RNA id: XM_034309853.1


Basic Information

Item Value
RNA id XM_034309853.1
length 2770
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC113528291
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21047261 ~ 21082014 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaggattctTGCAGTGATGTGAGAGGCGTGTGTTAGGAAGGCTCTCGTctagagagaaggaaagagggaaagacagagggGATAGAGAAGGGGAAGGGGAGGACAGAGGGAACTGTGTGACAGATGAGTGGAGGATAGAGgatagtgcagtgtgtgtgtgtgtgtgtgcgggaaTAATGAGCCGGAGAGCAGCTTGGTGCTAATAGAGATGTCCGACTCGGACTGAAGTTCCCAGCATGCATTGCTCTAGGGGATTTTGCATACGTGGCTCGggataaaaacacacatgtgCTGAAATGTCATGCGTTCCAGTGTGATAGTCCTGCAGAAGCCATCGCTGCCAGCCTGAACCAGATCTGCTCCAGGATTATGGCGGAGAAGAAGAACGGTAAAACGGCGAGCGGCTCGTCCCTGTCCAGCACTGACGTCCCACTACAAGtAGACTTTCCCACACCAAAGACTGAACTACAGCAGAGCTTCCATGTTCTCTACCTGGGAATGACCTCTGTGTCTCGTCCCatagggatGGACATTATAAATGGAGCGATTGACAGTCTGCTGTCGTCCACGGGGAAGGATGACTGGactgcagtgctgctgaatgtgGAAGATGCGACAGTCAGCGTTATCAAAGAGAAGgaggaggaggaggaagtgctGGTGGAGTGCCGCGTGCGTTTCCTGTCGTTTATGGGTGTCGGCCGTGATGTGCACACATTCGCCTTCATCATGGACACGGGCAACCAGCACTTCCAGTGTCACGTGTTCTGGTGTGAGCCCAACGCAGGGAGTGTGTCCGAAGCTGTGCAGTCTGCCTGTGTGcTACGCTATCAGAAATGCCTGGTCTCACACTCTTCCTCTCAGAAGTCCTCCACCTGTTCCTCTCCATCTTCTTCAGACTCCATGACTCGCCGTGTAACTACCAGCGTGAAGCGCAGCGTCCAGTCCATCATAGACACTCTGAAAAAGAAGCCCACCCCTGAGCTGCCCCACCAATGACGGTGCAGCTTGGCTACGATCACCGGCAGGACATGTACATAAAAACAATGAACTCTGTACGGCCAAGGAGaaacaaatgatcaaaaacCAGGAAGTGGAAAGGAAGAGAAGACCTTATGGGTGAAACTTCACCTGTAGCTCTTTGAACTTTGACCGTCACTAGGCGCTCTCCCTGAAGCATGCCTtggacaaaaaacacacaattacacTCATTTTTAAGCCAACAGACACACAACTACAATGTGTTTGAGCTGTGTATTACTCCGTTACCATCATGCTGATGTCAGTGAAGACTCATTTTCATGTCTGAtgtcataatcatgttaaactTTACACCATTGTGGTGCACCATTACACCATTTCGGCTGTTCTGAACATCTAGTGTGTTAATGCGAGCCTCGGTACAAAATGATGCTGTAATTTACACCCAATAGGTTGAAAAATACTTAAACGTAATGTGGTTGCGTGGGGGGAAATGGTGAGTCCACCAGGGTCAGTTAGAGAACTGCTTGCTCATGATTAATGTATCCTATTTTTGGGGCAGTATGTCGCTCCATGGTGTCAGACCCACTCTTCAACAACCCCCTAAAATTCtcctttgagaaaaaaaaaactatatgtTCCATTAATGTAGCAcgtgattttctttatttttatttatgagatCTGTCTCAAACTGCACTTCTTTCAGAGCCCCCTACTGGCAAAGTCTAGTGTAGTGTTTGTCCCGTTTGTGTTGCTTTAGTTCAGAATTGTTTGATACAGTCCTGATCTGATTTGGTGCGTGTCTGAATTATAGTAATTACAAGATGACAACTTGACAAATGGACACACTGATAGCAAGAAAATAGCTAAATGATGTGTTATAAGATAGTAAGCTACATTCTTCACCTGCACTACACTATTGGTGATGTGGTTTATAAACTGGAGATCACAGATGTATAGAGTTACACATTGAGTTAAATCCTTTGACCAACATGTGAATGATAAGTCAGTCAGAAACTCGGAATTTCTAAAATTCCGACATTACCATGCTATTAATTCTTCTACCAGAACATCCTTTCCAATAAGTCCTCATGTAGCGTCTCTATCGGATTTTCAATATGACGTTAGTGTAAAAGTAACATACCTTTCTATAAACTTGTGTGTAACTACTACTGTACACCTAACAACTAAGCTAAGCAACAATGGGCAACTAAGCTaatgtaaaaatgataaatattactGTGTAACCTTTTGTTTAAGGTTTGTTTCATATGGGCGTGTAGCGACTTGTGGGTGTGGCATGTCcagctgtttttaaattatgataAGAAATGTCAAAAATACTATATACAGCCTACTGCATACTTCATTCactgttatttttctttaaaatgtgttttaatattataataaaaccCAAGACAAGATGAAACTGCAGTTACCATTTCTCCATTTCGGCACCACTGTTGAATGAGAACTATAAGCAGTTAAGAACTGAAGTTCGGATTGGTCTGAAGATGTTACCAGCGCTAATTATTTACTGTGTCGCAACCAACGTGCATAAAATGGAAAGATTTTCTAACCAAAACTCCCTGCAACCAAGGCTCAGTGTGGCAAGCGTATGCAGGCAATGAACGTTTGACTCTCACTTTGTTGatatgaatgaaaaagaaacgcGTCTTACAGTCTGGAAAATATAGGAAGCAAAGTGTAACTCACCCGTGTCCCTCACTCACCATATTAATGTCCATAACGTCCCTGTGCTAATAAAGGCAtttcaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254148 lncRNA upstream 37829 21011774 ~ 21024087 (+) True nudt6
TU254040 lncRNA upstream 135238 20908828 ~ 20926678 (+) True G214548
XR_004579420.1 lncRNA upstream 209322 20845141 ~ 20852594 (+) True LOC117598998
TU254014 lncRNA upstream 216569 20845147 ~ 20845347 (+) False LOC117598998
TU253833 lncRNA upstream 590152 20471529 ~ 20471764 (+) True G214369
TU254190 lncRNA downstream 62806 21144820 ~ 21158088 (+) False G214694
TU254189 lncRNA downstream 75268 21157282 ~ 21158088 (+) True G214694
TU254221 lncRNA downstream 80886 21162900 ~ 21163304 (+) True G214723
TU254231 lncRNA downstream 103252 21185266 ~ 21186303 (+) True G214731
TU254255 lncRNA downstream 116528 21198542 ~ 21244785 (+) True G214753
XM_026917161.2 mRNA upstream 17609 21035260 ~ 21044307 (+) True dele1
XM_034310040.1 mRNA upstream 48068 21012210 ~ 21013848 (+) False nudt6
XM_026916633.2 mRNA upstream 282684 20746708 ~ 20779232 (+) True ankrd50
XM_026917123.1 mRNA upstream 616970 20439441 ~ 20444946 (+) False LOC113528524
XM_026916808.2 mRNA downstream 99399 21181413 ~ 21184850 (+) True tlr1
XM_026916778.2 mRNA downstream 124445 21206459 ~ 21226848 (+) True f8
XM_026916148.2 mRNA downstream 206466 21288480 ~ 21293794 (+) True LOC113527948
XM_026916510.2 mRNA downstream 219629 21301643 ~ 21328754 (+) True sec24b
XM_034309781.1 mRNA downstream 259175 21341189 ~ 21348917 (+) False hopx
XR_004579430.1 other upstream 985508 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 1080536 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 1108630 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 1151751 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 1748698 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 258402 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 259233 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 259233 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 259233 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 259552 21341566 ~ 21348829 (+) False hopx

Expression Profile