RNA id: XM_026916695.2


Basic Information

Item Value
RNA id XM_026916695.2
length 5765
RNA type mRNA
GC content 0.45
exon number 25
gene id tnpo2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12015201 ~ 12032758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTAGAAGGCTATAAGCGCTTCCGGCTCGGGGGCTTTGTGAGCGCGGCGTGTTTAGACTGCGGCGCTGTGCGGCTTCATTCGCTCTCACACTGTTGCATGCATCCCTTTCGGCTCAACAGGCCTCCGCATACAGTGTCTgaTGGAGTGGCAGCCGGATGAACAGGGACTCCAGCAGGTCCTTCAGCTCCTGAAAGACTCCCAGTCCCCAAACACGGCCACACAGAGAGCTGTGCAGCAAAAACTAGAGCAGCTGAACCAGTTTCCAGACTTCAACAACTATCTCATCTTTGTCTTGACACGACTGAAATCTGAGGATGAGCCGACACGTTCACTCAGCGGTCTGATTCTGAAGAACAATGTAAAGGCTCACTACCAGAACTTTCCTCCAGCAGTGGCAGACTTCATCAAGCAGGAATGTCTGAGCAACATTGGGGACCCATCTCCCCTCATTCGTGCTACAATTGGTATCCTGATCACAACCATCGCCTCTAAAGGGGAGCTGCAGACGTGGCCCGAGCTGCTGCCTCAGCTCTGCAACCTGCTCAACTCGGAAGATTACAACACCTGTGAGGGATCATTTGGTGCCCTGCAGAAGATATGTGAAGACTCATCCGAGCTGCTGGACAGTGATGCATTGAACCGACCTCTAAACATCATGATCCCTAAATTCCTGCAGTTCTTTAAGCACTGTAGTCCCAAGATTAGATCTCATGCTATTGCTTGTGTGAACCAGTTTATCATTGGTCGAGCTCAAGCCCTGATGGACAATATCGATACCTTTATTGAGAGTCTGTTTGCGCTGGCTGCAGATGAAGACTCTGAGGTGAGGAAGAACGTTTGTCGAGCACTGGTCATGCTGCTTGAGGTCCGAATTGACCGCCTTATCCCACACATGCACAGCATTGTTCAGTACATGCTACAGCGCACACAGGACCCAGATGAGAATGTGGCTCTGGAGGCTTGTGAGTTTTGGCTCACTCTGGCTGAGCAGCCCATCTGTAAAGAAGTTCTGTCTGGACATCTGGTTCAACTGATTCCTATCCTGGTAAATGGAATGAAGTACTCTGAAATCGACATAATCTTGCTGAAGGGTGATGTGGAGGAGGATGAGGCTATTCCGGACAGTGAGCAAGACATTAAACCACGTTTCCACAAGTCTCGCACAGTCACACTGCAGCACGAGGGAGGCGAGGGAGAGGAGGGGGAGGACATTGacgaagatgatgatgatgatgatgacacgCTGTCTGACTGGAATCTACGAAAATGCTCAGCTGCAGCACTGGATGTGTTGGCAAATGTGTTCCGGGACGAATTGCTACCCCACCTACTCCCTCTGCTGAAGGACTTGCTGTTTCACCCAGACTGGGTGATCAAGGAGTCTGGCATCCTGGTCCTGGGAGCCATCGCTGAGGGGTGTGTGCAGGGAATGGTTCCCTACCTGCCAGAGTTGATTCCTCACCTAATTCAGTGTCTGTGTGATAAGAAAGCTCTGGTGCGCTCCATCGCCTGCTGGACGCTGAGCCGCTACGCTCACTGGGTGGTGAGCCAGCCGCCTGACGCCTACCTCAAACCGCTCATGACAGAGCTGCTCAAACGCATTCTTGATGGCAATAAGAGGGTGCAAGAGGCTGCCTGCAGTGCGTTTGCAACTCTGGAGGAGGAGGCTTGCACAGAGCTTGTTCCTTATCTTGGCTTTATTCTGGACACACTAGTCTTTGCTTTCGGGAAATACCAGCACAAAAACCTGCTCATCTTGTATGATGCCATTGGGACATTGGCTGACTCTGTGGGCCATCATCTCAACCAGCCTGAATATATCCAGAAGCTGATGCCTCCTCTCATCCAGAAATGGAATGAGCTGAAGGATGAGGACAAGGATCTGTTCCCTTTGTTAGAGTGTCTCTCATCAGTGGCCACGGCTCTGCAGAGTGGCTTCCTGCCCTACTGTGAACCAGTGTATCAGCGCTGTGTCACTCTGGTGCAGAAAACCCTCGCTCAGGCAATGATGTATAACCAGCACCCAGAGCAGTACGAGGCTCCTGATAAGGATTTCATGATCGTGGCTCTGGATCTCCTGAGCGGCCTGGCTGAGGGACTCGGAGGCCACGTTGAGAGACTGGTGGCTCGCAGCAACATCATGACCCTCCTCTTCCAGTGCATGCAGGACACTATGCCGGAGGTGAGGCAGAGCTCATTTGCTCTGTTGGGAGACCTGACCAAGGCCTGCTTCCTTCATGTCAAACCCTGCATCTCTGAGTTCATGCCTATTCTGGGGCTAAACCTGAACCCAGAGTTCATTTCTGTGTGTAATAACGCCACCTGGGCCATCGGCGAGATCTCCATACAGATGGGTGCAGAGATGGAGCCATATGTGGGGTTGGTGCTTAACAACCTGGTGGAGATTATAAATAGACCCAATACCCCCAAGACTCTGCTAGAGAACACAGCTATTACGATTGGCCGACTGGGATACGTTTGTCCTCAAGAGGTGGCACCCATGCTGCCTCAGTTCATACGGCCTTGGTGTCAATCGCTCAGAAACATCAGGGACAATGAGGAGAAAGATTCAGCCTTCAGAGGCATCTGTTTAATGATTGGGGTAAACCCTGGAGGTGTGGTGCAGGACTTCATTTTCTTCTGCGATGCTGTGGCGTCTTGGGTGAACCCAAAAGAAGACCTGAGAGACATGTTCTACAAGATCTTGCATGGCTTTAAGGACCAGGTTGGAGAGGAGAACTGGCAGCAGTTCTGTGAGCAGTTCCCCCCACAGCTGAAGGAGCGGCTATCGGCCTGCTACGGCGTTTAGATGCCCCTCCTCACTGACACAGGACACGCCTGTTAGGTCGAATCTCCGGGAGGGTCACTGGGGGAACTcatccatgtgtgtgtattgcccTGCTGCTGGAGGGGGAGGCTGGCGCGACGATCATCCCTGcaccctgtgtctgtgtgagggAGGGTGGGAAGGGTGGGAGGGGGTTAGGGGGAGCCAACCTCTGCATCTAACGCTGCGGTTTAGCGTCCCGCGCTCTGAGtaggaattttaaataaaaatggaagcAAAAAGGGATCTAGGCTGGgatagagggagggagggaactCGTAGGCAGGGCTTGCCACCTGATAACTCCACAGCTCTCTTCTGCTGCGGGAGAGCACTATCGGGAGGGGGGAGGCTGGGTGGCACCAATGCACCCACCAATAGTACAGTCTAGTCTAAGCCCTGGCACCTCAGCTAGACGCCTATAGCACACAAGCGCATTCAGTAGACCGGCACACTCGTTAGACAAGCTTAAGGCGACCTGTTGCCCGGGTGGTATTTCTATAATGCATACATAAGAAAACTACAATATCTTAAAAGGTATTGGTTGACCACATCAatactaaaatgatttttaaccACAGGGATTGTTGGCTAGAGGTAAGGCACGAGATATTTATAACAATAGGGAGATAAGTACTAGCaccttttaaaaatatgtgatcATTACCAGTAAGTACAGTGCATATTGTCTCGCTTTCAGGCTGTTTTGCATATTTCCAGGCTGTTGTCGTTGTAACCACTTTGCAGCTGGCACTTAAGGTTCATTATTCTCCCCGTCAAAGTGTTTCGTGTTAACCCTGATTCTGCTGTAACCAGAACAACCTTCAGGAACTGTAACTCTAGTGctcactgttttttcctttcttatGCTTGCTTAGATAAGGGAATGATAAAGGTTTGCATGACTCTGGACCCTTGGAGAAATCTGTGCAATGTGCAGGTGTCaggttattgtttctttttttcttttcttttcttttctttttttttttttttttatttctttttaattcagaGCTTCTCACTGTACAGTGTTAGCAGGCGTAGCTTTATTGTGAATTTTCTGTTAGGTCGGTGTGGATCGATGTTCCATTTCCTTTTTCAGCAGTAGTTTGTGAGCTGTTTCACATCTAGATGTACTCCACTAAGAAACCATACTGCAGCCTGAACTTCCTGTAAACTAAGAGAATGTGCTGCTAATGCTTTTAAAAGcaaatgttattaattaaatgttaaggTGTCAGAACCCATTAAGGGGTTTTAATGCACTTTCTCTTATAAGGAATTTCACACAGCAATCCAGCAGGCTACATTAATGTCAAACTTGGTTAAAGGCAAGCTCCACTTAATGACGCTATTTCACAGCATAATAAACATGAGATGAAGGcacacagtgttttatcacGAGCGTGTAACTGGTGGTCCCCTGTACCGACAGCTTTTATGTATCAAGATTTGTACAGTTGATAAAGCCGTGTGTGGACGATAGCGTGTGGACGATAAATGCATATTCTAAATTAAGTGGCAAGTCTAAAACTTCTTCCAATCTTAAATGACTAATTCATTAATTCGTGCACTGTGACTCAACTTGTAGTTTAATGTAAAAGCAAACGAGTGACTCGAAGTTTAATGAAGGaaagttttgtttgtgtagCTATGGGTAGGCACAATATGCTGAATTTAGATTTCTTTTGGCCATctttataagacaaaaacaggTATGAGATGCATATAAAGAATTGCACTGTTTCCCAGACAAAGCCCATAGTCAAAACTTGCAGGTTGTTCACCATGTGTTTGCTATATTAAGCTGATTTGACTGAGGCCTTATAGGATGCACACACCTGATTTATCTCTGCACAATTTTACATATTTGGCTTTAATACCAAAAAAACGTACAAAAAGCAGAGGCTGTTTGTTTATATAGCCATAAAAGCAATAGCCATGTCTCTGCTAGCCTGCAGACGCTTACGTGTCTTCAAGGTCCACCAGGCTTGCGGTGTCTTAGTCAGACTTGATGTAAAGTAAAACTGTAACATGCATGAAATGAAGACTCAGTGTGGTGCTTGTTTAATGTCTTTCTTCTGGATTTTACTTCCTGTGATGAGATCATTTGACCACCACTGAGCCAGTAATAGGTGATTTGAAGTACCTTTTAAAATTGATTTGCTTCTTCAATAATAGCAATGACAATCTAATTTCCACTATCTACTCTTTTGCAAACTGCTCCTTCCTCAGGACTTGAGAAATAAGTAAATGACAAAGCAAGTGTTGGTCAGTAGGCATTCAAGGGGGGGGGGGAATTACACCAACTAATATAAGATTTTGTGCAGGTTATTTTCTACCTATAAACCAATCTatggttaataaataattaattctgaAGTACAGAATTTGAAGACCATCCTAAAGTGTGCAGGCCAGCCAAACCGATTGTAATCAAACAGAAACTCTGCTGTGAGCTCCCTGTtataagaaatacattttatttaaaaaatgcaaagcaaACTCCTTATTTCCTGCAATATGATTTGTCCACATGTgcttttttgttatataattttattttttgttttattttattttgttatattttgtgttttataagCACAAAGGTTTATTTGgactttaaaagtttttttttattattttctttttgtttaaagaattttgtttgttgtttatcaACCAGTTCTgacaagcattattattattattattatttttttttaatcaaccaGTTCCAAAAAGCAATTAAGATGGAAGGAGGGGAATGCATTTGAGCCTGTACTGTgtacttagaaaaaaaaaaaatctgctgaatgatgtagtgtttttttcctcttccacACTGTGGTGCAAACTCATTTATCTCTCATCACCTTTCTGTTTTAATTCTGTGAAATGGGGAAATAAATTCTTTTCTACCAATGGGG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579362.1 lncRNA downstream 135784 11845573 ~ 11879417 (-) True LOC117598828
TU248316 lncRNA downstream 350072 11664485 ~ 11665129 (-) True G209646
TU248307 lncRNA downstream 367204 11642168 ~ 11647997 (-) True hmox1a
XR_003402897.2 lncRNA downstream 389133 11619540 ~ 11626068 (-) True LOC113527962
TU248548 lncRNA upstream 35496 12068254 ~ 12068622 (-) True G209829
TU248549 lncRNA upstream 36055 12068813 ~ 12069180 (-) True G209830
TU248551 lncRNA upstream 37538 12070296 ~ 12070602 (-) True G209832
TU248558 lncRNA upstream 43914 12076672 ~ 12077073 (-) True G209839
TU248554 lncRNA upstream 50978 12083736 ~ 12084702 (-) True G209835
XM_026916022.2 mRNA downstream 2225 11964121 ~ 12012976 (-) False tmem104
XM_026916024.2 mRNA downstream 2409 11963695 ~ 12012792 (-) False tmem104
XM_026916021.2 mRNA downstream 2410 11964121 ~ 12012791 (-) False tmem104
XM_026916020.2 mRNA downstream 2411 11963695 ~ 12012790 (-) True tmem104
XM_026917039.2 mRNA downstream 187094 11826285 ~ 11828107 (-) True rln3a
XM_026916587.2 mRNA upstream 114738 12147496 ~ 12153883 (-) True LOC113528185
XM_026916823.2 mRNA upstream 157314 12190072 ~ 12200474 (-) True slc5a11
XM_034310196.1 mRNA upstream 157314 12190072 ~ 12197857 (-) False slc5a11
XM_026916812.2 mRNA upstream 169210 12201968 ~ 12236027 (-) True grid2ipa
XM_026916822.2 mRNA upstream 206378 12239136 ~ 12248090 (-) True e4f1
XR_003402968.1 other downstream 259278 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 314100 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 449073 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 478523 11536560 ~ 11536678 (-) True LOC113528647
XR_003402978.2 other downstream 582573 11432510 ~ 11432628 (-) True LOC113528663
TU248755 other upstream 267247 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 301100 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 516071 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 516071 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 516072 12548830 ~ 12559213 (-) False tom1

Expression Profile