RNA id: XM_026916755.2


Basic Information

Item Value
RNA id XM_026916755.2
length 7640
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC113528286
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10809454 ~ 10846584 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCCCACTCTGAACATGGCAGCGACAGCAAGCAGGAAAGCGAGATAGATAGAgcgaaagtgtgtgtatgagtgtgtgcatttgtgtgcgtgtgtgtctgtgagagagagtgagagagagagagagagcgagagagagagagagagaggagtctgCCGTTGACAGGGAATATCTGCTGCCATTTTTCGCCTTGCAGGAGGCGCTTGCAGGAGCAGGATCTGGGCAGAGCACTGTAGCAGGAGTGCCCTAGCTGAAGCCATGCAGTCCTTTAGAGAGCGGGGTGGTTTCCAGGGCAACCAGCGCTGCTACCAGCAGGAACCCCATGAATTATCTCGCCTTGAGAATTACAGACATCACAGCCAAACCGGACAGGGCTATGAGGTGCACTCTCTTTCTGCTGCAGGGATGCCAACAGCAGGAACAAGCTCTAAGGACTGTTATGGGCAGCAGCCCTACCCCAGCTATGGCAGCAGTTCAGCTCAGAGCAAGAAACCATACAGAGGAGGAAAAGCTCCAAGCCAGCACCTACAGGCTGGCTACAGTACCCACATGAATTCTGGATATTCATCCCAGTACATGAGTGAGGGACACTTGCAGCAGAAGTGGGATGAGTCTGGTCAGATATCTCAGTATGAACAGGACATTGTGGGTCATCTTGAGCCTGGGGCCAGTAGCTCATCCCAGTATCTTGAGCAGAACATGCTAGCCATTTCTCAAAGCCAGTGCCATCTCCCCTCCCAACCCTCTGCCCCTGTATATACTAGCCCCCATCAGCAAGGTCATCCTCCCAATCCTACTCCATCTCCACTAATGTACCCACAGAGCCACATTCAGTTCCCTCAACACTCCCAACCACCCTCCTCCACCTCATCATCTTACATGGAGAAATGCAATCCAATTCCCCATGGCTACAAAAGTGGCTACGGAATGCCACCTAATGCCCAGTATTCAAGGCAGATGGGTAACCACAGTAGTCTGAAGCAGAGTGGCTATCGGCCACAGAATAATTATGGCTACCAACAGCCTTCTTCAAGAGCTGGATTTGAACAGCAGGCTTCCTTGCAGGGAATGTCAGGTACGCCAGAGAGTCTTCAAAAATTTCCACATTATAATCAGCCCCAACAAAACTATTGTATAACAGATATTTCTGTGAGGTCACCTGAACAGTATTACCAGAACTGCAGTCCAAGCTCCAGCCACTCACCTGCAAGGTCTGTGGGCAGGTCACCCTCATATAGCTCCACACCTTCTCCCTTAATGCCCAATCCTGACACATTCCAGTATGGCCAACCAGTCAACCCTTCCTCCTCTTCTGCGAATCTGCAAGATCCTAACATGTTAATGCCTCCACACACCCACCCATCCCCAAGTGTTAATCACCAATCTCAGAGCTACTCCAGTTCTATGAAGGACCGTTTTTCTGAGAAGCTGTTTTCTAACCCGAGCTTGTGGAGCCTTAATGCTCTGACATCTCAGGTAGAGAACATCTCCAATAATGTCCAACAATTACTTCTGTCAGAAGCTCTTATGGCCAACAAAAAAGGTAACAAGAGAAACCAGCTGAAAAAGGGAGAGGAATATAGGGGCCACTTAAAAGCAATGGAGGACACTTCATGTCCTGATAGCCAACATGGTCCTCTCCCCAGTGATTCTTATGGCACCCCAAGATCTATGCCAGCTGATCTACTAGAAGTAGGATACTCCAGCAGCACCGAAGATCAGATGGAACGTAACTACTACTACTTTGGTCAGGGCAAAGGTCCAATACACGCCTCAGCACATTCTCAGTTGAGTCTGGACACAGTTTCTACCTGCTCCATAAACTCAACAGATGACATGTCTGTCAGGTCAGGTGACTCAGATCGGAGTATACAGGGTGCAGCCTCTGAAGATAATCTTAGCTGTGACCCTAGGGTGCAGAGAGTGCCATTTGGAGAGGAGCAGCACAGTTCTCTCAGAAGCATTAGAAATGAAAGGTCCCCTATTAGCGTAACAGCCCCAAGTCCTATGAAGCAGGAGAATAATTCTCCAATAGGTGTAAAGCAGTCTGAGAGTACTCAGAAGGAGAATTTTGAGGAATCTGCCTGGACAGAGAGGATGACTGATGAAAAAGAAATTGGGAAAATGAAGCTGCCCACAGAACATAAGTGCAAAGGAGAAGTTTTTGAGGCAACTGAGAAACGACAGGAGTGGATAGAGGATGAGAAGTGCCCCTCCTTTTTTCATAAGTTAAATAAAGAAGTGTCAAATGAAAGCTATTCTTATGAAACGGAAGACAACATCTATcagaaactgaaaaacaaatatgagACAGAGGAAGGAGACTTTGCTGGGAAGTGTTGTGACACCAGCTGTAAAAGAAATGAAGATTcagaaatgaaatctgaaatgttcAAATCAGAATCACAGAATAATGGTGAGGACCCTATAACAGCATCACCAGCTATTTCAAAAGATGTGCCTGAGTCCAATCTATATTTGCCTAGGAAAGAGGAAAGCTCAGAGACACCTCATCTCACCTCTGAGTGTGAATCTTCAGAGGAAAGACAGTTAACCTCTGAAAGACAGAATGATGTCTTTGAGGAGCAACAATCTGCCCTATCCTATTCAGCCTCTGAAGTAAGAGAGAAAGGAAGTCTGATATCCAATGAAGATGtgattaataataaagcaaaactAGAAAAGTCCTCTACAGAAGCCTGTAATAATCAAGGGGAGACAGCAAGTGGACCACTTTGTGTGGTCAACACCGAAATAGCTGAGACCCCTGCCCAGGACATAGCCCACAGAAGCAGTGAAAGGACATCAGTCACATATGACATTGCACCTCAGTCTCACCCTGTCAGGAGTGGCTTCTCAGCTCTTAATGAGAAGACAACACCTCAGAATCAGGCGAGGGATCACATTGATCACAGTGATGCAAAGGTGCTGGAGCCTGACTCCCCTCAGTTGCCAGGCAAGTCAATAATATCTTCTGCACCATCTTGGGCTGATACTCCACCATCTCCACAGAAAGGTGATGAGGATGTAGAACCAGGTATAAGCTGTCCCAGTGCAACAAAACCAGAGCCCATGGCCCCTTCTACACATCCAAGACTATTGGGCAGAAAGCATGCACGGGGTAGGAGAAgattaattcattcaaatgCAGGGATGAGGAATGTGGAGAGGGATGGGGCTCCACCATCTACTCAAAAGCCCAGCATGCTCTCAAGTAACAGTGCCATGTTCTCTGATCAGATGGAGGCTGTTCAGCTGGATATTAGCAGTCAAACGCCAAAACTTCTGGCAGAAGGTTTACCATCCCGTATGTGTACTCGCTCTTTAGGGTCACAAAGTACCCCAAAAGTTTGTTCTcaagagagaagaaaaccaGGTCCAAAGCCCAGTTCAAAACCTGGTCCAAAACCAGGACCAAAACCTGGCACAAAGCCTGGCCTAAAACCTAGTTCAAAGCCTGTTTTAAAACCAGGTTCAAAACAGGGCCTAAAACCTGGACCAAAACCAGGCCCAAAGCCATGTCCCAAACCTGGTGCAAAGCCTTCTTTGAAGCCTGGTCCAAAACAGAACTCAAAACCTGGGCCAAAACCAGGCCCAAAACCTGGGGCTGTGCCAAGTGTAAAACCTGGTATAAAGCCTGGCCCAAAGCCTGCTGCTATACCTGCTCTTAAGCCTGGTCCAAAACCTGGCTTAAAGCCTACAGAAGGAGTAACTCCTAAGGGCCCTGGTCGGCCAAAAGGCCTCACCTCTAGAATCAAAtcaatgaaatatgaaaataatatagATGCTATTACAGAGCATATTGAAGATACAAGCTGCATGAGTGAAACCCCTGAACATCAAGAAAATACTGCAGTCAGTCTGGAAACTGTTGTTGGTACTACATTGCACACTTCAATAGACAGCACAATAGGTTCCACTTTGGACACTGCTTTGGATGCTTCTTTTGTAAATTCTGGAGCAAAAGATCAAAACTCCATGGTATTAAGATCTCGGAAGCAAACACGGGAAAAGATAACAGAAgacaaggagaaagagagagacacatcaACTGAAACATCAGCAATAAAACCCACTGAGTCACATATACAGAAAGTGGCTGCTGCTCAGCCCTGTGAGAACCTAACATCAACCTTAAAATCACCCAACCATGAGGATATCTGCACAGATTCACTTAGTCAACTTAATGAGCAGATTGTGTCAGTTTCAATCAAGAGAAAATCTAGTTTACAAGCCCCAGACCCagtcaagaaaaagaaaggactAAAAGTTagtcaaacaaaaatacaggaaCTTCAGCCACAGGAGTTAGTACTAGAAGCGCAAGGTTCAAAGGGAAGGCGAAAGCGAGGCCATAAATTAGAACCATCTGCTTGCAGCTCTCTGACCAAAGATAACTTTCCCTTGGAAGATATCAGTGACACACCCTGTGTGCCTCCTCAGTGTCCTACTAAAACAAAATATCTGCCTCCTAGGAAAGGCAGAGGACTTAAATATGAAGCAATGGTTCAGAAAATCACATCCCCGGCATCTAAAAAACAGCCTCTAAATATCCAACCAGATGTTGTGCTAGAAGAATTAGCACCAAAGCCATCCCCAGAACTACAGGTagcagaaaaaagaagaaagacagTAAACACTACAATGGTAACACCAGAGGAGGGTGAGAGTACAGTAAGCACTGAGGAAACTCCAGACACAGCATGTATCCAAACTCCTCGAAAGAAGCGCAGAAAGTGGGCCACAGTGGAGAGCACTGACACACCAGATATAGCATTGGAGACTGGGAGCCTCATTATCAACACACCAAGGCTAGCCAAACAGAGAGCCATTAAAAATAACCATGAGATGCATCTGAAGCAAcggaagaagagaagaaaaggcaCTGAGCTTGCAAAGAGTGTGCCAATTGTGGAAACTCATGAGCAGAGTGATGTGTTCACCTCTCCTCCAGCACCTccaacatcaccaccaccaacttcttctctctttccaaACACAGAAGAGAAGACACAGGGTGAGCAGCTTTCAGTAGAAATAGGCTCAATGGTAATTAAACCGAAAAGAGGCAGGCGACCATCACttaaaaagaaacaggaagacTTCAGTCAACAAATAGGAAATGAAGGTCAAAAGGTCAAAAAAAAGCCTGGACCTAAAAAAAAGATCCAACAGAATAACAACAGTACCATTAAGGTCACTGTAAAGGGACTCAAGcctaaaattaaaagcaaaaatgaatgTATTCCTACTGTGAAAGGTATAttgacagattttttaaaaatacaagaaaatgaAGGCAAGCATTCTTTCAAACCATATGTACACATTGACAGCTCCAAAAAGCTTGCTTCCCTTTgcacaattataaataaacctgaggAAGAGCATCTGCTCGACCAGACAAGAAAAAAGAACTTGGTAAAAAACAAGACAATTCCAAACTCATCAATGATGCTCCAAGGCCCCTTAGTTAACAGAAGCCTAACTGATAGGTGTCTAATATGCTGCCTGTGTGGAAAGCCAGCAAATTACAGGGAGCTTGGGGATTTGTGTGGCCCATACTACCCTGAAAATACCATACCACGGAAAACACTGTCTTTAATATACCATGAAGACTTCAGgcaacacagagacagagagcaagccAAGGTGGCCATGTGCAGTGCTGAGCAAATCAATGACatgaaaagagagggagaaaaaaacttACTTCAAGAGGGGACAAGTGCAGGAGATTGCAGGCAGGTGATGAGAGAAAGAAGGGCACAACTTAGAAGTCGTGTTGGCTTGCGGGCGAGGTTCAAAAGACTGCAGATGTTGCAAGGGAGAGCTGGTGGAGGAGTTCCCCCTGCTGGTGAGGAGGGCTCTTACTCTTTTCTGCAGAGGTTACAGCTGGAGGCTGAGGTTAATGAGCACTGGGCACATGAGTCCTGCGCTGTCTGGACCAGTGGTGTGATCCTAATCGCAGGCAAACTTTACGGACTGAAGGAGGCTGCACGGGAATCTACAATCACAAAATGCTCTAAGTGCCAGAGTGAGGGAGCCTCCATCTGCTGCAGCTGGAAGAACTGTGTTCATAAATACCACTATGTCTGCGCCAAAGAGATAGgCTGCATATTCGATGAAGACACTTTCTCGATAAAATGTCCAAAACACCAGGTAAGTGTCTGAGCTCGTTCTAGAACATAAAAGCGTGTCTTTGATCTTAGAAACATGCCTATTATGCCGTGTACATCAGTGGCCTTGCTGAAACATTTGCTGACCTCCCTAACAAAGGGAGTGAATGGAGGTGTAAAGCGCAGCCGCTCATCAGCTCCATCTCCCAGGGCAACAGACAAGTCTAGCAAGGAGCTCACCCTTATTGATGAGCCATTTCTCCAGCAAAAGTCATGCTTGCACAGTTGATGCTAATTAGATGCTCAATGATCTTGGCTTTCTAACATCTATTATCCCCCACAAGACTAAATTAGCATTAGGGATACTGTCAGATTTTTAGGGCTGAATGTGTCGCTGAAGATGCCTTTCTTTGAGGATGAACTAAATAAGCTCAAATTGTACAGCAATTGTACCAGTGACTCAGACTTCTCTGATCTCATCTAGATGATTTGACTACAACTCAGTGCTACAAACTGCCTACAGGTTTTCGGCTTGCATTGCAGTGATAAGCGAGTACGGAGCAAGAGACTGTGCAGGGGTAGAGCAGTAGTTGACAACCAGTGAGAGAAAACCTGGCAACAGATCAAAGCACCCTCCCATCTCCTTTCCCTTCCTACGTCAAAAGGACAAAAAGGatgggagggagagagtgaggagtTCAGAACAAGCTGAAAGCACATTGACTCAGGGATCTAAAGGCTTTAGGTCTCAGCCATGCCAATTTGCTGTTTTAATGAAAGCAAGCAGTAGATATTCCACCCCCATGCAGGTCTCCCAGGAAatgtcttcctctttttcttttactctgtGCCTACACATGCACAGACTCCTTTTCTAGTGGGGGCTTTCGTGGCAACATGAGCAAGGCCCTGGATTACTGCACCATCCGTTTAGACCGGGCCAAAAGCAGCAGAGGCAACAAGGAAAACAAGAGCAGGGCTATGGCTTGCACCTTTTCAAAGAGAATCAAGGGCTGTTCTTATATCATGGCTCGATATAGAGGGAGATAGATGTTGGCCTTTAGCCAGAGAGATGGGTGGATGAGTGCGGAGAGGATGCAAGAGCGAGAAAAGCAGAGGCAGTGTTGGTGCAGGaggtggaagaagaagaaatattgTGCAAAAAATGCTCTGTGCCAGCACAATTAGGGGGCAGTCCTGCTGGGTGGTTGAGGAAGAGCTGGCTGGCTTCGTTGGCCCACTTGGTGCAGCGTTCACATCAGCACAGTGGCTACTGCCTCAGCATGGGCAATTAGAGAGCTCACACCAGGCTGCTAATGCAGagccagatacacacacacagacccgcacacacacacacacacacacacacacacactatagtcTCTTGCCCACTCATAGCCACACTACACAGTATGCACTATGAATATTTCCTATGCATGAAGAAATTAGATAGGGTGACATACGTTACTGTAATACCTTTTCTGCTTGCATATTTTGATTCTACTTGTCCATTTTGTT

Function

GO: NA

KEGG:

id description
K19749 RAI1; retinoic acid-induced protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247335 lncRNA upstream 27995 10372415 ~ 10781459 (+) False G208781
TU247330 lncRNA upstream 391573 10372415 ~ 10417881 (+) False G208781
TU247337 lncRNA upstream 391573 10412984 ~ 10417881 (+) False G208781
TU247342 lncRNA upstream 467230 10341908 ~ 10342224 (+) True G208783
TU247238 lncRNA upstream 582951 10225583 ~ 10226503 (+) True G208701
TU247490 lncRNA downstream 9790 10855155 ~ 10857015 (+) True G208916
TU247664 lncRNA downstream 86694 10932059 ~ 10932428 (+) True G209067
TU247667 lncRNA downstream 97890 10943255 ~ 10947541 (+) True G209069
XR_004579343.1 lncRNA downstream 126356 10971721 ~ 10982090 (+) True LOC117598771
XR_004579342.1 lncRNA downstream 126356 10971721 ~ 10982078 (+) False LOC117598771
XM_026917195.2 mRNA upstream 11276 10748146 ~ 10798178 (+) True fam20ca
XM_026916762.2 mRNA upstream 325248 10475354 ~ 10484206 (+) True bri3
XM_026916197.2 mRNA upstream 360769 10426059 ~ 10448685 (+) True lmtk2
XM_026916198.2 mRNA upstream 360769 10426059 ~ 10448685 (+) False lmtk2
XM_026916301.2 mRNA upstream 467739 10298887 ~ 10341715 (+) True helz
XM_026916957.2 mRNA downstream 54274 10899639 ~ 10909805 (+) True drc3
XM_034310142.1 mRNA downstream 55671 10901036 ~ 10909807 (+) False drc3
XM_026917293.2 mRNA downstream 66092 10911457 ~ 10919978 (+) True gid4
XM_026916801.2 mRNA downstream 91938 10937303 ~ 10940999 (+) True noxo1a
XM_026916187.2 mRNA downstream 117610 10962975 ~ 10966262 (+) True LOC113527977
TU247340 other upstream 391573 10349402 ~ 10417881 (+) False G208781
TU247338 other upstream 391573 10372415 ~ 10417881 (+) False G208781
TU247339 other upstream 391573 10412984 ~ 10417881 (+) True G208781
XR_003402918.2 other upstream 829500 9944306 ~ 9979954 (+) False rapgefl1
TU246534 other upstream 1746139 9061565 ~ 9063315 (+) False nupr1b
XR_003402977.1 other downstream 691682 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 721754 11567119 ~ 11577823 (+) False luc7l3
XR_003402925.2 other downstream 1313341 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 2630463 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4967877 15813242 ~ 15813331 (+) True trnar-ucu_8

Expression Profile