RNA id: XM_034310042.1


Basic Information

Item Value
RNA id XM_034310042.1
length 5424
RNA type mRNA
GC content 0.49
exon number 11
gene id sh2b1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8993518 ~ 9006845 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAACTTCTGGATATTTTTGAGGGTATGTGAAGATACAGAATTTTTGCTCACACAAGCAAAGCGCCGGTCTCCAGTTACACCCTGACCCGAAAATGgCCACGGATCCACTCGTCTGGTTTCTTGTAGAGCCCTGAAGAAAAACAAGACCTTAACAGCTCTGCTCCTCACCGAACACTAACTCTTCATAATCCTTTTGATGTATTCTAAAGTCTGTCAGTATGCggattcttatatatatatatttaagttaGCACCCACTGCTTTATGCAGAGTGTGCAACCCTTTGTAAATCAGcccagttgttttttttaaatgggggGAGACTGTCATCACTCCTTTTTTGGTCCATTACTTTTCCTAGTCCTGTGGAAAGCTTCACCCCATGAACAGAGCGTGCCTTCTCCTGACCCCATCAGTTTGTGACAATCGCTTGATCCTCAATCAGAAGGCTTTAGTGATTAGTCTGCAAATCACAGCAAGTCAGTCGCTCATTTAGTCAGTTATGAACGGCTCCTTATTAACCCCGCCCAGCCCACGGGCTGCAGCAAACTCATCCCCTCTTCCTCCATCCCCATCTCCCTCACCTTCTCCTCCGTCTCCATCATTGCTGCCCCTTTCTGTGCGTCCCCCACCTTTACCCCCTCCGGCTTCTGGCCAGCCGCTGTCTTCTCTGTCTGACACACCAACTCCCTCACCTTCTCCCTGCCTTAGCTGGACCGAGTTCTGTGAGCTTCATGCCCGGGTAGCCGCTGGCGATTTTGCCCGTCACTTCAGGGCCTTTCTCCTGGAGAATCCACATTATTCCCCCGATTCTGCTGCTGCTTTCTGTCGCCGCTTCACTGACCGATTTGTTCGGCATTTTGAGAGTGAACTTGAGGGAAGTGGTGCAGTGAGGGAGGGTACAGGGATTTGGGTCACTCAGTCTGATGGCACGTCACTGGAGGAAGAGCCAACGTCTCCACCACTTCTGCCACCTGACGCTGCTGCAACCTGCCTGCCGACACACATCAGGGCTCCACCCAAGCCACTTTCAGCTCGGCAGGGATTGGACACTCGAGGTGCGGATAGATTTCAGAATCCCACCGTTTTCCAGGACTCATATGCTCATGCACAAATTCTGCCACCTTCTTCTTCGTCGTCTTGTTCATCTTCAATGGGCGGGAACAACGGTCGAAGGGAAGATAGGGCATTGACGGTTAAGAAGTATCCTGGCCACTTGCCTGGTAATGGAGACCTggaagaagaggaggacagCTGGGTGGGGCCAGTGACAGGAGAGGAGGCGGAGTCAGATGAGCTAGTGGGGAAGGACTGCGAGGCAGAGGGTAGTACTCTCACAGACAGACCTGATGGCAGCCTGACACCACTAAGCCCTGCTTCTGGGGGACCGCTAAACTCCGGGTCAAAGGGCAGCATCCCGGGTGCAGGTGGTCACTCCAAAAACAAACTAAAGAAACGCTTCTCCCTGCGCAACGTGGGCCGCAGTGTGCGGGGCAGTGTGAGAGGTATCCTGCACTGGCGGAGCTCCTCTAGTGACTCCCCTCAAAGCTGTGGCTCAGCTAATGCCACGCCACTGCCCTCTAGCTACAGCTACACTATGGGCCTGCAGGATGCCAAGAGGAGTGCTCAAGGTGCCCCAGCCTCGCTCCCCGTCTCACTTTCTCTGCccctctcactccctcactcatcctcctcctccctgcCACCATCATCTTCCAGCAGCGCcacctctctctccttctctgaaGCTCGCGATCGGAGGAGGAGTAACGGAGAAGGCGAGAAGGAGAAATGGACCCACAGGCTGGAGAAGCTGCGTCTGTCTCGGTCTCCACCACCAACCCTACAAGCACCTGTGGGACCCACGTCAGCCTTGTTGCCCTCTGCCCTGCCTTCTAGGAAGACAGGCAGACTTGTACGAGAGGGAGGAGTGAATGTCTGCTCCTCCGCAGATGAATTTACTGGCTCTCACGGCTTTTCGGGCTTCTCTTTCGGGTTGCTCCACCATGGCATGGACAATAACAACGCCGTCTCTGGCTCCAGTGCAGAGCATGCAGGTGGAATGCCTCCTCTGGTCACAGGGGGGGCAATAGCTGGACGGGGCACTCGCTGGCACAAGTGTCGACTGGTTCTGAAGGAGAGAGACAAGGAAGGAGGCGAGAGAGGAGAGGAGTACTTCCTGGAGTTTTACATCCCTCCCAAGgcctccaaacccagactgaCTATCCCATGCTGCGGCATCTTAGACGTCAGGAGCACCACAGCTCTTGAAGTGCCAGACAAAGAAAACACTTTTCTTCTGCAGTTGGAAGGACAGGTTCAGTATGTCATTGAGACCAGAGATGCTGTTCAGATGAGAGCTTGGCTGAGTGACATTAGAAACAGCATCTGTCTGAGAAACATTCACTCTTTGGCAATTGACCTTAGTGAGCAAGAGGATATTGAGGGAGTGTGTGGTGGAGCACAGACGGACCTCAGTAGCACACCAGAATTCAGTGACCGTCTGTCTCAAGTGTGTTACGGTGGGGTGGGTGGTTCTCCACTGCTGGAGCCTCTTCCTCCTGAGTTGCCACCCCGCGCTCCTCTGGATGAACCTGATGGTCGACTGCTTGGCGGAGGCGGAGCTAGTCTTGGCATGCCATTCCCAGAGACGCCCGATGCCACAGGGTCCTTCCTGTTCTCAGAGAGCCCAGCAGCAGAGCCAGTGGAGCACCCATTAAGTGAGTGTCAGTGGTTCCACGGCACCTTGTCACGGCTGAAGGCAGCCCAGCTGGTGCTGGCAGGTGGCATGGCGAGTCATGGCGTCTTCCTTGTGCGCCAGAGTGAAACGCGGCGTGGGGAGTACGTCCTCACCTTCAACTTCCAGGGCAAAGCCAAGCACCTGCGCCTTTCTCTGAACGAGGATGGCCAGTGTCGCGTGCAGCATCTCTGGTTCCAGTCTATATTTGATATGCTGGAGCACTTCCGGGTGCATCCCATCCCCCTGGAGTCTGGGGGCGCCTCAGACGTCACCCTCATCAGCTTTGTGGGTGCCACAGCTGCCCGGCAACCAGGCCGGGACAGGGCAGGCAGCCGGCCCACAGTCTGTGATGTCATCACCACGCGCCACCCTGACTCTCCATCAACCCCCATCTCTGACTGTGTACTTGACCAGCAGACCCCGTAGCCCCCCTCAGCCCCCGCCTCCCCCTCTCCCGCCAGGGCGCCCTCCACCACCCACACCACCGCAGGAGCGTGTAACTGATGTGGAGCCCGTAGGAGGAGGAGCGGCCAGTGGGCCAGAGGAATGTGAGGAGCGCGAAAGGGACACCTCTAAGACAGCTGGAAGGAGCAGAAGccgaagagagagagggaggccGGGCCCGAGCCATTGACAACCAGTACTCCTTCTTCTGAGGAGCAGAAGAGGAGAGCCAGTCACAATCAGTATTTTTCACTTCATAGGAAGAACTCACGTTACTAACACTATTCAAAAGCTTttaaagaatgagagagatatGGAGGGAGATgcgtgcacacatacacacacacacacacacagacacatacacatgttCACTGAAAATACAACATAAAAACACTAAGTAACGGTACACTAAGCGGAGATTGGCTGAGGAAACATTTGTTAATGGtacactacatttatttttcattgtatttcagtattaaatatgTCTCTCATTGTTCTGTTGCATAGGACAGTACGGTCCTTCAGCTTCGTGCAATCACACTGGATGGTACTCAACCACCACGTGGTGCTATCATTTATACACAGACCTTCCAGATTACTTACCCAGCAGCACTCTATCACACATTTTCCTGGTACGTTTGCTTTGTcgtcattttgtgtttgttgttttattattggaTCAGCTGCCACTGATGAACCATGATTGTTGCAGTTTATTTTAGTACTAGACTTCACACAGGACTGCTGCTTGCCAAAATAACCCGAACTTATCTGTGAGTCAGACCAGATATAAAACATCTCCACGGACATCATTACCTCAGTGCCCTCGGGCTGTATGGGTACGACTGCTGATCTGAGACCTTGGAATccttaataattaaatgaatttaaattggctgatcccagatcagcagtctTACAGTGAGACACTTGAGGTGTATGAGCCCTGATGTCTCATCCACTGCTTTGCTGAAGGGTGCTCAGGGTTGGAAGATTATTTTGCAACCAAATCACAGTTTCACATCTGCAACATGCTGATATTCCTACCAGTCACTTACTTTGACAGCTGTGTTTGAGTCATTTCATGGGATCTTGTTCTGTTCGGTTTGGGGAAAAGACTGAAGACAAATTAATTTGGTCACTATTAGACTCGATTGGGAATTAaagatgtgtgtgcatgtcagtTTCCATtgtgaaaataatttattttatacagtgatATGATTGACTGCTGATCAAATTCAAAGCACACGTGAAAAGTGATTTGGTTCAAAAATCCTGAACTTGTCTCTTATGTCAGGAgacaatctctctctttctctctctaaattTCTCATTCTTTGTCAATATCCAGTAGCTGCATTTGATTCAttgtatctatctgtctgtaggATGTCCCCACAGTCTATCATCTCTCTTCTCAGTCTCAGCATTcttacacacacctacacactgtTTTACTTTCGTTTGTTTCAAGGGTTGAGTCCAGAAGAGGGAGAATGTTGTTCATTTACACGAGAAATAGTTTCTTATTGAATATGACAATAAGGAAGACCATGATAATTGATAGTAATAATTGTCTAAATAAtagtattaattttattttttatgttgttttaaaaatgccttTTTTGTCTGTCGTTTACTCTGTATATCCATAATATTGTTCTCCAGACTGAGTTTCACATTTTTGTGCCTTTGTATAGCTCGTGATCTCCCTCACCCTGTCCCACACTAGTTTCTCCTTTGCCTTGTTACAGTTTCCTCATATTTCaagaaagtgtttaaaaaaaaaaaaaaaaaaaaaaaagaccaggaCAAATGGCACATAACTCCCTGTGCCTTCCGGTGTCGTTTTGTCATCATCATTCATTCTGTGCCAGTCAACATTGGTTTTGCCTCCTAGCCATTTCCACCTTACTCCTTCACCCATAGCACCCTCATCTCTTCATCAGATCCCTGTCTCTTTGTAATcaccttcttgttttttttatatctgtgtaTTGCCCTTACACTGATTGCTTTATTCTCTTCCCCTTTCCTTGACTTCTGAACTTCTATTTGTgccttttgtctctctctttctctctctctgtgctgggACCGTGTGTTGAGGTGGACTGTGTTGTCCACTCTGTGTAATTAGTTTCAGGTACTACattgaatttaataataataataataataataataataatacatgacaGTGGTGATATAAATATACTGAAACATG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246445 lncRNA upstream 10207 8982027 ~ 8983311 (+) True G208105
TU246433 lncRNA upstream 35450 8957260 ~ 8958068 (+) False asphd1
TU246318 lncRNA upstream 119226 8851803 ~ 8874292 (+) True G208004
TU246211 lncRNA upstream 188085 8804488 ~ 8805433 (+) True G207932
TU246265 lncRNA upstream 225613 8764526 ~ 8767905 (+) True G207980
TU246490 lncRNA downstream 15330 9022175 ~ 9022947 (+) True G208120
TU246492 lncRNA downstream 20444 9027289 ~ 9027537 (+) True G208122
TU246494 lncRNA downstream 22826 9029671 ~ 9029875 (+) True G208124
TU246495 lncRNA downstream 24548 9031393 ~ 9031921 (+) True G208125
TU246502 lncRNA downstream 34949 9041794 ~ 9044122 (+) True G208132
XM_026916898.2 mRNA upstream 3329 8986572 ~ 8990189 (+) True LOC113528379
XM_026916597.1 mRNA upstream 27238 8962148 ~ 8966280 (+) True cabp5b
XM_026916737.2 mRNA upstream 35418 8950466 ~ 8958100 (+) False asphd1
XM_034310081.1 mRNA downstream 2740 9009585 ~ 9021215 (+) False atxn2l
XM_026916782.2 mRNA downstream 2741 9009586 ~ 9021533 (+) True atxn2l
XM_026916784.2 mRNA downstream 3717 9010562 ~ 9021215 (+) False atxn2l
XM_026916138.2 mRNA downstream 54718 9061563 ~ 9063413 (+) True nupr1b
XM_026916917.2 mRNA downstream 68124 9074969 ~ 9099241 (+) True doc2a
XR_003402909.1 other upstream 90841 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 985251 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1140009 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1693834 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1720987 7272460 ~ 7272531 (+) True trnac-gca_18
TU246534 other downstream 54720 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 937461 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1342557 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1365570 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 1406139 10412984 ~ 10417881 (+) True G208781

Expression Profile