RNA id: XM_026916730.2


Basic Information

Item Value
RNA id XM_026916730.2
length 1627
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC113528274
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16400754 ~ 16494702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGACTGCATCCGTGTATCTGTGCTGTCAAAGCTCCaggacagctagctagctgcacGGTAGGAACAGGCACATTGGTGATAGAAAGCGGATGAATGCTGAAATAACTGTAGCGTTTGATACCGAATTATATAATTGCACTCGCCACTTATGAGTAAAAAGTGTATGTGGAACTTCGTTAAGCATTTCCAAGACACAGTTGAAAACAGGCGTAAGTGAACATTTTACGAGCAGGGTGAGAACAGGTACGAAGGATCCACCGAGGAGACTAAGACAAGATCTTCAGAAGAGCGTTGCGCTGGTGGTCGGTGCGCGCGACTTTCCCTGAAGTCGAAGCTTGACGCGCAATGTCGAGGAAAAAGGCTCCAAAGGGCAAAAGCGGCAGCGCGAGCCCCTCTACCACCAAAGACAACAATAACAGATCGGGCAAAAGTGGCCTGGTGGCTGGAGTTCAGGCTAATGGAGTGGTGCATCCGAGCCGAGCATCTGTCAGCAGTAGTGAATTTTACGACGTCGCGTTCAAGGTGATGCTGGTAGGCGACTCAGGAGTAGGGAAGACCTGTCTGCTAGTGCGCTTCAAGGATGGAGCATTTCTGGCTGGCAGCTTTATTTCTACTGTGGGCATTGACTTCAGGAACAAAGTGCTCGACATTGATGGGGTCAAGGTCAAACTGCAGATCTGGGATACTGCAGGACAGGAGCGCTTTCGCAGTGTTACACATGCCTACTATCGTGATGCCCATGccctgctgctgctgtatgaTGTCACCAACAAAGCATCTTTTGACAACATTCGGGCCTGGCTGACAGAAATCCATGAGTATGCTCAGCAAGATGTGGTTTTAATGATACTGGGCAATAAGGCTGATGCCTCTCACGACAGAACAGTAAGGCGAGAGGAAGGTGAGAGACTAGCTAAGGAGTTTGGGGTGCCTTTCATGGAGACAAGTGCCCGATCTGGCCTTAATGTGGACCTGGCCTTCACTGCCATAGCCAAAGAGCTGAAGCACAGGTCCATGAAGGGTGTTGGTGAGCCCAAGTTTAAATTGCATGAGTATGTCAACAAGGAAATGAAGACCACAGGGTGCTGCAGGACCTAAAATCACaagtgaatgtgtttgtgtgggtacATACACATGTGGTTATCataaatgtgtttacatttgCCCAGCTGagggatttttttgtgtgtgtgtgtatacggtGGACATATGGTTCTTATGACTATGCTTAAATTTGTCCATCTGCATCACGTGTTTGTGTGAGCGTATGTACCCTGAACACATGATAAATGGCAGGCAGTGAACAGTGTGCAGCATTTCATTAGCTTTGTTATACCATGTGTGgattttttattgatttcatGCCTGGGAGAGCCTTGAAGGGCTCATGGGTACTATATTTTCTTCATACTATTTGTGGAGAAGCACAATTCTGCCCTTTTCTATCTGCAAAAGCACCACATACTCTAATCAGTGTAATGGGAAGAAGTGCACTCTTTAGAGAAACAGTCAAGCAATGCTACAAACATGTAGATATAAAATGTTCAATCTTTTTGGTCCAGTAAAGAAATTAGGGGCCACATGCTACctgcaataataaatatattaataaatgaattcatatt

Function

GO: NA

KEGG:

id description
K07913 RAB26; Ras-related protein Rab-26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251138 lncRNA upstream 246504 16153616 ~ 16154250 (+) True G212030
TU251137 lncRNA upstream 247201 16152255 ~ 16153553 (+) True G212029
TU251141 lncRNA upstream 252212 16146379 ~ 16148542 (+) True G212033
TU250953 lncRNA upstream 560754 15839772 ~ 15840000 (+) True G211856
TU250935 lncRNA upstream 694753 15705749 ~ 15706001 (+) True G211838
TU251286 lncRNA downstream 81721 16576423 ~ 16616678 (+) True G212172
TU251291 lncRNA downstream 83712 16578414 ~ 16584331 (+) True G212174
XR_004579398.1 lncRNA downstream 117495 16612197 ~ 16613446 (+) True LOC117598846
TU251289 lncRNA downstream 117551 16612253 ~ 16613345 (+) False LOC117598846
XR_003402954.2 lncRNA downstream 152659 16647361 ~ 16649303 (+) True LOC113528544
XM_026916193.2 mRNA upstream 254428 16140442 ~ 16146326 (+) True LOC113527983
XM_026916859.2 mRNA upstream 573833 15822782 ~ 15826921 (+) True LOC113528350
XM_026916860.2 mRNA upstream 573833 15822782 ~ 15826921 (+) False LOC113528350
XM_034310047.1 mRNA upstream 737065 15617283 ~ 15663689 (+) True rnf213a
XM_026916011.2 mRNA upstream 834191 15548504 ~ 15566563 (+) True LOC113527870
XM_026916133.2 mRNA downstream 50939 16545641 ~ 16549914 (+) False LOC113527936
XM_026916132.2 mRNA downstream 50940 16545642 ~ 16549914 (+) False LOC113527936
XM_026916134.2 mRNA downstream 50947 16545649 ~ 16549914 (+) False LOC113527936
XM_034309887.1 mRNA downstream 50951 16545653 ~ 16549914 (+) False LOC113527936
XM_026916129.2 mRNA downstream 50981 16545683 ~ 16549914 (+) True LOC113527936
TU251142 other upstream 255370 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 431995 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 587423 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 2907904 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 4212165 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 592589 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 1689317 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 2420024 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 2420024 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2649372 19144074 ~ 19145240 (+) True G213491

Expression Profile