RNA id: XM_026916697.2


Basic Information

Item Value
RNA id XM_026916697.2
length 3099
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC113528252
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18101441 ~ 18161879 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATACATCTTTTTAACTTACGTGCTTGATCTTTAGACATTCGTTTTTTGACGTTTATTGTGTAATCCCTAGCCCCCTAGGCTAGAGTGCTTACACAAAAGTTCAGGTTGAAAACCTTTGCTTTAGATGATTATTGCACAGTTTTAAGAACGTTTGGAGTGTAAAATCGATCTGCCGTAAATAGGCGTGTTTGTCGTAAAGCTGGTCGTTACCATAGCTACTAGCGACTCAGCAACACATGTGTCTAGTAATGGCGACAGAAGAAGAACGTGCTGCTGCGGAAATTATGAGATCTTTGGCCCGACACTTAAACTGTTTGAATGAAGGTGAGAAAAGCACAAGAAAACAAGCATTGGaggatataaaaaaagaaaccatcGAGAAAGGCTTGTCAAGTACCGTGTTACAAGAAGTTTTTGCGTGTCTGCTGAAGCCGCTTCTGAGATGCCTGTCAGATCCTATGGAAAGATGCCGAGAAGTTGCTATTCAAATAATTGGAGACTTCATAAGATGCGTTTCAAAACCAGAGTCGTCAATGCCTTATATAATGCCTTCCTTGGCTCAGCGACTCGGTGGAAAAGAGATAGTAGAACCAGCAGAAGAGTTGCGGCTGTCCATGGTAGAAGTTCTGTCGCTTATTGTAGAGGTCTGCGGGAGACACCTTGCCCCGTACCTGGATGATATGATAAAAATCCTGCAAAAAACCATAATTGACCCTTTCCCCGACGTTATAAAGGAGAGTTGTAAATGTACAATACAGTTTGCCCGGAGTATACCAGACCACTTCCACATGCAAGCAGAGTGCCTGGTTAAGCCCTTGATGCAGACTATCTCACACCAGCATTCACGGGTGCGAATGGCTATCATAGAGGCTTCTGGGGCTGTTATCCAGTATGGCACAGTGAAGACCATGGATGATGTGCTCTCTCACATGGCACAGAGACTGTTTGATAACTCACCCCAGGTAAGGAAGGCTGTGACTTTGGTTGTTGGTGACTGGCTTCTCAACCTCCGGGACAGATACTCTTACTTCCACAAGCTTATTCCACTGTTGCTGAGCAGCCTCAGTGATGATCTCCCAGAGATAAAGGCTTTGGCATGTGAGCTTTGGAGGCAAGTTGGTACTCAGtgggagaaagaaaatgaagatgaTCTGAAGGACAAAATGGACTTCTTCCTTTCCTCAACTTTGCAGTACCCTCCTGGAGTGGATCGTCCAGGGCTGGGCTGCAGAGAGCTGGTGGTGAGGAACTTGTCTAAGCTAATGCCGGCCTTGAGTCGTGATGCTAGTGACTGGCTAGTGCAGACAAGAGTGAAGACAATGCAGCTACTTCAGGTTCTCCTGCTGCATGCCGAAGACCACTGCACACAACACCTGCAGCAACTGCTCACAACTCTCTACCATGCCTGCACTGACTCAGAACAAGACGTTAGAACAAACGGTTTGGAGTCAGCCAGGCTTCTAGGGGTGTTTGTTAGCCCAGAGGTCTATATCAAGCTATTACTGGCTCATGTGAAGAACTCTTCCTCCTGCTCCAGTTCTTCTCCTTGGGCTCCTCTGATGGTGTTAGCGGCAATGATGAAGGGGAGCAACAGGAAGGTGCTGGGTCCACAACTTCTCCAGGTTGGACAAATACTtgcccattctgatgtctgtCAGGAGTCTCAGCAGACCGTGTATGTTGAGCAGCTACTGGCATGTGTGGAGGTTCTTCTGGAGGTGTGTGAGGAAGATTGTGGCGTCATCAGTCTTCCACTGCTAAAGGTTCTAGTGACCATGCAGTGTGTATCCACAGAGCCACAGATCCATACTAAGGCAGAGGAGTGTATATTGCATTTGTGTCAAGTACTAAGTCTCAGTAGTGTGCATGAGCTCTACAGACAGCACATGGCACAATTACTGCAGTGGCTGTTGGAATCCCAAAATTCCTGGTCCACTTACTCTATCCAGAAAACCCAACTGGAGATTATCGCCCTTCAGTCcgGCCCAGTGGTTGGAGAATTTCTCCCAGAGCTCATGCCTCTATTGCAGAATTGTTTATTGCCGAGTCAAGACCCAGAGATTCGGCTGCACGTTTTCACTATGCTCTCCAAGCTTCTGTTGAATTCTAGCAATACATTGGATTCACACGGGAAGTTTTGTAAGTACCTAGAGGTGTTTCTGAAGGAGCTTCTGTTGCCTAATCTGGTGTGGCGTGCAGGCCGTGCTGCTGCCGCAGTTCGGAATTCAGCTCTCAGCTGTCTACTAGCTACGCTGCAGGGCGGAACTCTTTCAAAGGAGCAGGTTCTAAATATGGAGACAGAATTCAGTGCTTATCTGATTTCAGCACTGGAGGAAGACTCGGAGCTCTCTCGTCTGTTGGCCTGTAGATCAGTATCCTCATTCATTACTGTTGCAGAACGATGTCTTAACCCAGACACACTCAACAAGATCTATCCAGAGCTTTTAAAACGGATAGATGACAGCAGCCCGGAAGTGCGCGCTGAAGCTCTGAAAGCTCTGAGTGTGTGGCTCTCATCTTTAGACAAAaactatgacacacacacataccacccCAATCTGGAGTTCCTTTTCCAACAATTGCTGCTGTACTTAGATGACCCTGACCACCAAATCCAGCTTATGGTACTGGAGGTTCTGAAAGCCAGCAGTGTTGCAGATCCTGTTCTCCTGCAGCAGAAAgtggaggaagtgagagagaaactGCGCAGCTTTGAGTACTGTGATCAGCTGCTCCAGTACATTCAGTCCCACTGATGGACTCCCACAAAGCATTGTCCAGTGGACTGCATACAGCTTCTAACTTTCTAATATTTGGTAGATCAGAATTTTGATTTGAAAGTTGTTTCTTTATATGGTCATATACCATGTTGCTTTTCTGGTATTACTTTATCTAAGGagatctgtaacaaagtttttaAATTGTGTCAATTGTCAGTCATGGTTTGCTATATTACTTAGTTGTAATTCTACAGGATATAGATGAAAGTAATATGGTTAGCAGTAGTATCGGCattcttttttgctgtttttttattttcaaatactGTTTGATATGTGTTATTGCTGTATTTGCATTAAAGGCAAACATGGTAGAAA

Function

GO: NA

KEGG:

id description
K19759 DNAAF5; dynein assembly factor 5, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579431.1 lncRNA downstream 25054 18070785 ~ 18076387 (-) True LOC117599003
TU252323 lncRNA downstream 47226 18050735 ~ 18054215 (-) False mettl23
TU252320 lncRNA downstream 47226 18050833 ~ 18054215 (-) True mettl23
TU252315 lncRNA downstream 58162 18041404 ~ 18043279 (-) True G213028
TU252161 lncRNA downstream 201171 17900070 ~ 17900270 (-) True G212891
XR_004579422.1 lncRNA upstream 213805 18375684 ~ 18377255 (-) True LOC117598999
TU252732 lncRNA upstream 630556 18792435 ~ 18849147 (-) True G213407
TU252741 lncRNA upstream 661592 18823471 ~ 18827432 (-) True si:dkey-204f11.64
TU252898 lncRNA upstream 861879 19023758 ~ 19031157 (-) True G213549
TU252899 lncRNA upstream 863193 19025072 ~ 19072985 (-) False G213549
XM_026916911.2 mRNA downstream 47225 18050803 ~ 18054216 (-) False mettl23
XM_026916914.2 mRNA downstream 47264 18050803 ~ 18054177 (-) False mettl23
XM_026916913.1 mRNA downstream 47279 18050803 ~ 18054162 (-) False mettl23
XM_026916912.2 mRNA downstream 47310 18050803 ~ 18054131 (-) False mettl23
XM_026917086.2 mRNA downstream 115553 17981013 ~ 17985888 (-) True jmjd6
XM_034310201.1 mRNA upstream 228003 18389882 ~ 18394978 (-) True LOC117598994
XM_034310203.1 mRNA upstream 414725 18576604 ~ 18577377 (-) True LOC117598995
XM_034310063.1 mRNA upstream 549201 18711080 ~ 18720341 (-) True znf207a
XM_026916637.2 mRNA upstream 549201 18711080 ~ 18720334 (-) False znf207a
XM_026916638.2 mRNA upstream 549201 18711080 ~ 18720334 (-) False znf207a
TU252076 other downstream 247802 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 426157 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 675540 17386211 ~ 17425901 (-) True G212700
XR_004579434.1 other downstream 781722 17292851 ~ 17319719 (-) False LOC113528519
TU252457 other upstream 214198 18376077 ~ 18377363 (-) False LOC117598999
trnat-cgu_6 other upstream 914390 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 1283110 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 1878544 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 2250970 20412849 ~ 20412930 (-) True trnal-aag_9

Expression Profile