RNA id: XM_026916675.2


Basic Information

Item Value
RNA id XM_026916675.2
length 4123
RNA type mRNA
GC content 0.46
exon number 15
gene id cacnb1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7227341 ~ 7259863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACCTCCTAACGACGGCAGGCTCGAGCTCAGTGAGCGTACTGACAGCGCGCGCAGAGCAGCGATCCGGTCGCTATAGCTACCTAAGGCGGTGGAAACGGTTAAACCTGAAACAAACATGTTTTgacaatgaagaaaaacagaagacaagGCAGCGCAGTGTAAAGGAAAGAGTAGACACCGTTCTTGAAGCTAAAATCAATGGTACAGAAAGGGATGTCCAGGACGCCTTCCACCTCGACACAGGAAATCCAGATGGACATGTTCGAGCACCACGGCTCGCACGCGCAGGGGAAATACGCAAAGAGGAAGAGTCGCTTTAAGCGATCTGATGGCAGCACCTCGTCTGACACAACCTCAAACAGCTTTGTCCGGCAGGGTTCAGCAGACTCCTACACCAGTCGTCCCTCAGACTCTGACGTGTCTCTGGAGGAGGATCCAGAGGCCCTGAGaaaagaggcagacagacaggctcTGGCAACCCTTGAGAAAGCcaagACTAAGCCAGTTGCATTTGCTGTGAGGACTAATGTTGGTTATAACCCGGGTCCTAATGATGATGTTCCAGTGCAGGGCATGGCCATCTCATTTGAAGCCAAAGATTTCCTGCATATCAAAGAGaaatataataataactggTGGATAGGACGTTTGGTGAAGGAAGGATGTGAGGTGGGTTTCATCCCCAGTCCAGTAAAGCTGGAGAGCACTCGTCAGCTACAGGAGCAGAGGAGCAGACAGAATCGCTTAAGCTCCAGTAAGTCTGGTGGGAGCTCCAGTCTGGATGTTGCCTCAGGAACTCGTAGGCCCACTCCACCTGGAACAGCTGATATGTCAGCACTTTATGATGATACATCGGATGTTGAGGAGGCGGAGCATGTTGATGCCCGGGACCGTAAGGGTGTGGCCAGCAGTGTCACATCCCCTCAGGGCAATATACCTCGTCTGCCCTTCTTTAAGAAGATGGAACATGTTCCTCCCTATGATGTGGTGCCTTCTATGAGACCCATCATTCTAGTCGGGCCATCACTCAAAGGCTATGAGGTAACTGATATGATGCAGAAAGCTCTGTTTGACTTCCTGAAACACAAGTTTGAGGGCAGAATATCCATCACGCGGGTCACAGCAGATATCTCCCTCGCCAAGCGTTCTGTCCTGAACAATCCCAGCAAACACACCATCATTGAGCGTTCCAGCACCAGATCCAGTTTGGACGTACTGGCCGAGGTACAGAGTGAAATAGAGAGAATCTTTGAGTTGGCTCGGACCTTGCAGCTGGTGGCTCTGGATGCTGATACCATTAACCATCCATCTCAACTTGCCAAAACATCACTAGCACCTATAATAGTTTACATTAAGATTGCCTCTCCAAAGGTATTGCAAAGGCTGATAAAGTCCAGAGGTAAATCTCAGGCCAAACATCTCAATGTTCAGATTGTGGCAGCGGACAAACTAGCACAATGCCCCCCGGAGCTCTTTGACATCATATTAGACGAAAACCAGCTGGAGGACGCATGTGAACACCTGGCAGATTATTTGGAGGCGTACTGGAAGGCCACACACCCTCCAAGCAGCAACCCCCCAAACCCACTGCTGAACCGCACTATGGCCACGGCAGCACTTGCTGCTTCACCTGAGCCCGTCTCCAACCTGCAGGGGCCATTTCTTGTGCACAGTGAGCCAAAGAGGGAGGGGTCTGTCATGGAACGGGCCTGCCCCCAGGACTATCAGACCGAGCTGGGCGGCAAGAAGCCACTGCGCACTTCACGCAGTCAGTTACAAGCCGGGGGGCGTGGCTTATCACGACAGGACACATTTGATTCGGAGACACAGGGCAGTCGCGACTCGGCCTACACAGATGACATGGAAACAGATCCATACGAGGAGCCAGAATCCTGTCGCAGCCGGTTAAACCCTGCCCACCACACCCCACGACAGGCATCCTGGGAGGATGAGGGGGCAGAACCAGATCAGGAGAACCTCAACCTAGCACCGccaatgaccaatcagcatCACCGTGGGCGGGCCCACCTGAGGGAGCGCTACTGTCAAGATGTAGAGGCCGGTGAGACCACGGTAGGCCACAACCAAAACCAGGAGGAGTGGAACAGAGACGTGTACATCCGCTAAAGCCAACAACCTAGAGAGGAGGACAGGGAAGATATGGAGAGTACATGAAGGATTTAGGGGGATTAAAAATTTAGGGGGACAATTGTTGATGTCTAAAGCTGGATCTGTTTACAATccatagaaaccatcacaggcAAATGCTGTACAGTTCATATTTCCATCATGCGCATTATGCCAACCAAGCTTACACTCATATTTCATTTAGCTAATCTTATTTCAGGGTGAGGGGGAAGCAAAGACATGTTTGTTTCCATTTTatctttgtttccttttttgtttgtgttgtcttgCATGAGCCCTTATCAGTATAAGGATAATTCCTATTTCCAATAGCAATGAAGTAAAACTAAGAAAATATATAACCACAaacttgtgtgtatgtatgtgtggatgtgagagcgagtgtgtgcatgggtgtATGTATTTTGTCCTCTTACTGTCTTAATCAGGGCCTCTTTATCCCCAGTTAGAATATACTGGGCCTCAAATCTCTTTAGTTCCTTAGACTGGATTTTACTGTGGAACTGAATGatctaaattaaacattaaaagggCCTTGTTACACAGTCAACCTTCGGATATACCATGTCAGTGGTGCACTGGATTCACGTAATGTATCACCAGGTAATGGAGGCCAGAATTTTCCAGGTCAAATTTCTCTACAAAGATCTGCCAATATTCTTCATGTATATACTTTCTCTATTTCTTTAGATACTATTTATTATGCTTAGAATGCTAGAAACTGTATTACATCATTTGCCTGATATAGCTTTATTGCTGCTACGTGTTTTTCCAGCCTGTACAGTAATCTGTTCTAAAACTCACATTTGTGGTATGAACAGTTTCAGTAAGGTGGCTGACACATTAATAAAGCCGACCAATGTTAACTTATTTGTGATAACAGGTTTTATTATGCAAGAAAACGAAACTTTAAAGCCGCTTTATTACACGTGATGTGATTTTTCCCCACCGTCAAATGAGTATGAcctttaaacaatttaaaacaaaggTATAAAACAGGTTCTCTGCTCCAGGCCTGGAGGCTTACTGCCCAACACAATTTCATGTTTCCCTGCTTGCAACACACCAGATCAGGTGTTGTAGGCAGTAGGGTAACATTGCAGAGCAGTGGGCCTCCATGACATGAGTAGGGAATCCATTGTCTGAAGCACTTTGTGACCTCCATAAATGGCTACTACTGGGGACTGTGACAGAGATTTTTTATGTGGCATCGTCTCCTGTGTTCATCAAAATTTTTCTGATGCACTACTGCTGTGGGAGTGAAACATGTCTCATATACATGCCGATCACATAACAAATGACAAGTGCCAGGATATTTCATGAAGTTACACCCACTACCCGTGGTGGGTCGTCTTAACTCTGTGCCAcacatgtttttgttgtgtGGATGTGCTATAGAAGTGTCACCCTTACTCTTTGTCTACCAgttatttttgtcattgtaaGGATCTGATTGTGTGATCACACTGattttacaaagaaatacacagacaacaacatacacacacaggtataaacacacagtaaaccTTCTACTGCCTTTTTCTCCTGCTCCTGTCTTTTGTGCCACTATCTCTGTGGGCATTTTTAAACAAgggttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtatgcgtgtgtctgtgtatatgtgtgtgtagggggggCGGACACTCAAACAGCTTTTGATGTGCAGGAAGAGTGTCAGTGAATATCTTTGATGAGCCTGTTTTTACTCACATATGTTGCAAAAGGACATCATGCTAATGATGAAATTCAGAAATGTACAAGAATATAGCTTAATAATGAATGTTATTGTTGCGTTATTGCAATTGTTAATatatgacaaaacaaaaacatgtaatcTTTGGTGCCTGATTGTAGCtccattttgcttttttgccttctgtttttaatctgtgggtaaatctgtattttaattaaaaattaaaatcagaa

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0070978 voltage-gated calcium channel complex assembly biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04862 CACNB1; voltage-dependent calcium channel beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245151 lncRNA upstream 168524 7054386 ~ 7058819 (+) True G207025
TU245054 lncRNA upstream 225175 6930320 ~ 7002168 (+) True G206955
TU245037 lncRNA upstream 295957 6898842 ~ 6931386 (+) False G206942
TU245030 lncRNA upstream 327411 6898842 ~ 6899932 (+) True G206942
TU245223 lncRNA downstream 34622 7294485 ~ 7296973 (+) True G207084
TU245258 lncRNA downstream 58164 7318027 ~ 7318360 (+) True G207111
TU245255 lncRNA downstream 59275 7319138 ~ 7321930 (+) False spsb3a
TU245299 lncRNA downstream 126153 7386016 ~ 7388543 (+) True G207140
TU245320 lncRNA downstream 180214 7440077 ~ 7440281 (+) True G207155
XM_026916246.2 mRNA upstream 12408 7203627 ~ 7214935 (+) True LOC113528018
XM_026916249.2 mRNA upstream 12408 7203627 ~ 7214935 (+) False LOC113528018
XM_026916247.2 mRNA upstream 12408 7204401 ~ 7214935 (+) False LOC113528018
XM_026916144.2 mRNA upstream 33443 7178717 ~ 7193900 (+) True LOC113527945
XM_026916982.2 mRNA upstream 52722 7166204 ~ 7174621 (+) True LOC113528443
XM_026916027.2 mRNA downstream 3283 7263146 ~ 7267913 (+) True arl5c
XM_034310102.1 mRNA downstream 15041 7274904 ~ 7290380 (+) True lasp1
XM_026916935.2 mRNA downstream 42560 7302423 ~ 7305900 (+) True atp6v0ca
XM_026916977.2 mRNA downstream 49344 7309207 ~ 7321965 (+) True spsb3a
XM_026916980.2 mRNA downstream 49344 7309207 ~ 7321965 (+) False spsb3a
XR_004579327.1 other upstream 111408 7108178 ~ 7115935 (+) False LOC113528597
XR_003402939.2 other upstream 130664 7084441 ~ 7096679 (+) False eftud2
TU244415 other upstream 966486 6254468 ~ 6260857 (+) False LOC117598831
TU244376 other upstream 1032379 6190165 ~ 6194964 (+) True ypel3
XR_004579365.1 other upstream 1051977 6160334 ~ 6175366 (+) False mapk3
trnac-gca_18 other downstream 12597 7272460 ~ 7272531 (+) True trnac-gca_18
trnac-gca_21 other downstream 39750 7299613 ~ 7299684 (+) True trnac-gca_21
TU245701 other downstream 593328 7853191 ~ 7853509 (+) True G207480
trnas-cga_1 other downstream 748323 8008186 ~ 8008267 (+) False trnas-cga_1
XR_003402909.1 other downstream 1636755 8896618 ~ 8902677 (+) True LOC113528069

Expression Profile