RNA id: XM_026916709.2


Basic Information

Item Value
RNA id XM_026916709.2
length 3482
RNA type mRNA
GC content 0.50
exon number 16
gene id map3k14a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5057922 ~ 5078370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTACAGTCTTGTTAAgagggaagaggagagagagtgagacagagagagagagagagagagagaggaggggtgAGAAAAGAGAAGCCGGATGAATTTCTTGTAAATCAGCATACCGCATGTCCAATAAGATTGCTTCAGTCGCCTGGCAGCAGGCCAGCATCAGAGGTATACAGAgtaagaaggagagagagagctggagaaagagagagggaggagctgaATTAACAGGACGTCGTGTGTGAGTACGCAAAACACACACGGACACGAGTGTAGAAACCGTGCATTCTCCCTCATGAGGCTGAAACGAATAAAGAAGGAAGAAACCACTAGGAATGAACGATTCGCTGCAGTTGCATAGCTGGTTCTGAAAGATGGCAGTGGTACAGAGGATCTTTAATTCCACCCAGCCCTTCTCCATGTCCACAAACCAGCCTAAACTCAAGGTCCACAGCTGCCATGCTTCCAGCCCCGAGCCTCAGTCTCCTGTCACCTCTGGAAAGGACGATAAACAGTACGAGCTGACGGATTATTCCAACTACTTTTTGAAGGTCATCTCTCATGGAACAGCCAAGCATGTAGGCACAGGACCTCTGGGCACCGAGAAGCCCTCCATCATCGCCCAAGCAGAGTGTGAATCTCAGGACTCGCAGGAATTCTGTCCCAACAGCAGaCATAAAAATGTGTACAGCAACTTCAGGGCAGCCCTCCCCTTACCCCAAGGCTCGGTCTCTCACCGCCAGCCTAGGAAAAAACGACGGAAGAGACAGCGGCGGAGGGTTTCACAGAGGGAGGGCCAacagagggatggagggagcgagagagtgagagagagaagactcACTAGAGTGCCACAACAGGACAGCGGAGAGCTTGGAGAATGTAGCTACctcagcagcaacagcagcagtgcAATTAGCACAGAAAGTCTGTCTGTGCAGGAGACAGCGGAGCCATCCTACTCCTCTCACCCAGGCCTCATTAGCACTCCGCTATCTTCCAAACCCTGGGAGTGCCTTTTCATTCCCCCACATGGCCTGGTATCCTATGGCCAAGAGAGCGAGTGCTCGCTGGACCCCGACTCGCCGCTTATCAGTGAAGCCGAATGCAGCCTGGCACTTGTAGGCCTCAGGAACAACGTTTCACAGGCCGAGTGCTCCTTTGCCTCGGCGTTTGCCAAACAGATGGTCAGAGACGTGAGGGACAGACAAGAAGAAGAGGATGGAGAGGAAGAGACAGTAGAGAGCGACACAAATGAAGGCATCCTCTTTAAAGAGGAACTACAGCCACAGGACTATGAATATCGAGAGGGAAGGGATTACGAGCTCTGTGATTTACTAAAGCAAGGCTCGTTCGGAGTCGTCTACAGCATCAGAGACAAATCCAGCGGCTTTGTGTGCGCTGCCAAAAAGGTGCCGTTAGAACGTTTCAGAAGTGAGGAGGTGGGCTCGTGGAGTGCCCTCCAGTCTCCTCACGTGGTGGAATTTTTTGGATTTGTCCGAGAGGGTCAATCCGTCATCTTGTTCATGGATCTCAAACCTGGCTCTCTGGGGCAGTTGTTGGCAGAAAGGGGTCGCCTGCCCGAGGATCTCTCCCTGCACTACATGTGTCAGGTCCTGGGGGCACTAGAGCACCTGCACAAGAGACGCATCCTACACCTGGATGTCAAAGTGGATAATGTGTTGTTGTCCGAGGATGGGAAAAACACATTCTTGTGTGACTTTGGCGAGTCAGAGCGACTAGACCTATATGGATTCAGTCCTTTTCAAGctctgaAGGGGACGGAGACTCACATGGCTCCTGAGGTGGCACGTGGAGAGAAGCGTTGTGCCAAGGTGGATGTGTGGAGCAGCTGCTGCATGCTATTGCACATGCTCAACGGCTGCCAGCCATGGACACGCTACTATTCCCGCCCTCTCTACCTCAAAATAGCTGAAGAGCCGCCACCTCTGAGAGAGATACCTCCCAACTGCAGCCCTCATACTGCTGATGTCATCAAACGGGGACTGCAGAGAGAGCCGAGCCGAAGAGCCTCAGCCAAGGATCTCAGAGTTCAAACAGTTAAAGCACTTAAACAACTGGGAGGTCTTCGGAGCCCAGCCAGGGGAGGAGCCTATCAAAAGCCATTTGGGAAGCCAGAAAGGTGTGTGCCCAGCCCCTTCTCCGATAGCTCTGTGCAGCAGTGGATGGGCCCAGGGCAAGAGTGGAGAGAGCAGGCTGGACTGAGAGCTGAGCCAAAGTGCCATAGACAACAAGTGGAAAAAGTGGATGCTGTGAAGgaagagaatgacagagaggaagagattgtGCTGAGAAAGGAAAGTTACCTTTCTCCATCTTCACCACTCTACTTTCATTTTTCACCCCCCGAGTCCTACAAACCCACAGAGCAAGAGCTTCGCAAACTCGAGAGGGAATTTTTCCTGAGCAGTCTGTCTCAGCCGCACTCGGCCGAGCTGCAGGAGCAACTTCTTTCCTGCCTGGGTAGTGACTGCCTTTCTAGCAGAGAGCCAGGAGACAaaaagGACTCTGGCCGCTGGTCACTTGGCCCCGGGGACGACCTCAGCTCAGGtgtattttcctacaacagccaATCGGATGGCCAGAGCTTCAGTATGGATTGGCTTGGCCCCGTCCACCAGCCCCCACCTCGCTGCTTTGAGGGAGTGGATGTTTGCATCAGGGACTTCAATGGACGATGCCTCCGTATCCGTGAAACCCGCCGTGTAAAAGTGGGTCACATCGCTATAGGAATCAGTGATCAGATCTCAGAGAGTGTGTTCAGTCTGCAGAGTGAGGACGGTTCTCTGGTGCCCCACGATAAGCAAGTACAGGAAGCTGGCCTCTTCCTGCGCTGTGTCCCCGCCCCTGACCCCGCCCATGTCCCACGGCACAGTCAAGGCTCCTGCTGCAACATGCCATGGAGCTGGAGGATCAAGGACGGGAGGCTGGAGACCAGGGACTGATGTCTTTATTATTTCCTCTGCTGTCTATCATTTTTAAATCTCACTTTTATTATCTCACTGCGTGAAAACTTCTCCCATCTTCTCTCAGTTCAACTTAATTGCTCCCATCTTTCCATTGATCCGCCATGTTTTTTATTCACCTGCTGTATTATTTCACGTCTGCTCAACTGTGCCAGTGTGTTTTGGAATGATTTTATCCACCTCTTCCAGTATTGCAGGAATGtattgattttaaatttttaatgtgaaatgtCTTAATGTTTAAATATCTCTTTTACTGATGCCATGatacatttacaaatgaatGTTTATACATGCTAGGAATTGCAACTCATAGACAAGCATCTCATCACTGTCCATCAAAGACATTACATATAATTTCATTTCTGATCAGGCAGACCAGAGTCATTTGTATTTCATCATATAATATATTATCTGCTGTGCATTATATTTACTTCCTGCCACAATGTGTATCACTGTACAACGATCTGTACAACAATAAACCCTATGATATATCA

Function

GO:

id name namespace
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04466 MAP3K14, NIK; mitogen-activated protein kinase kinase kinase 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243310 lncRNA upstream 50853 5003626 ~ 5014516 (+) True gosr2
TU243292 lncRNA upstream 67573 4936564 ~ 4997796 (+) True G205436
TU243290 lncRNA upstream 110011 4894540 ~ 4955358 (+) False G205436
XR_004579387.1 lncRNA upstream 139687 4923914 ~ 4925682 (+) True LOC117598842
TU243164 lncRNA upstream 354060 4706245 ~ 4711309 (+) False retreg3
TU243315 lncRNA downstream 1617 5079987 ~ 5081204 (+) True G205454
TU244073 lncRNA downstream 551088 5629458 ~ 5629659 (+) True G206157
TU244143 lncRNA downstream 657000 5735370 ~ 5735607 (+) True G206212
TU244156 lncRNA downstream 676482 5754852 ~ 5756939 (+) True G206221
XR_004579445.1 lncRNA downstream 790492 5868862 ~ 5869806 (+) True LOC117599005
XM_026916876.2 mRNA upstream 54332 5003548 ~ 5011037 (+) False gosr2
XM_026916160.2 mRNA upstream 74118 4982026 ~ 4991251 (+) True wnt9b
XM_026917196.2 mRNA upstream 90539 4970822 ~ 4974830 (+) True LOC113528572
XM_026916710.2 mRNA upstream 294873 4737041 ~ 4770496 (+) True fmnl1a
XM_026916473.2 mRNA upstream 343901 4712873 ~ 4721468 (+) False psmc3ip
XM_026917205.2 mRNA downstream 10893 5089263 ~ 5091817 (+) True rps11
XM_026916179.2 mRNA downstream 17952 5096322 ~ 5103874 (+) True hrob
XM_026916897.2 mRNA downstream 30051 5108421 ~ 5626980 (+) False asic2
XM_034310193.1 mRNA downstream 36809 5115179 ~ 5626980 (+) False asic2
XM_026916896.2 mRNA downstream 416587 5494957 ~ 5626980 (+) True asic2
XR_003402913.2 other upstream 343901 4712873 ~ 4721468 (+) True psmc3ip
TU242671 other upstream 1079085 3966758 ~ 3986284 (+) False limd2
XR_003402967.1 other downstream 11828 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 12150 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 12462 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 12878 5091248 ~ 5091332 (+) True LOC113528649
TU244082 other downstream 579242 5657612 ~ 5660848 (+) True G206166

Expression Profile