RNA id: XR_003402918.2


Basic Information

Item Value
RNA id XR_003402918.2
length 2475
RNA type misc_RNA
GC content 0.58
exon number 14
gene id rapgefl1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9944306 ~ 9987773 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaggaggaggaggaggaggatcgAAAAGGAGCTGCTGTCGCGTttgcaacacactcacacacacaccccgttGGGTGTGTATACTGCATGTAGGCACGAGAGAAAGCGCCGTGTTTTAGTTCACCGTCTTGTGTGTGTACGGGAGCTTTGTGGAATCTGTGCTAGTGCTTCATTAAGGCGGTGGAGCCTCTTCACCCGCAGCCTCACGCAGCACCGAGCATTTGTGTCACCCATCTGCATCCTGACACAGGAAAACGGCGCCGTGGATCTCGCACACGCTTCATCTGCGTTTCACGGACAACTCGTCTGATTTCTGGAACCATGCTTGAGCATGGCATGTCTTGGGTTTATATGCAGTGAGTGAAAATCGCCCGCCTCTCCGACGCGACCTGCACGACTGCAGAGGACGAGACAGGGAGGGAGCAAGTGGCCCTCAGCTCAATCCTGCGTGCTCTGGACTCGTGGATCCTTCAGTCCCAGCGCGCGCTCTGAGACTTCACTCTTCAGCAGGCAGACCCACTGATGGCTGCGTGTTCATGACCCAGTTGCAGCAGGGAGTGTGAGCAGCATTtgcggggtttttttttgtttgtgtgtttgtttgtttcacgGTAACTGAGCTACAATGTAAACGCGCGCGGTTTTATTCCCGCTGCCTGTATTGCTGTATTGGTTATCAGTCAGGATCGACGCAGGGCTCTTCTACGTGCTACCTTCATCAAAATGCCGGCCGGAATGAAGCCTCTAGAGAAGTTCCTTAAGAAACAGACGAACGCGCTGACTCGGGCCGGTGGTTTCGGAGGAGAGAAGGCGGCGGCGGGCACGAGCGCGGCTCGGCGGCGCCCCAGCCTCTCGCGCGTCGTGCCCTTCTTCCGCGAGAGCTCGCCCGAGGGCGGCCCGGCGCGCGGCGACGTCTTCAGCCCCGAGACCGAGGAGGCTCCGTGCTGGCCGTCGGCCGCCGCTACTGACATCCGGAGCCCGTCTCTGTCCAGCGACGAGCAGAGCTCCGAGGCGAGCCTGGACACGGGCTGGACCCCGCTTCCCGCCGACACACCGGAGAACCTGGCGCTCGCGCTGCTGGACAGCGTGGCGGGCAAGCGCTACGGCAACTGCACAGAAATACTCCTGGACGACTTCATGTTGACACACCCAATCTTCCTGGCATCTGACAAGTTTCAGCAGGTCCTGCTTCAGCAGTTTGGAGCTGAACCCAAGCAGGGCGAGGGCTGGCCCACCTGGGATGGAGCGGAGAGGAAGCAGGCTGTGCTGAGTGTGGCCTTCCGCTACCTGGACACATACAGGGAACTGTTACAGGAGGAGGGGGACAGGTCCAACAGTTTCCCTAAGGACTTGTACCTCTGTGCCGTGCAAGAACTCAGCCGCTTCCCCGAGCTGGTGGAGGACGTTCTAAAGCTCCAGCGCTGGACTGAGATCCTTCACAACCCgGCAGAGGAGGACAAGGAGAGTCGGAAGAAGCAGGTGCGTCCACTCTTTCGCCACTTCAGACGCATTGACGCCTGCCTCCAGCCGCGAGAGGCTTTCCGTGGCTCAGACGAAATTTTTTGTAGGGTGTACACACCCGACCACTCGTACGTGACCATCCGCAGCCGTCTGTCCTGCCGCGTTGGAGAGATTTTGGCTCTGGTGCGAGAAAAGCTCCAGTACAGTGAGGAGCAACCGACTCAACCAGGCAACCTCATACTGGTGGCTGTCACCTCATCTGGAGAGAAAGCTGTGTTCCGTCCCAGTGACGAGGCTGTCTTCACCACTCTGGGCGTCAACACGCACCTTTTCGCTTGCGAACCCTCTGAGCTCGAGGGCCTGatGCCCCTGCCTGAGGAGATCCACTGGTCCCCGGGTGACAGTAAACTCCATGACATGAGTGCAGAGGAAGTGGCCAACCAGCTGGTGGTGTTTGATTGGGAGCTCTTCAGCTGTGTGCACGAGGTGGagtttgtgtgttatgtgttccATGGAGAGGAGGCTCGATGGCGCCCCCTCAACCTCGAGCTGGTGCTGCAGCGATGCAGCGAGGTGCAACACTGGGTCGCTACTGAGATTCTGCAGTGCCAGTCACTGCCTAAGAGGGTGCAGCTGTTGCGAAAGTTCATCAAGATCGCAGCTCTGTGCAAGCAGCAGCAGGACCTGCTGTCGTTCCTCGCTGTAGTTTTGGGGCTGGACAACCCTGCAGTTAGCCGTCTGCGCCTTACCTGGGAGGCTTGCCCGGAAAGTTCAGGAAGCAGTTCCAGCAGTTTGAGAGCATTGCGGATCCCTCCAGGAACCACAAGTCATACAGGGACCTCTTAGCCAGTCTGAGGGCTCCACTCATCCCCTTCACCCCACTACTGCTCAAAGaTCTGACTTTCCTTCATGAGAGCTGTAAAACCTTCCATGGGGAATTGGTTAATTTTGAGAAGATGcATAAAGTTGCAGAAATGGTGAGGAGCATCAGGCGGTACAGGAGTACTCAGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246996 lncRNA upstream 61179 9864977 ~ 9883127 (+) True G208504
TU247001 lncRNA upstream 85424 9846084 ~ 9858882 (+) True G208507
TU246950 lncRNA upstream 196296 9746285 ~ 9748010 (+) True G208472
TU246951 lncRNA upstream 196296 9746850 ~ 9748010 (+) False G208472
TU246862 lncRNA upstream 205440 9737009 ~ 9738866 (+) True G208415
TU246973 lncRNA downstream 59455 10039409 ~ 10061965 (+) False G208488
TU246974 lncRNA downstream 59455 10039409 ~ 10061965 (+) True G208488
TU246978 lncRNA downstream 59455 10039409 ~ 10061965 (+) False G208488
TU247237 lncRNA downstream 241329 10221283 ~ 10221539 (+) True G208700
TU247238 lncRNA downstream 245629 10225583 ~ 10226503 (+) True G208701
XM_026916963.2 mRNA upstream 18103 9917962 ~ 9926203 (+) True casc3
XM_026917260.2 mRNA upstream 27205 9912768 ~ 9917101 (+) False msl1a
XM_026917258.1 mRNA upstream 27205 9912865 ~ 9917101 (+) True msl1a
XM_026916952.2 mRNA upstream 50810 9886784 ~ 9893496 (+) True si:dkey-225f5.4
XM_034310316.1 mRNA upstream 50810 9886802 ~ 9893496 (+) False si:dkey-225f5.4
XM_026916863.2 mRNA downstream 212850 10192804 ~ 10195206 (+) True LOC113528352
XM_026916903.2 mRNA downstream 235091 10215045 ~ 10222874 (+) True LOC113528384
XM_026916301.2 mRNA downstream 318933 10298887 ~ 10341715 (+) True helz
XM_026916197.2 mRNA downstream 446105 10426059 ~ 10448685 (+) True lmtk2
XM_026916198.2 mRNA downstream 446105 10426059 ~ 10448685 (+) False lmtk2
TU246534 other upstream 880991 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 1041629 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1936039 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 2090797 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 2644622 7299613 ~ 7299684 (+) True trnac-gca_21
TU247340 other downstream 369448 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 392461 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 433030 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 1557093 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 1587165 11567119 ~ 11577823 (+) False luc7l3

Expression Profile