RNA id: XM_026916735.2


Basic Information

Item Value
RNA id XM_026916735.2
length 4050
RNA type mRNA
GC content 0.46
exon number 19
gene id sez6l2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8937563 ~ 8953319 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCACCGACGAGCGCATCGAGCTCTACTTGTGCTGtgcattgctgtgtgtgtttggcgcACGCCATGGCTGATTACAGCGTGTTGACTTACCGCGTCTCGGCTGCTCACTCGctttttttctctcgtACTTCACCATGGTGTCCACAGTTCTTGCTGTGACGCTGTGTGTCACACTCATGCACATTCATGTGACTACAGGTGCAGCCTTTCTCACTCCTGATTCTGAGGCTCCTCCCACTATGACTTCTGATCCCCGCCCCCTGGGTGAGTTGATCCATGCTGCGCTGATGAGTAAGAAGTATCTTGGCCAGTCTTCTGGCAACATAGGCACAACCACTAACCCGACCCAGGCTGTCCCGTCTGTTGAACCTGCCTTCACAGTAATGTCACCAGGTGTTCTCACTACTGCCATGACCTCTTCAACTGCCCCCCAGTCTGGCCAATCAGGAGGGAAGGGTGGTGTAACATCACCACCCGCAGAGGAGGAGACCACAACAACTTTGATCACCaccacaacaataacaacagttCACACACCagTGCAGTGTAATGCTAGTCTGACAGGTATGGAGGGGATAGTGGAGTCTCCAGACCAGCTCTCCTCATCAATTCCATTTTCCCAACTGGAATGCACCTACAGCATCACTGTATATCCTGGATATGGGGTGGAAATACAGGTGAAGAAGGTGAACTTGTCCAAGGAGGAGTCTCTAACCATTCTGGGAATGGATGGCTCAGTACCTGAGCTTTTAGCCAATGAGACAATGATCACTGAAGGTCAGGTGATACGCAGTACGACAAATCAGGTGCAGATTCACTACCGAAGCCTGAAGCAGACCAATCATGGCATTTTTACCCTTCACTACCAAGCGTTCCTCCTCTCCTGcccattccctctctctcctgagGGGGGCGgagtcactgtgactgacattCACCCTGGAGGTCAGGCTCACTTTCACTGTGACCCCAGCTttcaggtcaaaggtcacgaAGTTGCCACCTGTCTGAACTCCACCCGACCCCACTGGAGCAACCCTGAGCCTCAGTGTATGGCTGTGTCTTGTGGAGGATGGATCAGAAATGCTACGGTGGGCCGTATCCTCTCTCCTACCGTTCCCTCCAGCAGTAACCTTAGCAATAGCAACTTGAGCTGCCATTGGTTGCTTGAGGCCAAGGAGGGCCATCGACTTCACCTCCATTTTGAAAGGATGGCTTTGGATGAAGACAACGATAAGCTGATTGTTCGCAGTGGGAATAATTCCAACACACCCCTTCTTTTCGACTCGGATCTGGACGATGTTCCGGAGCGTGGGATAGTGAGTGAAGGATCATCTCTGTATCTGGAGCTAACAGCTGACTCTTCCTCCATCCCTCTGCTGATGGCACTTCGCTATGAGGCTTTTGATGGCGAGCACTGTTACGAACCCTATGTCCCTCATGGGAATTTTAGCAGCAGTGATATCACCTTCCCTATTGGTACTACGGTAACCTTCTCCTGCTCTCCTGGATTTGTCATGGAGCAAGGGTCTGGGGTCATGGAGTGTGTCGACCCCAGTGACCCCCACTGGAATGAGAGTGAGCCTGTGTGCAAAGCTCTATGTGGCGGGGAGCTGACAGATGCGTCAGGAACCGTGCTGTCTCCTGATTGGCCACAGAGCTACTCCAAGGGGCAGGACTGTGTGTGGCAGATCCACGTCAGTGAGGACAAGCGGATTGAACTGGATGTgcaaattTTGAACATTCGTCACAATGACATTCTCACCATATTTGATGGGCATGACCTCATGTCCCATGTGATTGGACAGTATTTGGGGTCACGGGAAAGGTTCCGGGTCGTGTCTGGTGGCTCAGAGGTCACCATTCAGTTTCAAAGTGACCCAGATGATTCCACCTTCATTCTGAGCCAAGGCTTCCTGATTCACTACCGAGAGGTGGAGCCTAATGACACATGCCCCACTTTGCCACCAATTGAATTTGGCTGGAGTAGCTCTTCCCATGTCTCACTTGTGAGGGGCAGTGTAATAACCTATCAGTGTCAACCTGGCTATGACATTGTAGGTTCTGACATCATTACCTGTCAGTGGGATCTGTCCTGGAGCAACAGCCCACCTACTTGTGTGAAAATCCAGCAGTGTCCTGACCCAGGGGAGGTGGTGAATGGAGCACGCTCAGTGCACCCAGAGTTAGGCTTTGCAGTTGGAACAGTGGTGCGCTTTACCTGTAATCAAGGTTACCAGCTGGAGGGCCCTAGTCAGATCTCCTGCCATGGCAGAGACACTGGCATGCCAAAATGGAGTGACCGTAGCCCCAAATGTGTCtTGAAGTATGATCCATGCCCAAATCCTGGTGTGCCAGACAACGGTTACCAAACTCTTTATAAACACAGTTACCAAGCAGGGGAGACTCTGCGCTTCTTCTGTTACGAAGGCTATGAGCTGATTGGAGAGGTCATCATCAACTGTGTCCCAGGGCACCCCTCTCAGTGGAACAGCCCACCCCCTTTTTGCAAAGTGGCCTATGAGGAGCTGTTGGAAGATCACAAACTGGAAGTCTCTCAGTCATTAGAAGCCTCCCACCAAATGCTGAGTGAGAACATTGCATTGGCCATCATCCTGCCAATCATCCTGGTCATCCTTCTGATTGCTGGAATATACATGTACTACACTAAtgtgTGTAGGTTGCAGTGGAAGCCACTATTTTGGAagtccctctcacacacccattccTATAGTCCCATCACAGTGGAGTCTGACTTCAATAACCCACTGTATGAAGCAGGGGACACAAGGGAGTATGAGGTGTCCATCTGAAGGAGCATACAAGACAGAAATCAGAAATTAAGgatggaaagaaaatgaatggatgatattatgtctctctctcacttgcaGTCCTTTAACCAATAtacctttcctttctttttcactctaTTTTCAGTATCTCTCTTGCTCGTTGCTGACTCATGTAACAGTGtgcgtgtgtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgagaGAGAAGAGACTGTGAGACTGTTAAAGAGTTAAAAGGGTTAAGCATGAGCTTATGGTTTCTCACTATCAGATATGTTTTCTAATATTTAGGTTGGTGCCTTAGGGACGAAAAAGAGATCAAGGTAGTGACAGTGAGGACGAGGCTCAAAAGAGTATGAGGCTAAGAGTGAGTCAGCAACTTgggggggaaagagagagagagagagagagagagagagaactttttCACATGGGGAGTGAATCATATAAAAGACAggagcacacacaaacacacataacaacacatgaacaaaaacatgttaCCACTCTATTCATACtcctctgtacacacacatacacacacaaaaatcacaatatattgaatgtaaatattttgattGAATATTATGTATACAAAACTGATGTATACGAAACTGATCCAGTGCCAAAATAATGACATCCCATAATGTGACGTCGAAAACATGTTTCACAGGTTGCCATAGTATTTCCtacatttataatgtaataatgacCAATAATGCCAGCGTTTCATAATGTTCTTTGCTGTTTCTTAAAAATCTCTTTCTGCTTAATGTTGAATGACTATGGGATTAAAGGGGTGGAATGTCTTTCATGCTTAGGGCACGCAAcgattgtatattttattgcttCAGCTTAGAATTCATTCAAACAATTATCCTTACTATCATTGTTTATCAGAGTTGATGTTGTTGCATATGCACTatgttcacaaaaaaatatgaagaaaaaaatcagctgctTGCTGTGATGCAGTATCAAACTGAACTGCtttttataatgttatttttcaattGAATCATGGTTTGTTGTTACTATTAAGCGGTGAGTTTTTGTCTCTTCCACTGTGCCATACTTGGAGTCTAGCTGTGGACTCTGTTGCATTGAAGTATTACTAATATTCAATtgttcatattatttattaatcaacaTAATATATTGTCATGAAGGCATAATTTATTTGCTAAGatttaagaataaataaagGTCTCTTGGATGGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246391 lncRNA downstream 23004 8871976 ~ 8914559 (-) True G208063
TU246390 lncRNA downstream 64061 8860563 ~ 8873502 (-) True G208062
TU246332 lncRNA downstream 288200 8574635 ~ 8649363 (-) True G208016
TU246164 lncRNA downstream 402851 8534503 ~ 8534712 (-) True G207895
TU246126 lncRNA downstream 444522 8492815 ~ 8493041 (-) True G207860
TU246437 lncRNA upstream 2123 8955442 ~ 8955655 (-) True G208097
TU246438 lncRNA upstream 2547 8955866 ~ 8956397 (-) True G208098
TU246439 lncRNA upstream 3942 8957261 ~ 8958211 (-) True G208099
TU246517 lncRNA upstream 53681 9007000 ~ 9007259 (-) True G208145
TU246529 lncRNA upstream 71442 9024761 ~ 9024983 (-) True G208151
XM_026917257.2 mRNA downstream 1023 8929611 ~ 8936540 (-) True kctd13
XM_026916344.2 mRNA downstream 9652 8921509 ~ 8927911 (-) True hirip3
XM_026916561.2 mRNA downstream 102827 8811408 ~ 8834736 (-) False taok2a
XM_026916560.2 mRNA downstream 102827 8811408 ~ 8834736 (-) True taok2a
XM_026917151.2 mRNA downstream 128582 8805242 ~ 8808981 (-) True cdipt
XM_026916899.2 mRNA upstream 19968 8973287 ~ 8983377 (-) True pitpnbl
XM_026916526.2 mRNA upstream 69227 9022546 ~ 9032032 (-) True lat
XM_026916527.2 mRNA upstream 69227 9022546 ~ 9032027 (-) False lat
XM_026916525.2 mRNA upstream 79525 9032844 ~ 9044136 (-) False spns1
XM_026916523.2 mRNA upstream 79525 9032844 ~ 9044136 (-) True spns1
TU246334 other downstream 224245 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 652971 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 669925 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1506491 7425730 ~ 7431072 (-) False natd1
trnav-cac_10 other upstream 234201 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 243177 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 243177 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 456485 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 456485 9409804 ~ 9419584 (-) False prr15la

Expression Profile