RNA id: XM_026916638.2


Basic Information

Item Value
RNA id XM_026916638.2
length 1989
RNA type mRNA
GC content 0.51
exon number 12
gene id znf207a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18711080 ~ 18720341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAAATGACAGTGAAAAGCGGACTAGTGGCAACTCTATCACTCCgttgttttcttgtttctttctctcctatTCTCACACTCCGCTCCAGTAGGGGGCGATATGGTAGCGCTACAGCTTCAAACTTCCCGTTTAACACTTTCGCACGTTTCCGTCTGCGCCATTTTCTTCTGCCAAATGTTCGGTTCGTGCACCACATCTTGGTGATTCACAAACTAATTGTACACTACTCTACTAAAACATgggaaggaaaaagaagaagcagatGAAGCCATGGTGTTGGTATTGTAATAGGGATTTTGATGACGAAAAGATTCTTATTCAGCACCAGAAAGCCAAACACTTTAAGTGTCACATATGTCATAAAAAGCTATACACTGGTCCGGGCCTGGCCATCCACTGTATGCAGGTTCACAAAGAAACAATTGATGGTGTTCCCAATGCAATACCTGGAAGAACAGACATTGAACTGGAAATTTATGGGATGGAGGGTATTCCAGAGAAAGATATGGAAGAAAGGAGACGGGTACTCGAGCAGAAAACACAGGaaaaccagaaaaagaaacagaaccaAGATGactcagatgaggatgatgatgatgaagaggcaGGACCCTCATTCCAGCAGGCAGCAGCCCAGCCTCCGGCCGCTTACACTCCTATGACACAGCCTGGAATGGCGCCTGTGCCCACACCAGGGATGCCACCTGGGAGCTACTCAGGAATGCCACCAATGATGCCTGCAGTCCCCCCCATGATGCCAGGGATGCCCCCAGTCATGCCAGGAATGCCACCTGGcatgATGCCCATGGGTGGGATGATGCCACCTGGACCAGGAATGCCTCCGATGATGCCAGGCATGCCACCAGGCATGCCCCCTCCTATGGGTCATCGTCCAGGTATGAACCACATGCCACAGGCTCCTGCCTCCACCACGTCAGGCATGATCCCACGAGCAGCCACACCTGCAGCCACAGTGGCTGCTCCACAGCCTGCTGTCACCAAGCCCTTGTTTCCTAGTGCAGGACAGATGGGGACTCGAGCTCCCAGCACAAGCTCAGCCTCTTCCAGTATGGACACTTTGTCAGCACCCTCTAAGCCGCTGTCGCAAGCTCAGCAGGGTGTGCCTGGGGCAGCAGTGGGGCTTTCAGCCTCTTCTTCTGCTGCTCCCAAAGCCACATTCCCAGCCTACAGTCAGCCTGCGCCCTCTGCTGCCAGTGCAGGCAGCACTGTGGCCAAACCTGCCACCCCCATTACAAGTAAGCCTGCCACCCTCACCACTACCAGTGCAACCAGTAAGTTGATCCACCCTGATGAGGATATCTCTCTGgaagaGCTGCGTGCTCAACTACCACGCTACCAGTGTAAGATCCCTAGCACAGGGCAGACGCACATCAGCACTCCTCCTGTTGGGCCAATGGGAGGGGTGATACCTGCTCAGCAGGGTGCTTCTTCACAGCAGCCAGGAGCCAGGCATCCCATGCATGGGCCATATGGTACCCCATCCCAGGCAGTGCCTGGCTATGTGCCAGGGGCAATGTCACCTTACGGGCAAGGCCCCCCAATGGTTCCTCCTTACCAGGGAGCTCCTCCAAGGCCACCCATGGCCATGAGGCCTCCTGTAATGTCCCAGGGAGGCCGTTATTGAAGCTCAAACACCAGTCTCCGATAGGTTTGGTTTTTAGAAGTGAAGTTTAGTAAATATGGTTCGTAATAATTTGAAGCGGCTGGAGTAACGTGAACAGTACTGCACCTTTTATCAAGGCAAGTCTTTGTAaacatactactgtactaaacaaaTTAAGCCTTCACAGCACCTTTAGGTGCTGTTGGACTTCATGTCCCCAGCTTTGCTTGGTGAGGGCTTCAGTTAGCTATAACTGTTTTTGTATGCCTGATTATCCTTACTTACATAAGTAATAGCTGATGTGAAAAGtgtctgtattattattattatgcaaacTGTAATAAACGGTGTTGAAAACTTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579422.1 lncRNA downstream 333825 18375684 ~ 18377255 (-) True LOC117598999
XR_004579431.1 lncRNA downstream 634693 18070785 ~ 18076387 (-) True LOC117599003
TU252323 lncRNA downstream 656865 18050735 ~ 18054215 (-) False mettl23
TU252320 lncRNA downstream 656865 18050833 ~ 18054215 (-) True mettl23
TU252315 lncRNA downstream 667801 18041404 ~ 18043279 (-) True G213028
TU252732 lncRNA upstream 72101 18792435 ~ 18849147 (-) True G213407
TU252741 lncRNA upstream 103137 18823471 ~ 18827432 (-) True si:dkey-204f11.64
TU252898 lncRNA upstream 303424 19023758 ~ 19031157 (-) True G213549
TU252899 lncRNA upstream 304738 19025072 ~ 19072985 (-) False G213549
TU253100 lncRNA upstream 696850 19417184 ~ 19422415 (-) True G213716
XM_034310203.1 mRNA downstream 133703 18576604 ~ 18577377 (-) True LOC117598995
XM_034310201.1 mRNA downstream 316102 18389882 ~ 18394978 (-) True LOC117598994
XM_026916697.2 mRNA downstream 549201 18101441 ~ 18161879 (-) True LOC113528252
XM_026916913.1 mRNA downstream 656918 18050803 ~ 18054162 (-) False mettl23
XM_026915999.2 mRNA upstream 15319 18735653 ~ 18756676 (-) True slc25a23b
XM_026916191.2 mRNA upstream 69847 18790181 ~ 18792959 (-) True timm29
XM_026917228.2 mRNA upstream 81697 18802031 ~ 18818307 (-) True carm1
XM_026917230.2 mRNA upstream 83145 18803479 ~ 18818309 (-) False carm1
XM_026916137.2 mRNA upstream 103558 18823892 ~ 18827734 (-) False si:dkey-204f11.64
TU252457 other downstream 333717 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 857441 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 1035796 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 1285179 17386211 ~ 17425901 (-) True G212700
XR_004579436.1 other downstream 1391361 17292851 ~ 17319719 (-) True LOC113528519
trnat-cgu_6 other upstream 355935 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 724655 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 1320089 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 1692515 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 2294105 21014439 ~ 21027259 (-) True fgf2

Expression Profile