RNA id: XM_026916699.2


Basic Information

Item Value
RNA id XM_026916699.2
length 3910
RNA type mRNA
GC content 0.45
exon number 21
gene id slc4a1a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8249885 ~ 8267638 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCATCACTCTCCTTTtcgatctatctatctttcttacACCCCCTGCACGGTTACTCCTGTCCTGGAAGACAGCGGGTTTTACAGTGCAGCTGCGGATCTCCACACTCCGAGACAATAAAGAACCGCCAGAAACACCTGGATCCAGgTTCCGTGTAATGTTTTTCTGagtttaggggaaaaaataataagaaggcaGAGCACAGGCCCTACTGATGGAAGCTGTTCTAAATTTTCCAGGGGACAATGACATGTCCTATGAGGATGCTGATTCACCTCCAGCCTCACCATTCAGCATGACTCTTCCTGAACATACAGGGAGTTATGACTTGGAGCAGAAGAGACAGGAGCAGCAGGAGGGGCAACCTCCTGAGAGCTACATCATCAATACACACCCAGATGCGGCCTGGAACACCAACACCAACGCCACCACCAGAGGTGACTCTCAGtcataTGTGGAGCTGAACGAGCTGGTGGGGGAAAAATGGCAGGAGACCGGTCGCTGGGTGGGGTATGAGGAAACATTCAATCCAACCACTGGGAAATGGGGTTCCTCACACATTTCCTGTCTCACTTTCAGAAGCCTTATTCAGCTCCGCAGGGTCATGAGCACAGCGGCAGTGCTGTTGGACCTGAGCGAAAAAGACTTCATAGTCATTGCTGAGAAGATCGTAGATGAACTTCTGGGAAAGAATGAGATTCGGGCCTCAGATCAGGGGACCTTGCTGAAGGCATTGTTAGAGAAGCGCAGTCAGGCTGGTGGCACTCAGGTTACCTCAGCAGGCATTGAGATGCAGACCTTCTCTGTCACCAAACAGAGAGACACATCTGATAATGTAGAGGCATCTATTGTGTTATCAGGTGCGGTGGACTCCCTACAGAAGCCGGTTGTGGCATTTGTGCGACTGCAAGATTCCGTGGTGATGGACGGGATTATGGAGGCTTCTGTGCCTGTGCGTTTTATATTTGTCCTGGCAGGCCCTGCTGAGAGCGGCATAGATTTCCACGAGAGCGGACGTGCCATGGGTACACTCCTGGCTGACTGGGTCTTCAGCTTGGAGGCCTATCTTGCCGATAGTGAAAAAGAGCTGAATAATGCTATTGCTGACTTCATGGACTGCAGCATTGTGATCCCACCCACTGAGATCCAGACCGAGACCATGCTCCAGCCAATCATCCGCTTCCAAAAGAAAATGCTACATGAAAGACTCCGCCCTGCTGACACCCGAATCCTACTTGGAGCAAAAGCTAAAGAGCCTGAGCAGCCATGGGATGATCCATTGGCTCGAACTGGATATCCATTTGGTGGAATGGTCAAGGACATCAAGCGTCGTTACCGCCATTACCTGAGTGACTTCATCGATGCCATAAATCCTCAGGTGCTTTCTGCCATAATTTTCATCTATTTTGCTGCCCTTTCTCCTGCTATCACCTTTGGAGGCCTTCTGGCGGATAAGACAAACAAATGGATGGGAGTGCCAGAGTTGATGATCTCCACTAGCATACAGGGAATCATTTTCTGCCTGTTTGCCGCCCAACCTGTGCTGGTCATCGGCTTCAGTGGGCCACTGCTGGTGTTTGAAGAGGCGTTCTATAATTTTTGTAATTCTCAGGGCTACGAGTACATTGTGGGTCGGGTATGGGTTGGAATGTGGCTGATCATCATTGTGTTGATTGTGGTAGCAGCAGAGGCTAGCTTCCTCGTCCGCTTCATCTCTCGTTTTACCCAAGAGATCTTCTCCATCCTTATCTCCCTCATTTTCATCTATGAAACTTTTTTCAAGCTTTACAAGATTTTCAAAGATTACCCTCTGAAAAACACTTCAGTTGCCAACAGCACAAACGGCAGCATGGCTCAGGACCACTACCCCAACACTGCCCTGCTCTCTATGTGCCTGATGTTGGGCTGCTTCTTCATTGCCTACTTCTTCCGTCGATTCAAGAATAGCATCTTCCTGCCAGGCCCTATTCGTCGCATGATTGGAGATTTCGGTGTGCCCATCGCCCTCCTTCTCATGGTTGTGGTTGACGTCAGTATTAAGGATGTTTACACGCAGAAATTGCAGGTTCCAAAGGGTCTGAATGTGTCCAAACCTGAGGAAAGAGGCTGGATTATCAACCCAATGGGACTAAAGGAAACATTCCCCACTTGGCTAATATTTGCCTGTGCCATTCCAGCCTTATTGGTTTTCATTCTCATCTTCCTCGAGTCCCAGATCACAACGCTGATTGTAAGTAAACCAGAGAGAAAGATGGTGAAGGGCTCCGGCTTCCATTTGGATTTGCTCCTCATAGTGATGATGGGTGGAATTGCCTCCATTTTTGGTTTCCCCTGGCTTAGTGCTACAACAGTGCGATCTGTCACCCATGCCAACGCCCTCACTGTCATGTCCAAAGGCCCTAAACCAGAGATCACTAAGGTGCTGGAGCAGAGGGTTAGTGGGATTATCGTGGCCACTTTAGTTGgtgCATCCATATTTATGGAGCCCGTCCTGACGTTGATTCCCATGTCAGCTCTGTTCGGCATCTTTCTCTACATGGGTGTTACTTCTCTAAGTGGTGTTCAGCTGTGGGATCGCATACAGCTATTGATCGTGCCCAAAAAGTACCACCCATCTCTTCCATACGCCACTCGAGTAAAAACCTGGAGAATGCACCTCTTCACCCTTATCCAACTGGTGTGTTTGGGCATCCTGTGGGCAGTGAAATCCACCGAAGCTTCGCTGGCCCTGCCGTTTGTCCTCATTCTTACTGTCCCTCTGCGTATTTTCATGTCTGGACGCCTCTTCACTACCACAGAGATGAAATGCTTGGATTCAGATGATGCCAAGGTGACATTTGAGGAGGAGCAGGGGGTGGATGTGTATGATGAGTGTCCCTTCTCATAAATGACTTCTAGCATTTCACTGAACCTGTGAGCTCAGGCATCATGCCTTAAACTCTGTCCAGTGCCTTCATTAAACTATCGCAAGAGTTATAGTGTGGAACCACAGGAACAGGACCCACAGTGTCAAAACCATCGCATAGTCAAGCTTTATCAACCTTTTTCTGGTTTGCAtgcacattttaatcatttcccACTACTGAGTAGATCCTCTATACCAGTTCATTTTTCTCCTAAGACTGTTTTGCTTTACTTTTTGAATTGTTagattttatattgtttttatcaTACAGAGTGCCCGAAAAGTCTCCATACGTAGGGGACTATGTAAGCCAGCACCACGTCAATTGTGctttcgtcagtggatgttcatggacgttTTGACAttagacattttgctaaaaagtgttaatttcccctatgtgtgGAGACTTTTGAGACACCCGTATGAAAGCCATTAGCTAATAGTGTTTAATAACTTCTTTTTTAAGCTCTATGCAAAAGCTTTTTTCTGTGCAGCATTTGAGATTAAATATAGTATTATGCCTATAATGTGTTTCTACATTGACAGTAGCTACAATATCAccctgtgtctttttttttttgattgattgatattTGTTTCAAATATCATATCTGTAAATTTCTTATTCCAGTCTAGCAGTTGCTGAATGATTGTTGTTGCAGTTTATGAGATCATGgatattttagaattttgagTGGGTTTGAATAGTGATGAATGTACATtctgttttattgttatattttttttttatatttaatcttGTGTTGCAATTCATGTAACTATTAAAATTCTATTACTAAAATAATCTTATTGCCAATACAGACCTGGAGAAAATCTTTCATTTGCAGATATTATCTTTCATTAGCAGAGGTATTATagcaaaatgaaatataatggTAATTTTTTAGACAAATATTAGGGGGGAACTGAAGCACAAATgtgaatttattaaagaagtaaGTGAATTAAAAGTAATAAACTGTGTCATTAAAACAAgctaaaa

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG:

id description
K24194 BOR; boron transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245903 lncRNA downstream 49107 8176358 ~ 8200778 (-) False G207650
TU245901 lncRNA downstream 49107 8195899 ~ 8200778 (-) True G207650
TU245906 lncRNA downstream 135311 8110658 ~ 8114574 (-) True G207653
TU245805 lncRNA downstream 213037 8033282 ~ 8036848 (-) True G207571
TU245797 lncRNA downstream 220436 8029206 ~ 8029449 (-) True G207565
TU245977 lncRNA upstream 12327 8279965 ~ 8282317 (-) False selenow2a
TU245974 lncRNA upstream 17511 8285149 ~ 8289767 (-) False selenow2a
TU245988 lncRNA upstream 86072 8353710 ~ 8358074 (-) True G207732
TU246052 lncRNA upstream 164360 8431998 ~ 8432261 (-) True G207793
TU246126 lncRNA upstream 225177 8492815 ~ 8493041 (-) True G207860
XM_026916495.2 mRNA downstream 1096 8238150 ~ 8248789 (-) True ubtf
XM_026916494.2 mRNA downstream 1703 8238150 ~ 8248182 (-) False ubtf
XM_026916496.2 mRNA downstream 2183 8238150 ~ 8247702 (-) False ubtf
XM_034310100.1 mRNA downstream 3378 8238150 ~ 8246507 (-) False ubtf
XM_026916462.2 mRNA downstream 13263 8226297 ~ 8236622 (-) False atxn7l3
XM_026916916.2 mRNA upstream 12129 8279767 ~ 8289808 (-) False selenow2a
XM_026916915.2 mRNA upstream 17511 8285149 ~ 8289808 (-) True selenow2a
XM_026916186.2 mRNA upstream 299133 8566771 ~ 8660121 (-) True spop
XM_034309852.1 mRNA upstream 299133 8566771 ~ 8650751 (-) False spop
XM_026916037.2 mRNA upstream 440514 8708152 ~ 8713297 (-) False ndufa4l
TU245460 other downstream 818813 7425730 ~ 7431072 (-) False natd1
TU245462 other downstream 818813 7425730 ~ 7431072 (-) False natd1
TU245466 other downstream 818813 7425730 ~ 7431072 (-) False natd1
TU245410 other downstream 927923 7318603 ~ 7321962 (-) True G207231
trnac-gca_20 other downstream 975508 7274306 ~ 7274377 (-) True trnac-gca_20
XR_003402976.1 other upstream 16836 8284474 ~ 8284592 (-) True LOC113528661
TU246334 other upstream 440316 8707954 ~ 8713318 (-) True ndufa4l
trnav-cac_10 other upstream 919882 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 928858 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 928858 9196496 ~ 9203640 (-) True dnal4a

Expression Profile