RNA id: XM_026916776.2


Basic Information

Item Value
RNA id XM_026916776.2
length 3838
RNA type mRNA
GC content 0.43
exon number 13
gene id ccdc47
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4120854 ~ 4131475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGTGCAAAGCTGGTCATGATAGACCCTGGTAGTCTGGCAAGTAAGTGCTAACTGCGACTACAGGGCCcagctttaatattttttctattaaagGAGGAAATATCGTAGGCTGAGTGAGCGATGAGGCGCTGTCTCTTGCTGCTCCCTgcgctcctgctgctgctggctctGCCCGACACCAGGGGGCGCTACAACGACGACTTCGATGACGGAGAGGACCTGGCCGAGTTCGACGACAACGACTTCGCCGAGTTTGAGGACGTTGCCGAGGAGCCGGCGGTCGAGGCGGAGAAAGAGCCTCCGACCAGACCGGCGCCTTCGTCTGCTCCCGAGGAGGACGACGAGGATGAAGCCACGGTGGAGAACGAGGACGGGCAAGACGAGTTTGAGGATGGAGATGGACAGGATCAGGACATTTACAGCATATATGACAACGAGGAGTTTGAGGGCCACGATACGACCAGCCCCTCTAACAAAGACACACTGATCTACAGAGAGGTCCCAGCACATCTGCAGAACAGCTGGGAGAGCTACTACATGGAGATCCTGATGGTGACGGGCCTCCTGGCTTACATCATGAATTACATTATTGGCAAGAACAAGAACAGCAGGCTGGCTCAGGCCTGGTTTAACTCGCACAGAGAGCTGCTGGAGAGCAACTTCGCCCTCGTTGGTGATGACGGGACGAGTAAGGAGCCCACCAGCACGGGGAAGCTGAACCAGGAGAACGAGCACATCTACAACCTGTGGTGCTCAGGACGTGTCTGCTGCGAGGGCATGCTCATTCAGCTCAAGTTTCTTAAAAGACAGGATCTGCTGAATGTGCTGGCCAGGATGATGAGACCTGCTTGTGATCAAGTGCAAATCAAAGTAACTCTGAACGACGAGGACATGGACACGTTTGTGTTTGCAGTGGGAAACCGGAAGGCCATGGCGCGCATGCAGAAGGAGATGCAGGACCTGAGTGAGTTCTGCGGGGACAAGCCCAAGTCGGGGGCAAAGTACAGCCTCCCTGACTCTCTGGCCATCCTATCAGAGATGGGCGAGGTCACGGATGGAGTGATGGACAGCAAGaTGGTACATTACATCACCAACCATGCCGACAAAATAGAGTCCATCCATTTCTCGGACCAATTTTCTGGTCCAAAAGTTATGCAAGAGGAGGGTCAGCCCTTAAAGCTCCCTGAGACCAAGAAAACGCTGCTGTTTACATTTAACGTGCCTGGAATGGGTAACACTTCTCCCAAAGACATGGACAGCCTGCTGCCACTCATGAACATGGTGATCTACAGCATCGACAAAGTCAAGAAGTTACGCCTCAACAGAGAggggaagATGAAGGCAGAACGGAACCGCGCCCGTGTTGAGGAGAACTTCCTGAAGCAGACTCACGCTCAGAGGCAGGAAGCTGCACAGACACGCcgggaggagaagaagagagcgGAGAAAGAGAGGATCATGAACGAGGAGGACCCTGAGAGACAGCGTCGCCTAGAGGAGGCTGCTCAGCGTcgagagcaaaagaaaatggagaagaagcagatgaagatgaagcaaATTAAAGTGAAAGCCatgtaaaaaacacacacacacacacacagcttccaTAGCTGCTGGCATCTGAGAATGTATCCACTGCTTCCATTGATTGCTAATATCCAAACTTGTAACTGTCCGACAGCTGTTCACTATCAGGtcgtgttttatttaaagaaaatgtttcgAATTTGATTCTTTGCTGCTCCACCGCTGTCCAGTCGTGACCGAGTGAGTCACTGGtttattaatgatgtgtgtgaatgtttccAGTCATTGAGAGAGTTAGTCCTGGGGTCgtcactctttctctcaaagCGCTGGTGTAGATGCGAAAGCTGCACCTCCTAGTCTTTTAAAGACCAAATGTAGTGGAAAGTGAAATCTGATGTAGCTCCTGATTAATTGGAATAAAAACTGGAGTTGAATTTGAGTTTTGCAGTTTGCAAGAGAGCGATCTAAAATCTGAAACTGAATTTCACAATTAAGGGTTGGggatttaatgtttaaaaatcaaaatgaagtGCACATAcaacaatcaatcaataaataaagaaataaaaagcattCGTCCTATTTGGTAATTCACATTTTTAGATTCGCTTTCAAAGTAACGTCCAGGTAGCATCCAGGCAAAAGCAGTCGAACATAAAaatcctttctctttttccagATGAATTCTatcatacttttattttgaatttcaagcatttaatcacacactcataagTGTGAAGTTCAGTTTGAGATTTTAGATTGCTGTGTTACAAACCATCGAATTGAATTTCAGCTGGTAATGATACAAATTCTAACATTCCaattgcatttaaattaaaattgctAATGGCCTGATTCTAACTCCATAAATAAAACCTGCAGCccttagcagaaaaaaaaaacaaaaaaccaaaacactcCTGGTTTAGTAACAGCATCTGAGCAGCCACCTTTAATAAGTACACTTTAATCTGTGAGAGATTATTAGATATAGGATAGAAGCAAATACACTACCTTTAAATCTAGTACATGAAGAGAGATCTTTTATTTAGTCAGAATTTTAACAGCAGTATATATGTGTAGCTTTGTGCcaataatgtgaaaatgatgGGAAAACTTTAAAATTGGTTTATTGAAGCTACTAAACTGCCGGTGAAATATTAGCTTTAGCGTTCaaagtctgttttattttcttgatCCTAATCCAATTTATTATCGAGTGGAAAGAAACAATTCAAATGTTATAAGTTTTAATAATGAGAGATGAATTCTGTTATCCCCAGATTAAATAGATTCCCAATAACCACTTTTAAAAGTACAGTTTGTAAggtttagaaataaaattatacaattattagAGGTCTAGAAACAAAGATggttagaaataaaaaataatgataaagtgATTTGCAATATGACCATGCACTGGATCTGGTCTAGTTGATTGATATCAGGcttctgttaaaatatttctggccctgaaattagcgCCACCCCCATTTTCTCAgctctgctcttttttttttttttttttttcctttttctttcctttttttttttttttaaatacctctTTACTCACAAGAGTTCTAATAAAGGGAATGGGAGGTCTTGATGTTTTGATTTCAATTACAGCCCATCTCTCAGGCTGCAGAAGACTCTAGAAATGACAAACCACtcctttaagtgtgtgtttttgtggagACGTAGAACTGCCGCTTCCCCGGGCCAGTTCTCTCCTGTAGGTCAGTGCGGAACTTCCACATCACCTGAACGCTTCCCTTGATCCTGCATTGAGCTGTGCAGTGTGTAAGGGTTCTTCCATATCACAGGGTGATGTCACTGTAAAACCACGCCTCACCTGTCTCGTCACGATCTTCACACCTCAGAGCTCAGAGCTGTAGTTATCCTGCTTTCACCAGCTGATTTGTTTTTAGCATGAACCGGGTGAGTGAGGAAGCACACGGCGTGTTTTATAATACTGTACGCTTGCAAAATCTGCCAATTCAGCTGTTTTCTAGACAAAagacaatttttctttttattaatgagAAAGGGCTCAGCGTGTCCATGTCATCTTTGACCCACTACAATCAATTTACGTGATTtaatacaagttttttttttttttttgttttttttttttaagatttatattttacGTTTGCGGTTCATCTGTCACATGGACATGTTTGTTAATGCGCATGAGAGGCGCTTCACTTCAGCCTGTTTCTGTACTATTTGTCTTTTTGTCCAAAGAGACACTGagcaaaactgaataaaacatgCACTGAACAATTTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24962 CCDC47; PAT complex subunit CCDC47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242706 lncRNA upstream 13126 4105943 ~ 4107728 (+) True G204912
TU242596 lncRNA upstream 237895 3853496 ~ 3882959 (+) True G204832
TU242626 lncRNA upstream 251111 3864913 ~ 3869743 (+) True G204860
XR_003402906.2 lncRNA upstream 252757 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA upstream 254516 3856054 ~ 3866338 (+) False LOC113528035
TU242762 lncRNA downstream 60262 4191737 ~ 4192099 (+) True G204965
TU243084 lncRNA downstream 224064 4355539 ~ 4356186 (+) True G205242
TU243087 lncRNA downstream 224843 4356318 ~ 4356536 (+) True G205245
TU243092 lncRNA downstream 227930 4359405 ~ 4360374 (+) True G205250
TU243105 lncRNA downstream 262450 4393925 ~ 4394258 (+) True G205263
XM_026916773.2 mRNA upstream 16100 4057751 ~ 4104754 (+) True kcnh6a
XM_026916775.2 mRNA upstream 16100 4057751 ~ 4104754 (+) False kcnh6a
XM_026917237.2 mRNA upstream 76479 4034566 ~ 4044375 (+) True gfap
XM_034310183.1 mRNA upstream 90404 4029809 ~ 4030450 (+) True LOC117598989
XM_026916864.2 mRNA upstream 101461 3990758 ~ 4019393 (+) True map3k3
XM_026916489.2 mRNA downstream 84440 4215915 ~ 4226045 (+) True moto
XM_026916490.2 mRNA downstream 84440 4215915 ~ 4226045 (+) False moto
XM_034310291.1 mRNA downstream 396118 4527593 ~ 4549478 (+) True ezh1
XM_026916627.2 mRNA downstream 495018 4626493 ~ 4670646 (+) True plekhh3
XM_026916628.2 mRNA downstream 495018 4626493 ~ 4670646 (+) False plekhh3
TU242670 other upstream 134570 3966758 ~ 3986284 (+) True limd2
TU242671 other upstream 134570 3966758 ~ 3986284 (+) False limd2
TU242672 other upstream 134570 3966758 ~ 3986284 (+) False limd2
TU242673 other upstream 134570 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other upstream 149604 3971179 ~ 3971250 (+) True trnae-cuc_26
XR_003402913.2 other downstream 581398 4712873 ~ 4721468 (+) True psmc3ip
XR_003402967.1 other downstream 958723 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 959045 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 959357 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 959773 5091248 ~ 5091332 (+) True LOC113528649

Expression Profile