RNA id: XM_026916778.2


Basic Information

Item Value
RNA id XM_026916778.2
length 6333
RNA type mRNA
GC content 0.45
exon number 25
gene id f8
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21206459 ~ 21226848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCCTGACATCATTAGTAACTTAACCTCAACAGGCgtaagtgtgtgcatgtttttttgtgcGAACTCTTGCAATGAAGGCTCTACTGTTCATCCTCTTCCTCGTCAAATGTTTTCCGGATTCGCATGCTGAGAAAAAGATACAGGAGTTCTTCATCGCCGCAGTGGAGACCAGCTGGGACTATCTGAACGCTGGTGGTGTGGATCCAGCTGCTAATCAGAgAGGATCCAACATTCAGAAATATGTCAAGGCTGTGTACACTGAATTTACAGACTCCACTTTCACTACCCCGAAAACGAAACCTCCATGGGCAGGAATTCAGGGTCCTACGATCAGAGCAGAGGTGAACGACCGCGTAGTGGTCCACTTTAAGAACTTTGCCTCTTATCCTCTCAGCATTTCCCCGATTGGCATCCCCTACTGGAAACAATCTGAAGGTGCTGGTTATGAGGACTCCACATCTGTCCAGGAGCAAGAGGATGATGCGGTACAGCCTGGTGGATATTATAAATACATCTGGGACATTCTTCCTAACAGTGGACCAACCGTCACAGACCCAGAGTGCCTCACCTACTCCTACTCATCCCAGGTGGACAGTGTGCGAGATTTCAATTCTGGACTCATCGGTGCTTTCCTGATCTGCAAATCAGGCGCACTAACAGAGGACCGTCAACGGAAGGTGCCTGAGTTTGTGCTGCTGTTTGCTGTGTTTGATGAAAGTAAGAGCTGGTATAGAGACGTGGGCAGAGCAGATAAATTGAGGAAATCATCCGATCGCCAGCAGTTTCACACCATCAACGGATACGTCAATTCCACACTGAAAGGTCTGAAGTTATGCCAGAAAAGTCCAGAAGTTTCCTGGCACCTTATCGGTCTGGGTTCCACTCCAGACATCCACACTATTCAGTTCCAGGACCACACTCTAAAAGTCATGGACCATAGACGCATTACTGTGGAGATAACCCCTATGACCTTCACCACCGCCCTGCTCAAGCCATACACCGAAGGGAAGTTTCTGATTTCCTGTAGGATCCATTCACATCGGCAAGCTGGTATGAGTGCCTTCTTCACTGTGGAGAACTGCCCTGAATCCAATGAACTGCCTGAAAAGCAAAATGTCCAGCACACTTACGATGAAGACGAGGAGGGGGATGAAGATGACCCAGTGGATAATCTTTTTTCTATTGTGTTCCAACGTCACGGTCCCCCATCAGTTCTGAGGTCTGGTGGAAGACGACCCAAAGTCTGGATTCATTACATCAGCGCCGAGGAGATCATGTGGGACTATAATCCTCAGGGTGACCGACTTTCGAAGTTCGAGCCTTCAGTTCAACAGACACAGGTCTTGGGTAAAGTCTATAAGAAGGTGGCTTACGTCGAGTACACAGACAGCACGTTCACGAAGAAGAAGAGCCAAAGCAATGCATTGATTGGCCCAGAGCTTAGGGGAGAGGTGAACGACCAGTTTCAGattgtttttaaaaatatggccAGTCGACCTTATAACATCTTTCCAAATGGACTTGCCAGCGTGCAGCCTGTGAAGAAAAGAGAGAAGCAAGTGGACCTGCGGTCCCTGGCTGTTCCACCAGGTGAGATTATGATGTACCTGTGGAAGGTGACAGCAGAGGACGCTCCCACCGAGGCCGACCCCCGCTGTCTGACCCGGCTGTATCACAGCACGCTGGATCCAGAGCGAGACATAGCATCAGGCCTGGTAGGGCCCCTAATCATCTGCAAATCAGAGAGTTTGGACAAGCGAGGGAAAGTGTTATCttcagacagagaaaaacaccTCATGTTCTCCATCTTTGATGAAAACAAAAGCTGGTATGCTGATGAGAATATCAGGAAGTTTAGCGAAGATCATTCCAAGATTGATCGCAATGATCCTCATTTTTACAACTCTAATATCATGCACAGTGTAAATGGTTTCATGTATAACAGTCTGCAATTTAGTATGTGTGTTGGTGATGTTATGCTCTGGCACGTGGCCAATGTAGGTATGCAAAGTGATTTCCTGTCAGTGTATTTCACGGGAAACCCATTCGAAAGGGACAGAACCTATGGCACAGTCCTTACACTTTTCCCAATGATCGGTGACACTGTCATCACTGAGATGGAGACTGAAGGTGAGTGGGAGATTGGTGCCTTCGATCCCACTCTGAAAGCACAAGGGATGAGCGTACGATACTCTGTGTTTAACTGTGAACGAGAGTTCCCCTTGGTggacactgatgatgatgatgatgacttgGAGGATCACATAGATAAGCACTTCTCAATCCTAAGAAGCTTCAGGAAGAGGAACCGAACTGTGGCTATCCAGGTTTGCCAGAAAGTCTCAAGCAACACAACCCAAACAGAGCAGCAAAACGCAACCAAGATGCCCTTAGAGAAAAAAGGGGAGAAGACCATTCTGGTATGCAAGAGAAAATTTGTCCCAGTGGATGAAGCTGAGGATCTGGATGTTCTCTCCCAGGGAGGAATTCCGCAGGATATTCTGGATGAACTCAACATGGAGATGAGTTCATCAAAACGCCAGAAGAGACTTGCTTTTGTAGAGAATGACACAGAAGCAAAGAGCGATCATCCTCCCTCTCGTTCCCATGACACAGAATCGAAGAgtcagagagggaaaaaagtagATAGCATGGTTAAGATGGGAGACAATAAAACAGTGAGATACCAGGATGTAGATAAACCTGAAAAATCAAATCCATCTGTTGACCTGTTTAAGAAATTCATTCAGAAATCAGGGCTGAATACGACCTCTGATTTGGGTCCCAAGGCTAATTTAACAGAGaggactcagagagagagacaggaaaagaaTAGAGAGGAGGCCACAAAAGCAAATGATGCAATGAGTGACAATGATGTTCTAAAAGACTCAGTTGTAGAGCTGGACAAGCTGATGGAAAGCCTAGATCCTCATAAATATGCCTACAAAGATGTACAACATCTAGATCTGAGCTCTCAGCATTCCCCATCAAGCTCCTCACAGAATGAGACCCACCTGAAGAACCTTCCGCCCTTGGAGTATGACGATTATGAAGATGAAGGGAACAAATCAATTCTGAGCGTCGACTCTACCAATGAAATTGATATCAGGTCTGGTGACTCAAAATTCCGTAGCTATTACATCGCAGCAGAGGAAATCATGTGGGATTATGGGATAGACAAACCTTCCCATCTCATCAGTGCCAGGGAGACGAAGAGAGGAATGAGAAAGTATTTCCCAGCCTACAAGAAAGTTGTGTACCGAGCATATCATGACAGAGATTTCAAGAAGCCTGTGAAACGTGGAGAGCTAGATGAACACCTTGGGATTATGGGTCCTGTGCTTAAGGTGGAAGTTAATGATGTTCTTACTGTAGTTTTTAAGAACACTGCCTCCAGACCGTACTCTCTGCACCTACACGGTGTGTATGATAGAACCATGGCGAGCTCTGCACCACAGGGGGTGGAGCTACGGGATGATGAGGGACCTGGCGACCCAGTGCCTCCTGGAGAAGAGAGGATCTACAGCTGGAGAATTACTAAAAGACAAGGACCATCATCCAAAGACTTTGACTGCAAGGCCGGGGCCTATTACTCTACGGTTAATATGGAGAAGGACATAAACTCTGGTCTGATTGGTCCTTTGCTAATCTGTCGCCCTGGGACACTTAAACCGCGCGTCCTCCTACAACAAGGAGTCCAGGATTTATTCCTCCTGTTCACCATTTTTGACGAGAAGAAGAGCTGGTATCTGGAAGACAACATCAGGCAGTTCTGTAAACCACCATGCCAGGCCAAAGTAGATGATCCCTGGTTCGAGACCAACAACAAATTTGCTGCAATAAACGGATACGTCGCAGATACTCTACCTGGTCTGGTGGTGGCACAGCACCAGACATCTCGCTGGCACCTGCTAAATGTGGGCAGTGTTGGGGAGTTTCATGCTGTCCACTTCCATGGAATACCTTTCAGCATTGGGAAAGACCAGGAACACCGCCTGGGCATCTTCAACCTTTATCCAGGTGTGTTTGGAAGCATTGAAATGAGACCAGGAGTAGTGGGCACCTGGCTGGTGGAGTGCACCATTGGAGATCACCAACGCTCTGGCATGAGAGCCAAACTTCTTGTTTATAACGCACAATGTATTCAGCCCTTGGGAATGCAGTCAGGATGGATAGCTGATGAGCAACTCACTGAATCTGATCATTAtgGTGACTGGAAGGCAGGATTAGCCCGATTGCACTTATCTGGATCAGTTAACGCTTGGGTCGGCAACAATGAGAACTCCTGGATCCAGgtggATTTGTTACGGCCCATGGTGGTCCACGGGATCCAGACACAGGGCGCGAAAACTTCATTTGGTCTGAAAGACATGTTCACGATGATCTTCACCATCAGCTATAGCCTGGACCAGAAGACGTGGAAGATGTACAAAGGAAACAGCAGCGAATCTGAATATaaATTTAATGGAAACCTGGATGGCTCCAGGGTAAATGACAACATCTTCTCTCCTCCAATCATTGGTCGCTACATTcgtattcatccatccacccatgtCATCAAGCCCACTCTGAGGTTTGAACTGCTGGGCTGTGACCTCAACAGTTGCTCACTGCCTTTAGGAATGCAGAGAAGACATCCTGAAATTCAGATTAGCGCGTCTACCTTCCGGCAAAGCTGGAGAAACTCATGGATCCCAGACCTCGCCCGACTCAACCAAGATGGCAGCGCCAACGCATGGAGACCCAAGtcTAATAACCCATACGAGTGGCTGCAGGTGGACTTTATGAACGTGAAGAGAGTCACTGGTATTGTCACACAGGGAGCCAAATCCCTGTTCACAAGCATGATGGTGACCGAGTTCTTGATCTCTGTTAGTGATGACGGCCACAGCTGGGCCATGGTCACTGAACCGGGAACGCAGCgggagaagATCTTTGAAGGGAACAGCGATCACGATGAGCAGAAGCTGAACGTGTTCGAGCCTCCGCTGTTCACCCGGTTTATCCGCATCCATCCAAAAGGCTGGGTTAATGACATTGCACTGAGGGTGGAGTTCCTGGGATGTGATACGCAACAGAGACTCTGAGAGACAGGCGtataagagagatagagagtgtgtgtgtgtgtgtgtgtgagagagagagtataaaatatatagatgtgagaagaaaaatgtgagaaCGAGActgtgtgagaatgtgagagtgtgagagaaatagaatgtgtgaaaaaaaagacagaggtCATTGACACTGAATGTAAaatggttattattttttaattattttaattattttttgtattatttttattttcatcactCAAATCTTTTGATGCTGTAAATggatttctgattggtcaggatcTGTTCAgcgaaatatatttatatatatttaaaaaaaaaagtactgcaCACACATTGAGTTGCCTGTTTATTCTGTACACTTGTAGCTTTCGTCACGTACCGTAGGTCactgtgtatatgtacagttGTACTGACTGTAGCCTGTTTGCTGTGTGGCGCGGTCATGAGAGTATAAGGTACAGCAGCAgtgtttttaaacactgtgtacactTACTACACACTCCTACTTTGTTGGCTCAGCTTGTAGGTGTACAGTTAGAGACCATAGTTTATCTTTTtccatgcacagtgtgtgttacccCTTTATCTTTGTCAGTTTatgaccacagcactgctgctgtACCTGATAACACTCGTACCAGCACAACGCACATTGTTACCATGGCattgtcactgctgtgctgagaaggGTCCACCTAATAATATCTGGTCCTCTACGGTCTTCCATTAGTCTTTTCCATTAGTAAACAAGGTAGAAAGGGCTAATACATTGTGCATTGTCCAGTCAGTGACCTATGCAGGTGGACCTGATTAAAAGGCAattcagtatatacagtatgctggATACAAGGAAAgatatgtacatatatttttcTTGCATATGGATGTGTTAGTTCTGCCTTTtgttacagtttttattatttatgaactATGCAATAGTTATACATCAAAACTGCTTGTTCACTGTCAAATATGCTGctcatttaatgtatttaaaaagtgtttaatctGCTCATGTGACTACAGGAGGTTCAAATATcagtatacatttattttcagtcttACCACATGTTAGGACACATATCTTAgccacatgtactgtatataatgaaGATATTATTAACACTACTGAGGTTTTATTCTGAATGTAGATTTGAGTGTTTGCACTGTGAAAGGATTCAAATGACTTAATTTGAtgtgatttataataaaattaagtaTTTAAGTATGAAACGCAAAA

Function

GO: NA

KEGG:

id description
K03899 F8; coagulation factor VIII

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254231 lncRNA upstream 20156 21185266 ~ 21186303 (+) True G214731
TU254221 lncRNA upstream 43155 21162900 ~ 21163304 (+) True G214723
TU254190 lncRNA upstream 48371 21144820 ~ 21158088 (+) False G214694
TU254189 lncRNA upstream 48371 21157282 ~ 21158088 (+) True G214694
TU254148 lncRNA upstream 182372 21011774 ~ 21024087 (+) True nudt6
XR_004579331.1 lncRNA downstream 130002 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA downstream 130002 21356850 ~ 21359059 (+) False LOC117598756
TU254313 lncRNA downstream 141176 21368024 ~ 21368228 (+) True G214798
TU254315 lncRNA downstream 179525 21406373 ~ 21464629 (+) True G214800
XR_004579359.1 lncRNA downstream 187614 21414462 ~ 21416513 (+) True LOC117598826
XM_026916808.2 mRNA upstream 21609 21181413 ~ 21184850 (+) True tlr1
XM_026916764.2 mRNA upstream 124445 21047261 ~ 21082014 (+) True LOC113528291
XM_026916148.2 mRNA downstream 61632 21288480 ~ 21293794 (+) True LOC113527948
XM_026916510.2 mRNA downstream 74795 21301643 ~ 21328754 (+) True sec24b
XM_034309781.1 mRNA downstream 114341 21341189 ~ 21348917 (+) False hopx
XM_026916224.2 mRNA downstream 114449 21341297 ~ 21348917 (+) False hopx
XM_034309848.1 mRNA downstream 154932 21381780 ~ 21387087 (+) True LOC113527892
XR_004579430.1 other upstream 1130051 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 1225079 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 1253173 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 1296294 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 1893241 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 113568 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 114399 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 114399 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 114399 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 114718 21341566 ~ 21348829 (+) False hopx

Expression Profile