RNA id: XM_034310084.1


Basic Information

Item Value
RNA id XM_034310084.1
length 2615
RNA type mRNA
GC content 0.50
exon number 4
gene id cnp
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6307670 ~ 6312808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTGCCCGCGCCCGCGCTCCCGCGTCGTGTGCGATAGCGTGTtcaagaagcagcagcagcagcagcagcagcccgCGGCTTAGTGCTGTGTTTCCCGTGAACTCTGCTCGGGCAGGCGGGGCGGTTCAGCGCAGGACGTGAGAGAGACGCGGAAAAGCTGCAGCTGGTTTTCGGCGCCCCGACGGCCACTGACCggagctcctacacacacatacacacaggCCACTGTTGAGGAATGGAAGCTGATCAGAATCAGGAAGTGCCGGAGGCAGTTGCTCAGACCCATGTGGCAGAGACAGAATTGCCCGCTCCTGAGCAGCTCAAATCTGAGGAGGTGAATGAGACACCAGAGAAGCTAGCGGTGGAAGATTCTAAACCAGAGATACAGTCCACAGAACAAACACCTGAGGTGGAGCCTGCCAAGGATAATGCATCCCCTGAGACAGCCACAGAGCCAGAGAAATTGCCTGAGAAGGAGGAAGTAGCAGAAGTAGTCCTGGAGAAAGCTGTCGAGGTGGAAAAATCTGCTGAGGAACCAGCTGAGGTCGAGAAAACGCCAGAGATCGAAGCGGTGGAGAAACATATAACTGAACCAGTGGAGCCAGAGAAGAAAGCAGAAACTGAACAAAAGGCAAATCCAGAAGAAGATGGGAAAGCAGAGCCCGCTGCATCAGAGCCTCCTGCCGCGAATGAAGCTGCACCAACCGAGCTGGTAAACGAGGCAGAGAAAGCAGAAGCCAAACCAACTGAGGAGGAAAAGCCTTCCGAGGCTCAAGCAGTTCAAGCTGAGCCCCCAAAAGAGGTGGAGGCACAACCAAAAGAACCAGCGCTCCCTTTGTTCTATGGCTGGTTCCTGATCTCTGAAGTTGAAGAGAAGATAAAGTGTTCCACAATGGAGTTCCTGAAGACGCTGGACACTCTGGAGGCCTTCAAGAAACATATCAGTGAATTTACTGGGGACGCAGACAAGGAGGTGGATCTGGAGCAGTACTTCCAGACCAAAGCACCGCTCCACTGCACTACTGAGTTCTGTGACTATGGAAAGGCAGAGGGAGGAAAAGAATATGCTGAACAGCAGGTGGTTAAAGATTCCTGTGGAACAGGAACAGAACTATCTGTTGTTGGTCTCATAGTGACTCCTCGCACATTCGGTGCCCGTGTGTCACTTACCCCTGAGCAGCTGTTGCTGTGGCCCACAGGAGCTGATAAATTGGGGATTCCTCCAGCTGACCTCCCCGGTGTCGAGGCCCTTCCAGTGGGCAGCCGCGCTCATGTGACCCTAGGCTGCGCAGCAGGCGTGGAGGCTGTTCAAACCGGTATAGACCTGCTGGAGATCCTGATCCTCCAGCAAGGAGAAGAGAAAGCAGTCACAGTGGAAGAGCTGGAGCTGGGCACGCTCTCATACATGGGCCAGGGTCGCTGGTATCTGGCTCTAAGGGAGCCGGTCACATGCGATGCCACATTCTCGAGCTTCTCTGAAGAGCAGCGTCCCACTGAACCAGCCAAGAAGGAGGGcggggagaaaaagaagaagctaAAGTGCTCCATTCTGtgaggagatagagagagatgatgagggGTGACGGTGTTCTAGGGCTGAGACtggttttgtgtatgtgtggctgtgtgtgaatgtttttcagCTTTAGTGCTGGGTGAGGGCGATTGGTACGTACTACACCACCTCACCATTCCAAAGCGACCTCTCTTAGCAGGTGCCTTTTCCTTTCGCTTGGCAGCACAAGCGTCAAGGCCTTAGAATCTGCCTTACGATCAAGAATCACCGTGCTGTAGCTCGTAGTTCACTCTGTGCAAGGTGCTCGCTCACTCTGCGTTACTCCTGTTTCCTCCTGCACTGCAGCATTCGGTCTTCCCTGCACTTAATGTAATTGATTGCTTATCTAAATGTATTGATCTATTAGGTTGTATGAGCAGCAGCAGTCCGAGTTCCTGTTTTTCAGGCAGACTGAAATGATTTGATACCTTTACATATTTTGAAATTAGACAGCCTGTAATTGCCAAATTAATGATTTGTTAGGTTTGGTACGAAGTGTGTATGACGGTTGgccttggtgtgtgtgtttgtagtgtgtcagaacttttttcctctctctttgttCTCAGATGTAATAACATTTGTGATGAATTTCACTCAGATTGCATGCTGTTTGTGTCCAGCTTTACAGTCACACCCAACTCCTATCCATCTTTAATGTGTACAGTCGCAGACCTGTTAACAGTTTCTCCTTAGCTACTAATTTTCTCTCTGTATTCAGTATAGATGGCTGTTTGCCGGTGGGAGTGAAACAGTGTCTTGCCTAACTCTCGTGTTCACACAGCGTTGCAGTCACTTCATGGCAGATGAGTTCCTGTTAACTTGTATTATCCTTTTCTTTAGCTTTTGAGCTAGTCTCACTTTTGCTCTTTCCAGCTGTGGTCACTTTTGACAAGCTGCACTCAGAATACTGTGACTGGCCACTGCCCTGATGCCTTCGTCTCTAATGGGGTGGTATAAGGCAGAAGCCGTGCTTATGTAGGCCTCACATGTCGAGGCGCTGTATTTTTGcacttattctttttttgtacACTTAATAAACAATTTGCTTGGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244662 lncRNA downstream 103474 6203312 ~ 6204196 (-) True G206628
XR_003402891.2 lncRNA downstream 117744 6187474 ~ 6189926 (-) True LOC113527891
XR_003402949.2 lncRNA downstream 354166 5952798 ~ 5953504 (-) True LOC113528476
TU244141 lncRNA downstream 579990 5721634 ~ 5727680 (-) True G206210
TU244080 lncRNA downstream 675751 5631715 ~ 5631919 (-) True G206164
TU244981 lncRNA upstream 333289 6646097 ~ 6647814 (-) False stat5a
TU245006 lncRNA upstream 512088 6824896 ~ 6825760 (-) True G206924
TU245005 lncRNA upstream 513560 6826368 ~ 6828146 (-) True G206923
TU245188 lncRNA upstream 789440 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 863724 7176532 ~ 7176755 (-) True G207198
XM_026916749.2 mRNA downstream 4189 6277216 ~ 6303481 (-) False aclya
XM_026916748.2 mRNA downstream 4189 6277216 ~ 6303481 (-) True aclya
XM_026916256.2 mRNA downstream 56184 6248782 ~ 6251486 (-) True hsp70.3
XM_026916518.2 mRNA downstream 68982 6223470 ~ 6238688 (-) True atp2a1
XM_034309895.1 mRNA downstream 147498 6149355 ~ 6160172 (-) True nudt9
XM_026917254.2 mRNA upstream 2491 6315299 ~ 6323127 (-) True ttc25
XM_026917253.2 mRNA upstream 10394 6323202 ~ 6341231 (-) True dnajc7
XM_026917250.2 mRNA upstream 37856 6350664 ~ 6443282 (-) False znf385c
XM_026917249.2 mRNA upstream 37856 6350664 ~ 6443282 (-) False znf385c
XM_026917251.2 mRNA upstream 37856 6350664 ~ 6443264 (-) True znf385c
TU244626 other downstream 112674 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 346620 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 346620 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 356673 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 466193 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 958098 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 959447 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 960249 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 961498 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 1005795 7318603 ~ 7321962 (-) True G207231

Expression Profile