RNA id: XM_034310241.1


Basic Information

Item Value
RNA id XM_034310241.1
length 6880
RNA type mRNA
GC content 0.43
exon number 13
gene id nfixb
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13517596 ~ 13660239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctaTTTTTGGCGGGAAAGCGAGTGAATGACGGCAAACAGACAGGCTGACCCAGGGCTCAGGTGGCAGCTGTGCTACGACTTCTCTGCCAGGTCATGGCTGATGgcTACCGAAACGTTTCTGGTGAATGAAGACCCGTCCAGAGGTCCTGGGATGCCGGAATGCTTTGTTGTGTCTGATTCCTACCGGGATGAGTTCCATCCGTTTATCGaggcgctgctgccacatgtgCGTGCCTTCTCCTACACCTGGTTCAACCTGCAGGCGCGCAAGCGCAAGTACTTCAAGAAGCACGAGAAGCGCATGTCGAAGGATGAGGAGAGGGCAGTGAAGGATGAGCTGCTGGGCGAGAAACCCGAAATCAAGCAGAAGTGGGCGTCGCGTCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGTGAGGACTTTGTGCTCACCGTAACGGGCAAGAAGCCTCCATGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAAATCCGCCGCATCGACTGCCTCCGTCAGGCCGATAAGGTGTGGAGGCTCGACCTGGTCATGGTCATCCTGTTTAAAGGCAGCCCGCTGGAGAGCACGGACGGCGAGAGGCTCGTCAAATCGCCCCAGTGCACCAACCATGGCCTGTGTGTCCAACCACATCACATCGGAGTCTCCGTTAAAGAGCTCGACCTCTACCTGGCCTACTTCGTCCACTCGCCAGAATCTGGACAATCAGAGAACTCTAACCAGCAAGGAGAAGCAGACGTCAAGCCGCCACCCAATGGGCACTTGAGTTTCCAGGACTGCTTTGTGACTTCAGGAGTGTGGAACGTGGCCGAGCTGGTCCGCGTGTCACAGACTCCGGTTGCCACGGCTACCGGTCCCAACTTCTCCCTGGCCGACCTGGACAGTCCTGGATATTACAACATCAACCTGGGTCGCCGGTCCATCACGTCCACCCCATcgaccagGACTGAAATGGAGCTGTATGGCAGTCTCCCTCGGAGCTCAAACAAGCGTAAGTCCATTGATGACAGTGAAATGGAGAGCCCAGTGGATGATGTGTTCTACTCGGGCCGTTCCCCTGCGCCCGGCAGCTCACAGCCCAGTGGCTGGCCTAACGATGTGGAtgcagGACTCTCGTCGCCTGGTTCTCTTAAGAAGCCGGGGAAATTCGATTTCAGCGCTCTGTCTGGCCAGACGAGGTCTGCCCGCATGCCGTTCACCCACCACCCACTGCCCATGCTGGCAGGAGTGAGACCAGgGAGCCCCCGTGCCTCAGCCTCATCTCTGCACTTTCcctctccctccatcatccAGCAGTCGAGCCCTTACTTCACTCACCCCACCATCCGCTACCATCACCACCCGGGGCAGGACCCACTCAAAGagtttgtgcagtttgtgtGTGCTGATGGACCAGGCCAAGCTGGAGGTCAGCCGAACGGGAGCGGCCAGAGCAAAATGCCCGGCTCCTTCTTGCTGCCTCCGCCACCCCCTGTGGCGCGTCCAGTGCCCCTCCCCATGTCCGACTCTAAACCCAGCAGCATGCCCCTTGATGGCGGACTCACCTCGCCCGCATCTCCGTcATACTCCACGCCAGGCTCCACAACTCCCAACAGGTTTGTCAGCATCGGATCACGGGACAACAACTTTCTAAATATCCCCCAGCAGACACAAtCTTGGTTCCTCTGACAAAACCTGCCTGCCAACAAGCAATTAAAATCCCGTCACTACAATCTGGAATCTTGAAtctggaaacaaaaaaaaatcccacctAAAATTGCCCTCTCACCCTGTTGGCCCAATAGAACAACAAAGGAAACCAGCAAATCTTCTTATCATTTGGAATCTTCTGAGCTTGTCGACTTACGGCAATGACCCCCTCCCCCTTTTTTAATAAGAGGATCACGTGACATTTTGAAGGAGGACATGGAGTCTCTCAAAAACCACAgaaatgacaacaacaaaaagcagaaacacaaaagaacaacccgaagaggaaaaaaaaaagaatctgttaCTTATATTGTGCAATGGCTTGGGACATCAACAATGGTgaggttttaattaaaaaaaaaaagcaagcataGTTTTAGGAACTATTGGGACATCAAATAATTGAGATGTTATGCGTCCTCTAGCATGGAGTTGGAGCTAAAGCCAGCTAATCGTTCCTTCTGACACCATTTGTAGTTCAGTGTAGAAATTGGTCTCGATGTGCCCATTCCTTTAACAGCCAGCTTAACAACAATTACtaatcaaaaacacaatcaaGCAAAATAAAACCTAAAGTATTGCACTAGAAAAAGGAAAGTAcggaaaataaaacactactcTCATGTCCGCTATTGAAAATAGgatagacagagaaaaaaaaatgtttgcacacAATCTTTTGAGGTAAACATGAAAGTGGACATCACACACTAAAGTTAATGTTGGATGTAAGTCAACAGTCATAGAGGACAGTCTCTCATTTTAGGCTGATGTAGGAAAACATGCTACGATCTAGACAAAAACTACCTATGGAGTCTGTCCAATCAAAAAGAATCAAATTCAGGCCTTAAACTCGCCCTTAGTGCCAGTTGAATGCTGACTGTAATCCCTTTGGGTAATGCCAACcctaacacacatatacatacacacactcacactcacacacacacacacacacttaaattcACTGCCATGTCTCTGAGCTGCTGCTTAGAaatgatcacattttttaaaagggagttaattattatatttctttccTGCTTTACATTCCAAATCAGAAACCATTACAATGCCTTACCATCTCTAGAGACATTCTAGGACATCAATTTATATTAAAGTTTATTAAGTTGTTGTTAGGTGTATTGAAGATCGCATGGGGTCCcacaaaagaaaagcattcGTACCATCATcaggagttcaaatcccaacgaTGCCaaagccatccatggccaggagtccaagagagcaaaattggctgtgttcTCTGGTTAGGAGAGATGGTGTGACTCTCTCCACTGTCAGAGTGACACTAACCAGTCAAGGTTGtgtctgtgaactcatgtatgcagaagaaagcagttagcactttcctccgtgtgtgttcagctgccctgtggcgtagcatgagcagcatttCAAGATAGGTATGGtagcttcatgtgtcttggaggaagcatgtgatatgAAGCCTTTACCCACTAAAACTAGCTAGtggatgggaattggcaaatgatgaaatggggggaaaatggggtaaaaatcCCCCTCCCCCAAACCCAccttctccaaaaaaaaaaaaagcaaaattccACAATTCCTGAACATTAGAGTTTCATTTCTATACAGAATTTGTGACTGGAACTAGGGGTCACAACATCTATATTCTTTCATTAGAGAGTCTAGAGAGTCCACAGGTTGGACTGACATTGTAAGCAGCATTGTCACATCAACTCACCACTAACCGCTTGAAACAAAACTttctaataatttttaaaatgaaatggaaatttcATTGTGACATGCTATTCAAAAGAAACTGGTGTACATTAGAGTGTATCCAGAAAAGTAAAGTAGATTGCAGCATTCAAGATTCTGAAGTTTGTGACCAGAGAAGTGTACAAAACATAGACACTTTGTCAGTGGGTGGAGTGCCAGATGCTTTAAATGTGTCGAACACCTGGTTCCTATCACTGCCATTATGAACAATTTATGATTTGGTAATTATGTACAATTACATGTTTCTCAAGAATGATGAGTTTTTCATCAAAACCACTGGAAAGTCTCAGTGGACATCCACTTTAATGGCTTGTAGAGACGCCCCATCCTCTCTGTACTGTTTACTCTCCCAGACGGCTGTGTTCCAAGAACACAAGGCCACGCTGTGGAGCAAAAGAGTGTTGTAGTTGTGCTTACAAGGAGAGGGGTATGTAATGGCCATTTAGATCAGACATTGCTTCATCTGCTATGTTTACATCCTGTTTAGTGATTCACAACGTTTATTAAAGGCAGAACGCTCAGAGCATGGCCTCagactctctctcacacacacacacatacacacacagacacacacacacaactgcacacaACACCTTCCACTGACTGATTTAAAGGGAAGCCTTGGTTTAACTTAGGGCAATCCTAATCTGCCTTTACATAGTCATGCTGAAATTGTCATAAATCAGCTTGTTTTAAACATCAATTTAATTTTTAGCCGCATTATTCGAATCACTGAGCTCACAAAATAACTGGACTGCCTGATTCTGTGTCTCACTGCAGGGAAGCGTGGTTGCCGAAAGGCGGCCATGTCATCAGCGTAGTAGAGGACTAGCATTGCTAAATGAGAATTAATGATGGCGATGGACTTTTCTTTTCTAATCAATGGAAGTGCCTCTGTATTCCCATTATGCAATTTGTTAAACATGAATTCAGGTTATTTTCTCACATATAAGCTATAGAGGAAGAAATTTTTATGTCTGGAGTAAAACAAGTGGCAAGTGACAGCTCACTAATTACAGACATCTTTATATATACAGGAGATatccatatatatttatataaacatttttttgtttgcgtAATAAGCTCAGTGGCAGTCTAGTTATTTTCTGAAGTATGGCAGCATTACGATTAATAAATGAGTTATTTTTCAGTAGTACCAGTCTCAAAACCCAGTTATACACTCAGCATAGGAAAAGCCCAACAAGCAAAGTCcctggaaaattaaaaaaacaaaaactaaatagAAAGTGTATTTCTATAGTAAACAGTATCAGTAGTGTTGAGGAGAAAGATGTGGCTTTTGAGTTcttttgtgtttggatgggaAGTATTTGtaattgaaaaataatgtaTGTTGATTGAGCCATGTGCAATGCCTTGGGTAGAGAAATGTGTTCGTCTGTTAGATTGTTAGAGGGTGTGATagaagagggggaaaaaatacccTTCTGTTATTGTTTCAAGTCCAAAAGGTCCGGGACTCTAAACTACAGGgcggagagaaaaaaaaagtctttgtaAGTTTTGGgagttttttaatctttctttcttttttttaatagcctttttttccttttttaatgtttatttgtaaTGATTTGTTCTCAAAACTTGGGAGGGCTGAAGAAACAGTTTTGCAACacatcaaaaaaatatatatatcactaaATGAAACTGGTGCTTTTTATGGAATACAGTACATTCAAACTCTATtatacataaagaaaaaaaacaagtaagtGTTATCATAACGCAAAAATTTTAGGAAAAACATGCATACTCTATTTCTTGTTTAGAATTTAGTAAAGGGGGAGGGGTTCATTTTAGTCAAAAAGGCATTTTTCTCCCAACGGAGGGTTTAGTCACAGAGCGTGGATAAAATCCAAAGCGTTGACAATTACACGCAAAGTCCTGAGAAGGAAAATCTAAAAAAAGGAATTATTGTTTACAATGTAAAGTTGAGACAGAAGAAATTGCACTATGTATTTGGCAgccataattacacacattactaaCCATGACAATACATAGTCAATTCTGTTGAAGACATTATCCTACAAGAAGCTAGTGCATTGTTGGCTTTTGTACATAGAGAATTAAAACAGATCCAAACTGAAGGACAAGATCTTCCCTTTTCTTGGGAGTTGCTTCTAATCAACTTGATCGCCCTTGAAAATTGTCAGTACAGCAGAAATGAGACCTTTTCATCGGTagctgttgtttattattagactccCATCCTATTATAAATACTTGTGTAAGCCAAtctgaaaattattttaataaatagagCTGAAAATGTTACAAAGTGAACCCCACCCCCTCTCCTAAACCAACACCCCCTCCCGGTCCCAATGTAAATTACTCTAAACtctaaatatttgttttgtgatGTAGTGTTAGACTCAGAGCATCTTCAAGGTTGTCCCTAAAAAAGTGCCTTTGTTCACAGACTCCATCTTGTAATCCTCAGTGCCCGTTTCAGAAAACCCCCCTTTCAACCCGCTTCTATATTCTCTCCTTCTTCAAGCTCTTCAAAGCAGTATATATAGTACTAAAGGAAATCGGTGTGACTTAGTTCCTCTTTTTATTGTTGATGctaaaattgagaaaaaaaaaaaaaaaaagtccttccTGTCTTGCTTTTCCTTCCTCTGTACTCCTTTCCTTGTCTTCTGCCTCTCTTGGACACTGGAATAGTCTGTAGTCGCATAACCATCTTCTTTCCCGCCCTTCCCCATTTTCATTGAATGGAGgggtttttaaaagaaaaaaaaaagcaaaaacttttTGTCTGAGCAGAATGCAGTTAGCTTACATGTTATTCTTGTCTGTATGCTTCACATTGTATACCATACCGATCTCTTCAGCTTCTCCATTGAACAGTTAATGTAAGTGAACAAGTTACACCAGTGGGCTCTGGCGGGATGTCAATCAAAGGGTGTATGAAGGGGAAAAGGTTCCACCATGGAGCAGTTAATCATATTTTAGTGAAGGAAGAAATTGGTTGATGTAGGAAGTCCTTCTAAAAGGTggtaggaaggaaggaatttAGGCTGCTGGGTTACAATAGGTTTGTGATTTGTTTtgactgtatttatttgtattttttttaccaaaatttattttttatctttttttgtcAATATTGCGTATTTAGGTGGCATTTAGGTGGCACCAATGCCACGCTGAGAATTTTTATAGATGATGCACCTTTGCAGTGGTTATACGAGACCAGCTATTTAAACACTTGGAAGAAAAATGACCTGAAATTACTAAGCACCTTATTACGGAATGGGTTCAGCAATGGATGAGAGACAGAttcagagatttaaaaaaaaaaaaaaaaagattaaaccgAAATTCCAGTTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249558 lncRNA upstream 57106 13459979 ~ 13460490 (+) True G210655
TU249525 lncRNA upstream 72369 13444748 ~ 13445227 (+) False znf653
TU249423 lncRNA upstream 151703 13365684 ~ 13365893 (+) True G210532
TU249234 lncRNA upstream 471763 13044990 ~ 13045833 (+) True G210384
TU249018 lncRNA upstream 696312 12821076 ~ 12821284 (+) True G210209
TU249616 lncRNA downstream 1935 13662174 ~ 13663501 (+) True G210698
TU249611 lncRNA downstream 5277 13665516 ~ 13669551 (+) True G210694
TU249641 lncRNA downstream 35251 13695490 ~ 13695799 (+) True G210719
TU249647 lncRNA downstream 83210 13743449 ~ 13744528 (+) True G210725
TU249617 lncRNA downstream 182734 13842973 ~ 13844571 (+) True G210699
XM_034310080.1 mRNA upstream 23654 13464085 ~ 13493942 (+) False zgc:158403
XM_026916842.2 mRNA upstream 23654 13475429 ~ 13493942 (+) True zgc:158403
XM_026916841.2 mRNA upstream 23654 13475828 ~ 13493942 (+) False zgc:158403
XM_026916251.2 mRNA upstream 58866 13448249 ~ 13458730 (+) True tspan35
XM_026916100.2 mRNA upstream 71910 13435381 ~ 13445686 (+) True znf653
XM_026917215.2 mRNA downstream 42445 13702684 ~ 13713883 (+) False fbxw9
XM_026917214.2 mRNA downstream 42475 13702714 ~ 13713884 (+) False fbxw9
XM_034309974.1 mRNA downstream 42612 13702851 ~ 13713884 (+) True fbxw9
XM_026916945.2 mRNA downstream 60995 13721234 ~ 13734216 (+) True dhps
XM_034309807.1 mRNA downstream 216921 13877160 ~ 13889327 (+) False si:ch73-364h19.1
XR_004579399.1 other upstream 24746 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 1329007 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1939773 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1980431 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 3099715 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 2153003 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2257978 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 2480091 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 3427052 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 4523780 18184019 ~ 18341937 (+) True LOC113528485