RNA id: XM_026916617.2


Basic Information

Item Value
RNA id XM_026916617.2
length 4467
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC113528209
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15472866 ~ 15501425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCATGCGTACTGTCGGGAAATTGTATTCGGCTTAGTAGTCACAGCTGGCGAGGAGTAAACCAAGCAGCATGGAAGATATTTCGCCTTTATAGTTAGCATCGAAGTAATTTtcgggaaaaaacaacaacaacaaatacataCTGAACCGTCGAAGTGTTGAATTTGTTCTATGTGAGCTGGTTTAGCGTTGTGGAAGATGGGCTGGGGTGTGTGTAGCAGGGCCCTTGTGTGGTGCATTTATACAGCGCTGTTCAGTACCCTGCTGTTAAAGGGCCACTGCAGTCGCAGCAGCGTCTCCCTGCCTGAGAGTTTACTCTTTGTTTCCACTCTGGATGGAAACCTGCACGCCGTCAGCAAGCGCTCTGGCTCTATTAAATGGACACTTAAGGAAGATCCTGTTCTTCAGGTCCCAACCCATGTGGCTGAacCTGCATTTCTACCTGACCCTAATGATGGAAGCCTGTACTCACTAGGAGGGAAGAACAATGAGGGACTGACGAAACTGCCCTTCACCATTCCTGAGCTGGTCCAGGCTTCCCCTTGCCGCAGTTCTGATGGAATCCTTTACATGGGTAAAAAACAGGACGTGTGGTATGTGGTAGATCTGCTGACAGGAGAAAAGCAGCAGACTCTCACCTCCTCTTTTGCTGAGACACTGTGCGCATCGTCGTCGCTACTTTACCTAGGTCGCACAGagtaCACTATCACCATGTATGACACCAAGAGCCGAGAACTGCGGTGGAACGCCACTTACTCTGATTATGCATCCACACTTCCGGATGATGATACCAAATACAAGATGGCCCACTTTGTTTCAAATGGCGATGGCCTCGTTGTAACCGTAGACAGTGAGACAGGCGCAGTGCAGTGGGTGCAGAACTATGACTCTCCCGTGGTGGCTGTGTACATGTGGCAGCGTGAGGGCCTGCGCAAGGTGCCACACACCAACGTAGCCGTGGAGACACTGCGCTACCTCACCTTCACCTCAGGCCAGGTGGGACGTATCACGCAGTGGAAGTATCCTTTCCCTCAAGAGAGGAAGCTCGAGGACAAACTCATGTCCACCCTGTATGTGGGAAAGTACTCCACAAGCCTCTATGCATCTCCCTCTCTGGTGCATGATGGAGTTACTGTTGTGCCACGTGGTAGCACTTTTCCAATGTTGGAGGGTCCTAGTAGCCAGGAGGGCAATGTGGAGGAGGACCAAGAGTGTGTCATCACGCCCAGCACCAGTGTCAAATTCAATGCGGCCCTGAAGGAGCGGAACCGTGTCAACTACATGAGGAACTACCTCCTACTTATAGGTCATCACGAGACTCCGCCTGAGGCTCATAAGAAGATTCTGGAAAAATTTCCGGATGGTTTTCCTCGTCAGCACAGCAACGTCATCCCTCCTGCTACAGAGCAAACTATCGAGGAGAAAGTGAATGAAAGTGGGATGGAGGACAGCAGCCCCTTGCCCCCTCCTGTCCATCCTCTCCAGGAAAAACAGCCTCGCCCACTCCGCTCTGAAGCACCTGTGGACTCCATTCTCAAAGACATGGCCACCATTATCTTCAGCACTTTCCTCCTGGCTGGCTGGGTAGCCTTTATCATCACTTACcccaagAGCATGCAGAAGCAACAGCAGCTGCAGCACCAACAGTTCCAGCGACAAATGGAAGAGAAGTTGGAGctcctacagaaacagcagcTGCTTTTCCAGCCACCTGGCGACCTGCTGCCTGACGGTGATTTCCTGGAGGTGGCACGTGGCCGTGCTGAGAGCTCCGGCCAAAGCAGCGCTAATGCCACACCACGTGCTTCCAATCATTCCAACCTGTCTCATTCCGAACCAGGGGGTTCTGCAGCTGAGCATGACGATGGAGAGGACGAGTCCAGCATTGTTCGAGTTGGAAACATCACCTTTAATCCTAGGAATGTTCTGGGACATGGTGCCGAGGGCACCATCGTATACAGGGGTCATTTTGATAACCGCCAAGTGGCAGTGAAGAGAATTCTCCCAGAATGCTTCAGCTTTGCAGACCGGGAGGTGCAGCTGCTGCGTGAGTCAGACGAGCACCCCAATGTCATCCGCTACTTTTGCACGGAGCGTGACCGCCAGTTCCAGTACATCGCTATAGAGCTGTGTAGCGCAACTCTGCAGGAGTACGTAGAGCAGAAGGATTTTAATCGCCATGGGCTGGAACCAGTGACCTTGCTGCAGCAAACCATGTCTGGACTGGCACATCTGCATTCGCTCAATATAGTTCACAGAGATCTGAAGCCACACAACATCCTGGTATCTATGCCGAATGCCCATGGGCGTGTTCGTGCCATGATCTCGGACTTTGGCCTGTGTAAGAAGCTGGCTGCAGGCAGACACAGTTTCAGCAGGAGGTCTGGTGTTCCTGGCACAGAGGGATGGATAGCGCCTGAAGTGCTTAGTGAAGATGCCAAGCACAACCCAACGTGCAAAGTGGACATCTTTTCTGCCGGCTGTGTGTTTTACTACGTGGTATCACAGGGCTGTCATCCATTTGGAAAGTCCCTGCAGCGGCAAGCCAACATTCTCCTGGGAGTCTATTCACTGGACCACTTGCAGCCAGACAAGCATGAAGACATTGTGGCCATGAACCTGATAGAGCAGATGCTGAGTGTGGAGCCCGAGAAGAGGCCATCAGCAGAACGAGTGCTCAAACATCCCTTTTTCTGGAGCCTTGAAAAACAGCTGCAGTTCTTCCAGGACGTGAGTGACCGGATTGAGAAGGAGCCACTAGATGGACCAATCGTGAGGCAGTTGGAAAGAGGGGGGCGTGCCGTGGTGAAAGGAGACTGGAGGGAGCATATCACAGTGCCTTTACAAACGGATCTCCGCAAATTTCGCTCCTACAAAGGCGGCTCTGTTCGAGATCTTCTGCGTGCCATGAGAAACAAGaagCACCATTACCGTGAGTTACCTGAGGAGGTTCGGGAGACACTGGGCTCCATTCCAGATGACTTTATCTTCTACTTCACGTCCCGCTTTCCCCAGCTGCTGCTCCACACACATGTGGCCATGCGGTTGTGTGCCCATGAACGCCCATTTCTGCCCTACTACCACAGCTCAGAGCTGCCTTCACGGACCATTACCACACAGCCTGAGCCCAAACCCCCAGAGCCAAGTCAAAAGGACCTAtcttcattcacacattcagaacccacagaactgccattAGACTCAGACTTTCCCCCACCATCAGATTCTCCAATACTGCCTGAACATACTCAACATGTGCAGCAGGAGCAAAATGCCTTCTCCATGCCATCCAGACAAGAAGATACCGCGCTGTAGACGAAAGGGGTCGGTGGATTTGCTATTCTGAATGGACACATCTCTCTGAGTTGGTGCAGTCCAGGTCTGCAGTGCCTGAGCTGTGTTACTTACATGAGGTGCCATCCCATATCAAAGTGCCTTACCCGTTTAAGACAAAATGGCTCTTTTCAGAGCTGCCTAGTTCCTGGTGAAGCTAGGCTAGTCTGGATTTGATCCTGTTATTTGGACCATGGTATTATATTAAGAagctgaaggttttttttattattattattgcaactCTTTTGTAAAGGCTGAAAACTGTGATGCTTGCACACGCATGAGGCAAGGACTATTTGTATTGAACTCTTAAAGTTGTCAAGAGTAATTCTACTGTGCAATGTCAGTGAAACTCAGTCAGAGACCTTGctgtcaaatatatatatatatatttttgtacatatCTTAATTGGTGATAATCCGTCAGCGTGGCCAGTGTGCCTTTTTAATCTCGCTGTTCTGTGTCTTGGCTGTGTGAAGTCAGAGGGGGGGATAACTGTTCCTGCCTGTTGCTATGCTGCTGCTGACCTCAATTGTATCCAAAGGGAACTGGAATATTCATGTTATGATATTCATTTCCGTTTTTATCATCATAGCTTTTATCATCAGTTGTCATTGCAAATTATGTTGTACAGTTTATATGTCGACACATTACATAATTGatataaacaaaatcaaatgtaatttttaattttatctatggctgttaaaacattttagacAGAAATTTTAATAGGTGACATTTGCAAAAACAATTATCAGGCCTGAAGAATATAGATCACATATCATAAATTGAGTCAAGTAGTCAGATTAGTTCTCATTCTCTCCCCTGCCATTGAATGTATGCACACTTGGGCCACTTTCAAGCACAGATTAAATGAATGCAGGTCCAAATTTAATTGTAGACCATATTCTCTCGGTTTTAATGCATTAAATGGGAACAATAGCCACACATTTAACTTTATATGTAGAAATTTGTTTGTGAATGTCCATGAGGggcatattaatttatttaattttctttattttcaacaaGTTGAAAAAATTCCAAGAAcatgatttaatcttttttttattgttaaaagctGCTATTGTACAATGCTAAACTCCTAATAAAGCATTACAACCTAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006468 protein phosphorylation biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0005524 ATP binding molecular_function
GO:0004540 ribonuclease activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08852 ERN1; serine/threonine-protein kinase/endoribonuclease IRE1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250602 lncRNA upstream 1162 15469549 ~ 15471704 (+) True G211540
XR_004579350.1 lncRNA upstream 268208 15203522 ~ 15204658 (+) True LOC117598819
TU250383 lncRNA upstream 462215 15010142 ~ 15010651 (+) True G211338
TU250374 lncRNA upstream 481416 14988144 ~ 14991450 (+) False LOC117598752
TU250373 lncRNA upstream 481463 14988144 ~ 14991403 (+) False LOC117598752
TU250935 lncRNA downstream 204324 15705749 ~ 15706001 (+) True G211838
TU250953 lncRNA downstream 338347 15839772 ~ 15840000 (+) True G211856
TU251141 lncRNA downstream 644954 16146379 ~ 16148542 (+) True G212033
TU251137 lncRNA downstream 650830 16152255 ~ 16153553 (+) True G212029
TU251138 lncRNA downstream 652191 16153616 ~ 16154250 (+) True G212030
XM_034310300.1 mRNA upstream 3460 15437391 ~ 15469406 (+) True tex2
XM_034310301.1 mRNA upstream 3460 15445655 ~ 15469406 (+) False tex2
XM_026916236.2 mRNA upstream 100683 15343257 ~ 15372183 (+) True axin2
XM_034310111.1 mRNA upstream 129919 15209139 ~ 15342947 (+) False cep112
XM_026916402.2 mRNA downstream 8502 15509927 ~ 15520567 (+) True samd9l
XM_026917304.2 mRNA downstream 21668 15523093 ~ 15534280 (+) True mafga
XM_026917305.2 mRNA downstream 21668 15523093 ~ 15534280 (+) False mafga
XM_026916011.2 mRNA downstream 47079 15548504 ~ 15566563 (+) True LOC113527870
XM_034310047.1 mRNA downstream 115858 15617283 ~ 15663689 (+) True rnf213a
XR_004579399.1 other upstream 1980016 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 3284277 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 3895043 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 3935701 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 5054985 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 311817 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 416792 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 638905 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 1585866 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 2682594 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile