RNA id: XM_026916703.2


Basic Information

Item Value
RNA id XM_026916703.2
length 3116
RNA type mRNA
GC content 0.55
exon number 16
gene id cog1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18902663 ~ 18915773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTTATTTAATTTCCCACCCGCATTTCGTAAAATCCCGCCTTCCGCGCTAGGATTGGCTCACACTCACGAGCAGGCTGCCTGATTGGACAGCTGGCAGCTCAGAGAAACAGCGATGGCCGCGGTTCCGGTTCAGGCACTCCGGGTGTCGGATATTAAAGACCCGATGGTGCTGTTTGAGCGCTACAGCACTGAGGAGATCCGCGCGGTGGAGCGGAAAGTTCGCGGGGAGATCGAGCAGAAGAAAGAGGAGCTGAGGCAGATGGTAGGAGAGAGGTACAGAGACCTGATCGAGGCTGCGGACACCATCGGCGAGATGAGGGAGTGCTCTGAGAAAGTGGTTCAGTCCATCCAGGACATGCAGAACTACTgtcacacactgaaacacagcaaacacactccTCAGAGCAGCAGAGCAGAGGGTGAGAAGCAGTCACAGGAGAAGTTTTACTCGATGGCGGCTCAGATAAAACTGCTGCTGGAGATGCCTGAGCGGATGTGGAGTGCGCTGGAGGGAGCTCAGTACCTGCAGGCCACACAGCTGCACCTCCTCTGTGCTCACCTGCACCGGCTGCTCCACCTGGACACGCCCACCGCCTCATACAGCCCTGTTCTGAGCCGCTTCCCCATCCTCATACAGCAGGTAGCTGCCGCTGGACACTTCAGGTCAACGATCCTGTTGGACAGTAAGTCGGTGTTGCGGGGCAGAGCCGTATCGGATCAGGCTATCGCTGAAGCACTGGTGTCCACCATGCTGCTGGAAGACAGCTCACCTCGCAAGGCCCTCGCTGACTTCCTGCTGGCCAGGACAGCGTCCATACAGCAGCTTCTCAAGCAGCCTCAgcacgGAGCTGGGATTAAAGCTCAGGTCTGCTCTCTGGTGGAGTTATTAGTCACCACGCTTTATCAGGCCCACGCTGTGTTCTACCTGCCTCCGGAAGGCCGCGCGGCAGAACCTGGACTCGGCTGCGGGTTGCTCTTCACTACGCTGGAGAACGTCACATCCGGTAAAGGCAGGAAGGTGTTGCATGGCGAGGTGAGTTCAGGCAGCTGGTTTAAGTATCTGCCGTCGTCAGTGACGGATTTCCAGCCTGCGCTGCGAACGCTGGCTCAGCCCATCCAGAGCGAACAGCTCCGGGATACACTGCAGCACTGGATCGACACGTGTAAAGAGGACATGCGCAGCGGCGTGAGCAGCCTGCTCATATACGTGAAGAGTTTGAAGGGTTTGGCCTCCATCAGGGACGCGGTGTGTGACCTGCTGAGCAGCGACTCCATCAGCCAGCACTGGAGCGGAGTGTGTGAGCGCCTGCTGGATAAACCGCTCGACCTGTGGCATGACCTGCTGCAGCCGCTTTTCCTGCACAGACTGCAGGTGATTACTCAGGAGGGCATGGAGGCGATCtccagcagctgtaaacagctgtTGTCCTCCACACTGCAGGAACTGGAAGGCGAGGCATTGAGCCGTGGTTCGCGGTTTGAGAGCGACGTGTCCTCATTTCTTTGGTGCGAGTCTCAGTCGGACCTGCCGAGTGATGCAGCGTGGGTGAGCGTGTCTCAGCGCAGCTCACGGCCTGAAAGTGGCCTGTCCATGAAGACTCACGCCCTCACACCGCGCGTCCAGAACTTCTGCGCCGCCCTCGACTCCAAACTTAAGGCCCAGCTTGAGGATCTGGGGCACTTCCTGCCCTCGGACACTCCTGCCTCATGTCTGAAACGCTACACAGACGGGCCAGCGGTGGAGCAGGCGCTGAGCGAGCGCAGCACGGCCTGTCTTATGGAAATCATGAGCAGCGTCCGCACCGAACTAGCAGCTTCATCAGGTCGAATGAGCTCTGTCCTTTTCCTAGCCAGACTGTGCCAGTCTCTGGGGGATCTCTGCCCCAGCCTAAAACAGTGCATTCTGGGCCGGCAGGGGGAGAGCAGAAACACAGGAAGCCCCCGCGTCCAAAGCAGGAAGTTGGGAAAAGCAGGTGTGAGTAAAGGTTTGGACCTCAGCCCAGCTCAGGTCACATGGGCCCGAATGAAGGAAGAGCTGCTTACCTGCAGCATGGAGGCGTATCGCATCTGGAGCTCTGCTGTGTCCCAGacTTTGGTGAGGCAGTTTGCTAGTTCTCTGCACGCTGCAACACCTGGCTCTGTCCTAATAACTGCCACAAACTGGGAGGAGCTGGAGATCCAGGAAGAGGCGGAGTCAGGCAACACGGTCATGTCTAAAATCCATCTTCCAGTCCAGCCCTCGTGGTACGTTCAGTCTCTGCTCTTTCACCTGTGCCTGGAGGTGAATAAGGTCGGAGGTCACGCCGTGCCGAGGATCACGCTGACCGAGCTGCTGCAAGCCTGTCTGGATCAGGTGCTCACAGAATACGATAAGATCACTCAGCCCACGCAAAACAAGGATGCATCACTCCCCATCACTCAGAATCGAGGCCTGCAGCTGCTGTTTGACGTGCGTTACCTCAGTGCCGCTTTAACAGCTCGGCTAGAGGACACCAAGAGCTCGCGCTCGCACGTGCAGCCCAGGATCCAGCAGATCTGTGACGCTCTGGAGAGCCACATTGATCCTTTTGACCTGGACGTTTTCACTCCTCATCTGAACAGCAACCTGAACCGGATGACTCAGAGGACATCGGTGCTCTTAGGCCTTTTAACTGGTGCAGAGAAGCACTTCACTCCCAGAAGCACTAATATGAGCTCACAGGAGCCGTACAACATCCTTCCACTGGCCAGCAGTCAGATCCGGTTTGGCTTATTGCCGCTGAGTATGACCAACTCCCGGAAAGCCAAATCATCATCTAGAGCGACAGACATGACCAGACCGCTTATTGCTCCCTCGTCCAATCCCATTCCAGAAGACAGCTTCCGCCCAGGGAACCTCTTCAGGCAGTTAGCCAATCAGGAAGAGGAAACTGTTGGCCCCTCCCTCTTTAAGTTAGGCTGGCTTTCTGGCATgggcaaataattttttttttttttctcgggTGAAGTGTAAGGTTTTTAAAGCATTATTCACATtctgtataaataatatatacatataaatatggTTTGAGATAAAAATAGTGTGCTTGGATTTTTTTATACTAgaaataaaggtgtgtgtgtgaaatgaca

Function

GO: NA

KEGG:

id description
K20288 COG1; conserved oligomeric Golgi complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252732 lncRNA downstream 53516 18792435 ~ 18849147 (-) True G213407
TU252741 lncRNA downstream 75231 18823471 ~ 18827432 (-) True si:dkey-204f11.64
XR_004579422.1 lncRNA downstream 525408 18375684 ~ 18377255 (-) True LOC117598999
XR_004579431.1 lncRNA downstream 826276 18070785 ~ 18076387 (-) True LOC117599003
TU252323 lncRNA downstream 848448 18050735 ~ 18054215 (-) False mettl23
TU252898 lncRNA upstream 107985 19023758 ~ 19031157 (-) True G213549
TU252899 lncRNA upstream 109299 19025072 ~ 19072985 (-) False G213549
TU253100 lncRNA upstream 501411 19417184 ~ 19422415 (-) True G213716
TU253270 lncRNA upstream 747564 19663337 ~ 19663762 (-) True G213879
TU253468 lncRNA upstream 1024581 19940354 ~ 19984149 (-) False lyar
XM_026917128.2 mRNA downstream 30517 18851456 ~ 18872146 (-) True gna13b
XM_026916886.2 mRNA downstream 58930 18836193 ~ 18843733 (-) True aldh3b1
XM_034309992.1 mRNA downstream 59350 18836193 ~ 18843313 (-) False aldh3b1
XM_026916137.2 mRNA downstream 74929 18823892 ~ 18827734 (-) False si:dkey-204f11.64
XM_026917230.2 mRNA downstream 84354 18803479 ~ 18818309 (-) False carm1
XM_026917282.2 mRNA upstream 6363 18922136 ~ 18936509 (-) True rogdi
XM_034310282.1 mRNA upstream 41276 18957049 ~ 18968781 (-) True scpep1
XM_026916936.2 mRNA upstream 191413 19107186 ~ 19126331 (-) False crlf3
XM_034310207.1 mRNA upstream 191413 19107186 ~ 19126277 (-) True crlf3
XM_026916976.2 mRNA upstream 357289 19273062 ~ 19288073 (-) False traf7
TU252457 other downstream 525300 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 1049024 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 1227379 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 1476762 17386211 ~ 17425901 (-) True G212700
XR_004579436.1 other downstream 1582944 17292851 ~ 17319719 (-) True LOC113528519
trnat-cgu_6 other upstream 160496 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 529216 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 1124650 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 1497076 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 2098666 21014439 ~ 21027259 (-) True fgf2

Expression Profile