RNA id: XR_004579400.1


Basic Information

Item Value
RNA id XR_004579400.1
length 5053
RNA type misc_RNA
GC content 0.42
exon number 12
gene id retsat
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5940862 ~ 5950997 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTGTTCAGACAGAGGGCGGTCCAGCAGGTGAAAAGTGAGTGATAGGGATTGAGAGTGTCACAGCAGCTTTTAGGGAGCAAGCAGTGTTCTCAGAAATGTGGGTCTCTATAGGATTAATCGTTGCAGTGTTGTTTGTCGCATTATTCCTCAAATATGTGTTTGGTACTTCCGGTCCGAATCCTTTTGATATCGACACGCGCGAGCCGCCCAAACCAGTGCAGCTggataaaaaggagagaaacaAAGTGTTGAAACAAGGCTTTTTGGCCAGCAGAGTCCCCCAGGACCTTGACGCCATTGTGATTGGAAGTGGTATTGGTGGGCTGAGCATCGCTGTTCTCCTTGCCAAGGTTGGAAAGAAGGTCCTGGTGCTGGAACAACATGATCGTGCTGGAGGATGTTGTCACACCTTCTCTGAGAAAGGCTTTGAGTTTGACATTGGGATCCACTACATTGGTAATTTAGAGGAGAATGGGATGTTCTGCTGCATAGTGGATCAGCTGACCAATGGGCAGCTACAATGGGAACCACTGGAAAACCCCTATGACCGTGTGGTCCTGGGTCCGCCGGAGAACCGGCGCGTCTACCCCATTTACAGTGGCGAAAACCGTTTCACCCAGGAGCTGAAGAAGTGCTTCCCAGGAGAGGAGAAGGCCATTGATGAGTTCATGAGACTGGTTAAGAAATGTGGCCATAACGTGTGGATGGTTGTGCTGCTGAAGTTGCTCCCGTCTCCAGTGGCGAAGTTCCTGGCTTATACAGGGCTCGCTAATCGCCTGTCCTACTTCTTCTCCTATGGCTCACGCAGCCTGGCTGAGGTGGTGAACAGCCTCACAGAGAATAAAGATCTCAGGGCTGTGCTCTGCTACATCTTCGGTACCTACGgAAACCCCCCAAAAGAAGCCAGTTTCTCCATGCACAGTTTGCTGCTATGCCACTACCTGCCCGGTGCCTGGTACCCTAAAGGAGGTGCCAGTCAGATCGCCTATAACATGATCCCCATCATCGAGAAGGCAGGAGGAGCCGTGCTTGTCAGAGCATCAGTCAACCGCATCCTGCTCAACGCCGCCAACGAGGCTATAGGGGTGAGTGTGATGAAGGGACAAGAGGAGGTCCATGTGCACGCTCCCATCGTGATCTCAAATGCAGGAATCTTCAACACCTACCAGCAGCTACTGCCTAAAGAGGTGCAGATGAAGGCAGCGATCCAGAAGCAGCTGAGTATGCTGAAGCATGGAGAAGCCGGCCTCAGCATCTTCCTGGGTCTGAACGGGACAAAAGACGAGCTGGGCCTCAAAGCAGACAACTACTGGCTCTTCTGCGAGAACAATCTAGATGAGCTCTTAAACGGCTACGTtacaggagagagggaggagtcAGTGAAAAGCCTACCTCTGCTTTTTGTTGCCTCACCATCTGCCAAAGATCCCACCTGGGAGCAGAGAATGCCAgGTAAGTCCACTATGACTGTGGTCAGCTTCGCCCCCTACTCATGGTTTGAGGAATGGAAAGACGAGAAAGTCAAGAACAGAGGGGTTGACTATAAAGAACTTAAGGCGACCATCATCAACTCTGTTCTGGAAGTGGTAACTCAGAATTTCCCCAAGATCAAAGACAGGatAGAGTACATGGACGCGGGCACTCCCATCACCAATCAGCACTATTTAGCAGCTTCTAAAGGAGAGATCTATGGAGCTGACCACGGCACTTCCCGCTTTACTGCCGAAGTCTGTGCCACCATCAGACCACAAACGCCCATCAAAAACCTCTTCCtcacagGTCAAGACTTAGTTTCATGTGGTTTTGCGGGGGCCATCGCAGGAGCTATGGTCTGCGGCTCTGCTATTCTCAACCGCAACCTTTACATGGATGTCAGCGTCCTTAGAAAGAAACTGAAACATGCCAACTCTAAGAAAGTCcagtaaccatggcaacatgtACTGATCCCCAGCTGATTCCAGTACCAGCAAGAAGGCACATTGCAAACTGTTTAAGCAAGTAAATTAATGGAATTATTATCACATAATCCTCAGTAAATTAATATCTGCTCTGATAATCcctgttttttaataatatgtgACTACACTAATGCGTTTATACAGAattttataagtaaataaaataaaaaaatatattttattttataaaataaatataaatatatataatatattttattttatatataaattgtaataaGATGATGGAAAGTTTATTTCAGTATTGCAGACTACTGTTTTGATGAAGTGTTGATGCTTGAATCAAGAGTACCATGTCACTGATGACTTTTgaaagtttttgaaaaaaactgtaaaacatttactatAGATTTTCCGCACCTATTCGATCAGTGAACGTGATAAATCAGAAGATCAAACTGAGCACATCTAGAGTTTTTCAGCTTTTAGCGTGCATAGGATTTAACAGGAAATTGACAAGATGTTGTATGTCACCCTGCTCTCTGTTTACAGTGTTTCTGTCCATCACTAAATTTAACAATCTTAATTAGAAAGAAATGGAAGCAATGGTGTCAAAcactgaatgtatttttttctcaactGGACCTCCTAGATCGCAGCCAGACAAGGTACAAGTCTGGCATTCCATGAAACTGCCTCCAAAAAACTGCCTCTTTGTAATTGCTTAGAATTTCTTTTAACATCTAGTAGCTAACTTTAATACTTGTGGATCACCAAATATTTATCTCTACTCTTGCTGACATGGGTATCAGGTCTGGATGTAGATTTTATCTACAGGATGATCTTATCTTGTAACATGGAGAGCTTCGGTTCTTTTTACCTTACAGCCTCACTAGAGGAGTTCCCCAAGGCTCGGTTTTCAGTTCTCTTTTATTCACCTCTAAATCTAAACTAAATCAGTGGGCTCAGTGATCAGATCCCATGACTACAACTTTACTTCTCTTTTCATTCATCCTCTGCCCAAGTCTCACAGTAGATATCTGACTGACTTGCTGGATAGAAACCCATCATTTGAAACCAAAAGttgaagaaaaaacagacaaacaaataatcaCTATCAAACCCCTCATAGTCCATCCAACATGCCCAACTTAGAAACTTGGTGTGGAGCTCGACTTCTCTGATCACATTACATATCACACTACCAGATCCCTCCGATGTCTTCttcacaacagcagaagaataCAAACTCTACTGATTTCAGAATCTGCTCAATTTCTCATACAAGACTTGGCTATTGCAGCTGTACTAAGAATCTTCAGAATGCTTCTGCTCACACACTTTATAACCTCCTGAAGTCTCTCATGTGACCCCCGTGTGGAGGTCTCTCTACAAATCTGTTGCAGCATGACTCAAATTCAGAGCTCTTGCCCTTGGGCTCTTGTGGcccaacagaaaagcatttacCCTGTTGTCAGGAGATCGCAAGTtgccaacaatgccacagctatCCGTGGCctggagccaagggagcaaaattagCCGTGCTGTCTtgatgggagggatggcatactctctctccactgtcaatcacagtgaaacCAGTCTATCTCATGTAAAGCACATTCCTTCAAGtctgttatgctgccctgtgacgtagcatgagcagcagtctgAGAAGATGAGATTGGCTGGCTTCCTGTgttttggaggaagcatgtgttattCTTCACCCTCTCTTGATGCTAGCTGTCTTGTAATAGGGGAGAGCTTggtagtgggtgggaattgtcAGGTCGCTAAATTTGGGAAGAACATGGGGGATATTCAAAACTTTTCTCAGATCTTCAACATGATTTTCAAAACTTCCTCAGATCTTCAACCACTCCAAGCTCAGATCTTCATCCGCAATACAGATCTTCAGACGTTCCTCAGATCTTCAACTGCTCCAAGCTCTTTAGTGATGGAATCATCTTATAATATTTACGATTGCAGTTTGTTATTCACTGCactatcatttatcatttatgcacTTGCTTATGTTTATACTTAGCTTTTACTTTTTAGTTATCAACTGAACTATCttcaactctgaccaggatcaAGCAGTTACTaagaatgaacgaatgaattaGTTATTGACTGAACCAATCTAGTATATGTATGAACCAGCATTCATTTCTGTACAGTGTGGTTTTTGAATCCTTACAGTGtctctaaagactgttgtgcatTTAGCAGTTCTTTTTCTCAGTCGCTCTGAGAAAAATAAGCATCtacaaaatgactaaatgtaaaatatcaataaattataatataactgCTGCTGTTTGATTTAAGTCAACTGTGAGTTCTCGAGTTGTGAATGCTTTTAGTGAgacacttaattttttttcccagcactttattttagtaattttagTTAAGTGATTATGATTATATCCTCAAATGTTTTGCAGCATGACTATCATCATTAtggttgtgtgagtgtgtagacgAAGTCTGTGACACTTCTGGCATGTTGCACCTGAATTTGATTTCTTAATTTTGTCAATGTTTggtgtttgaaaaaaaattcaaaaacccATCAAATCAGGAGTTGTTAAGGAAGGCCGAACTTGTGACCATTCCTCCTAAGGTGCTGTAATATTTTAGTAATTCTTTTCAGGTATATTAAAGGATACCTTTATggtttaaaatcattttcaggTATTTGGTATTAATGCATATTACACTAATCACTATATACTGTAAAGCCCAGAACAAAAGAATGGGTTCTCTAAATATAGCTTTATTGCCACAAATGTAttgattatttctgttttgtgtttgtgtttgtaattcTTTATTTTGTAGACTAAATAACTAACTGCTGCCTTGATGATTTTGAAGActaaataattatattcatattctagTATCTAAACTTGaggaaaatgctttaaattttttaattcaaactGAATATGTAGGACTTGGAGtgtattttaaagtaatttgttATATCTCATGTACTCCTGTTTGACAGGACTGTTTAACTGATATAACTCTGAAATCAGACGTCTTTCTGGCTGTGATGATGTGTACTAAATGCACACTCAGGCAATAAACCAGCTTTGCTGTTGTCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244141 lncRNA downstream 213182 5721634 ~ 5727680 (-) True G206210
TU244080 lncRNA downstream 308943 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 655957 5280730 ~ 5284905 (-) True LOC113528378
TU243538 lncRNA downstream 848940 5089336 ~ 5091922 (-) False G205633
XR_003402949.2 lncRNA upstream 1801 5952798 ~ 5953504 (-) True LOC113528476
XR_003402891.2 lncRNA upstream 236477 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 252315 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 322819 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 695100 6646097 ~ 6647814 (-) False stat5a
XM_026916974.2 mRNA downstream 2431 5934040 ~ 5938431 (-) True cdk21
XM_034309809.1 mRNA downstream 2448 5934040 ~ 5938414 (-) False cdk21
XM_034309880.1 mRNA downstream 8986 5897560 ~ 5931876 (-) False svilc
XM_026916322.2 mRNA downstream 9644 5897560 ~ 5931218 (-) False svilc
XM_026916319.2 mRNA downstream 9644 5897560 ~ 5931218 (-) False svilc
XM_026917153.2 mRNA upstream 4749 5955746 ~ 5961050 (-) False LOC113528542
XM_026917240.2 mRNA upstream 11691 5962688 ~ 5978373 (-) True nmt1a
XM_026916955.2 mRNA upstream 30203 5981200 ~ 6017987 (-) True plcd3a
XM_026917015.2 mRNA upstream 75282 6026279 ~ 6105884 (-) False arhgap23a
XM_026917014.2 mRNA upstream 75282 6026279 ~ 6091130 (-) False arhgap23a
TU244224 other downstream 99385 5841137 ~ 5841477 (-) True G206282
TU244177 other downstream 184129 5754767 ~ 5756733 (-) True G206236
TU243535 other downstream 848940 5089336 ~ 5091922 (-) False G205633
XR_004579368.1 other downstream 1205976 4722417 ~ 4734886 (-) False mlx
TU243400 other downstream 1206057 4728094 ~ 4734805 (-) False mlx
XR_004579347.1 other upstream 2736 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other upstream 2736 5953733 ~ 5961050 (-) True LOC113528542
TU244626 other upstream 175913 6126910 ~ 6194996 (-) True G206604
trnac-gca_16 other upstream 1319909 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 1321258 7272255 ~ 7272326 (-) True trnac-gca_17

Expression Profile