRNA upstream 161851 7319138 ~ 7321930 (+) False spsb3a
TU245258 lncRNA upstream 165421 7318027 ~ 7318360 (+) True G207111
TU245526 lncRNA downstream 66770 7564303 ~ 7567813 (+) True G207309
XR_003402956.1 lncRNA downstream 188518 7686051 ~ 7691669 (+) True LOC113528563
TU245704 lncRNA downstream 357898 7855431 ~ 7855889 (+) True G207483
TU245778 lncRNA downstream 510663 8008196 ~ 8008411 (+) True trnas-cga_1
TU245802 lncRNA downstream 536392 8033925 ~ 8035373 (+) True G207570
XM_026916038.2 mRNA upstream 66985 7407546 ~ 7416796 (+) False dhrs7b
XM_034309664.1 mRNA upstream 66985 7407560 ~ 7416796 (+) False dhrs7b
XM_026916039.2 mRNA upstream 66985 7407646 ~ 7416796 (+) True dhrs7b
XM_026916795.2 mRNA upstream 76630 7389075 ~ 7407151 (+) False cramp1
XM_026916794.2 mRNA upstream 76630 7390144 ~ 7407151 (+) True cramp1
XM_026917203.2 mRNA downstream 362691 7860224 ~ 7880064 (+) True itga2b
XM_026916785.2 mRNA downstream 386616 7884149 ~ 7931511 (+) True fam171a2a
XM_026917174.2 mRNA downstream 435833 7933366 ~ 7950248 (+) False syngr1a
XM_026917173.2 mRNA downstream 435833 7933366 ~ 7950248 (+) False syngr1a
XM_026917175.2 mRNA downstream 435833 7933366 ~ 7950248 (+) False syngr1a
trnac-gca_21 other upstream 184097 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 211250 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 367846 7108178 ~ 7115935 (+) False LOC113528597
XR_003402939.2 other upstream 387102 7084441 ~ 7096679 (+) False eftud2
TU244415 other upstream 1222924 6254468 ~ 6260857 (+) False LOC117598831
TU245701 other downstream 355658 7853191 ~ 7853509 (+) True G207480
trnas-cga_1 other downstream 510653 8008186 ~ 8008267 (+) False trnas-cga_1
XR_003402909.1 other downstream 1399085 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 1564032 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 2446773 9944306 ~ 9979954 (+) False rapgefl1

Expression Profile