RNA id: XM_026916782.2


Basic Information

Item Value
RNA id XM_026916782.2
length 3741
RNA type mRNA
GC content 0.55
exon number 24
gene id atxn2l
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9009585 ~ 9021533 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCAATCAAAAGAGATTTGCTGAAAGCGGGTTGCCATTATGTTTAAGGCAAATCTTAAGACGTGGTACCGgcttttttaacaaaattaagAAATACTGTTTAACACTTTTCTCAAGAGTGCTCATGACATGTTTTCAGAATAAAGACAGAAGAAGATTCTGGGCACTTGGAAAGGAAGCTATCGAGGGGTGCAGGATATTTCTGACGCGTATTCCgagatttagctagctagctatcaagGTTGCTAGCATACGCCAGAGAACACTGAGACGCGCCACAACGTTAGCTGACCGGCCTAGTTAGCGGCTAGCGATGTCTTTCCGCCGCCAGAATCAACAGTCTGGACCAAGTGGCCGCAAAACGTCTAATGGACCTTCTGGATCGGCCGGCATGTCACCGACAGTTCCTGGGAGTAACACTACCAGACCAGCCCCTGGAAGGAACAGAAACTCTGTGAAGCCTCCCTCACAGTCTCCTCCTGTGTTTGAGGGAGTCTACAATAACTCCCGGATGCTTCATTTCCTCACAGCTGTAGTGGGCTCTAGGTGTGACGTGCGGGTGAAGAATGGCAGTGTGTATGAGGGGATCTTTAAGACACTAAGTTCAAGATGTGAGCTGGCAGTGGATGCCGTGCACAAACTAAGGACTGAGGATGGGGATGGCTGTGGAGGTGGTACATCCACACACCCCAGGAGAGAGGAGATCACAGACACAATGATCTTTAGCCCCAGTGATTTGATCACCATGACCTGCAGAGATGTGGATCTCAACTATGCTAcacgagACACCTTTACAGACTCGGCGATCAGCTCGTCCAGAGTAAACGGTGATCACAGAGAGAAGGTGCTGCAGAGGTGGGATGGTGGAGACAGCAATGGAGAGAACTATGATCTAGATACAGACACAtCTAATGGTTGGGATGCCAGTGAGATGTTCCGTTTCAATGAAGAAACATATGGGGTGAAGTCCACCTATGACTCAAGCCTCTCAATGTACACGGTTCCCCTGGAGCGAGGTAGCTCGGAGGGTTTCCGGCAGCGAGAGGCGCGAGCTGCACAACTGGCCAGTGAGATTGAGGCCAGTTCACAGTACCGCCACAGAGTGGCGCTGGAGAACGATGAAGGGAGGAGCGAAGAGGACAAGTACAGTGCTGTGGTGCGGCATggaggcgagagagagagggggagagacagCCCTGGCTTCTCCAACTCTGGGAGCCGGGAGGGCAAATACATTCCCTTACCCCAAAGAGCGAGAGAACGAGAAATTGGTGCGTCCAGAAGTGATCGAGAAAGAGGAGGACCCTCCTCCGCACTTCCTAATCGAACAAACAGACCTGCCCCCTCAAGCTCGTCCCCCAGGCCGCCTCTTCCCTCTGGCAGTGGGCAGCCCACGCCGCCTTCTGATAGGAACAGTCCGTTGTCAATCAGAGGTGGATACTCTCCCCACCAAGCACAGTGTAGCCCACCTGCTCAGCCCCGACCCTTAGAGGCAGGCCATGCCAGTCCTCCTGCCCCACACTTGCTCCCCCATTCCCTTTCACaccctcagtctctctctgagTCTGCACGACCTGTTAATGGAGtGTCATCTAGAACATCTCCCAAATCTCAAAGGCCTGCACAACCTAGAAGTTTGCGCACGTCCAACTCTCACTCTTCACCTACAGTCTCACATTCCCCTAAACCCGATGCACCCAATCAGGATCCCCCTCTGACTGGTCCTACCTACCTGGATACCTCTTCAGTTAACATGGTGACCCCAAAGCCCTCTGGCCCCACCCCACTCTTCCCTGTAGATGTGAATGAGATTTTATCCAAGGAGAGGACAGAAAGCCCTGCCAGTCCTCAGGAAGGCAAGGGCAGTAaagCTGCCTCACTTCAGCAAAGGTCCCAGATAGAGGAACTTCGCAAGTTTGGGAAGGAGTTCAGACTTCACTCTAGCTCCTCGCCCTCCAGCCCCAGTACTTCAGCCACGCCCAGTGATCCTGCTCAGCCAAGCCCTACCCAAAGCACGCAGACAGACTCCACCCCCTCCACAGAGCCCAAAACGATATCGCCTACAGCTCCATCACAGGAGCTTCCGTCAGATGAAGCAGGCAGGGAAACGAGTGCTGAGGGTCCAGCTGCAGCCACCCCACCATCTGTCACGCCCACCGTCACACCTTCTGCCACACCTGGTGGTGTTTCCCAACCCTCTGGTACAGATGGACAAACAGCAGTGCCGCCCCAGCCTGCGAGGACACCAGGCAGGGAGGACGGCAGACCAGAGGCCGCAGACAGAGCGGAGGGTGTAGCCGATCAAGTGAAGAAGTCCACATTAAATCCCAATGCCAAAGAGTTCAATCCTGCCAAGGCCCCTGTCACTATGGTGAAGCCTTCTGCAACTCCCACAACTCCACGGCCCACACCTCCAAGCCCCTCAGTGGTGCTCCAGCCTCCTGCAGGACAAGGAGCCATCTATAGTCCTCAGTACCTTAGCTACGTTTCAACAATACCCTTACAAGGCCACTCTGTGCAGGCCCCGCAGATGTACCAGTATGCTGTGTCTACCGTGAGCCAGGGAAAGTACCCCAGAGCTAAAGGCTCAGTGGTTGCCCCTCGTCCAGACCATAACTCCTCGGCGCCTCCTATGATCCAGGCAGCAGCATCGGCAGCAGGTCCTCCTCTTGTGGCTTCTCCTTATCCTCAGTCTTACCTGCAGTATAGCCAGGTCATCCCTGCTATGCCACACTATCCTGGACAGCCGGTGTATTCCATGCTGCAAGGTGGAGCACGGATGCTGAGTTCAGGGGGACACCCTCAGACTCTTGGACCTCCTGGTCCTCAATACCCCGGCCAGACTGAGGGACCGCCAGGAGCCCAGCAGGGCATGTATGCCCCCCAGTCATTCTCTCATCACTCAGGCTCCATGCATCCTCCGCAGCCCTCCACCACTCCCACAGGCAGCCAGCCGCCCCCTCAACACCCCGCCCCCAGCCCAGGACAGtctgGTCAGTCAGGTCCACAGCCACAGACCTTGTATCATTCTGCTCCCCTGTCAGCTCCCACTCCCCCTAACCTGCCCCCAGGCCACAGCTCTCCCCAGGCCTCATACCCCCTCCAGGGCTACAGCCTGCCAGGACACCAGCCCCTACCACACCCCTACCAGTCCATTGGGCAGCTCACACAGGCTCATGTCCAAGGAGCACTGTCGGGTCCTCACCACTCTGGGGGTCATGGGCCTCCTCCGATGATGCTGCTTCATGCTGCTCCTCCTCCCCCTCAGCAGGGTTCCGGTCCTGGCCCCCAGCACCCTACACATGCACCCCCACCACCCCAACAAGGAACTCATCAGCACTACACCTACATCGGGCACCCGCCAGctGTGCAGGTGCAGCCCCACCCTCCTCAACAGATGCCCTTCCACCCTCCTGGAAACTGAGTCAGAATTCAGGCTCCATCTGCCCCTGATCTTTGGAGTGAGAGTTTCTCTTGCTGATTCTGGACCAGGCTCacctacacactaacacacacacacatgcgcacacacacgcacacacacacacacacacacacacacacacacacacacacaaaaaaccttTCCCTTTGCTCCAGAAAcagactttttttgtttttattcttatcCATTGGAAGgactttccttttttctttaagtTGAAAGGACGGGCACACAGAGTGTGTCTAAAATGGAGGgaatgagtgaaagagtgagaatGACCAAGTGAGCATGATGGAA

Function

GO: NA

KEGG:

id description
K23625 ATXN2_2L; ataxin 2/2L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246445 lncRNA upstream 26275 8982027 ~ 8983311 (+) True G208105
TU246433 lncRNA upstream 51518 8957260 ~ 8958068 (+) False asphd1
TU246318 lncRNA upstream 135294 8851803 ~ 8874292 (+) True G208004
TU246211 lncRNA upstream 204153 8804488 ~ 8805433 (+) True G207932
TU246265 lncRNA upstream 241681 8764526 ~ 8767905 (+) True G207980
TU246490 lncRNA downstream 642 9022175 ~ 9022947 (+) True G208120
TU246492 lncRNA downstream 5756 9027289 ~ 9027537 (+) True G208122
TU246494 lncRNA downstream 8138 9029671 ~ 9029875 (+) True G208124
TU246495 lncRNA downstream 9860 9031393 ~ 9031921 (+) True G208125
TU246502 lncRNA downstream 20261 9041794 ~ 9044122 (+) True G208132
XM_034310042.1 mRNA upstream 2741 8993518 ~ 9006845 (+) False sh2b1
XM_026916621.2 mRNA upstream 2741 8995096 ~ 9006845 (+) True sh2b1
XM_034310041.1 mRNA upstream 2741 8995096 ~ 9006845 (+) False sh2b1
XM_026916898.2 mRNA upstream 19397 8986572 ~ 8990189 (+) True LOC113528379
XM_026916597.1 mRNA upstream 43306 8962148 ~ 8966280 (+) True cabp5b
XM_026916138.2 mRNA downstream 40030 9061563 ~ 9063413 (+) True nupr1b
XM_026916917.2 mRNA downstream 53436 9074969 ~ 9099241 (+) True doc2a
XM_026916067.2 mRNA downstream 211470 9233003 ~ 9245784 (+) False baiap2l2a
XM_026916069.2 mRNA downstream 213946 9235479 ~ 9245784 (+) False baiap2l2a
XM_026916068.2 mRNA downstream 213947 9235480 ~ 9245784 (+) True baiap2l2a
XR_003402909.1 other upstream 106909 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1001319 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1156077 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1709902 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1737055 7272460 ~ 7272531 (+) True trnac-gca_18
TU246534 other downstream 40032 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 922773 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1327869 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1350882 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 1391451 10412984 ~ 10417881 (+) True G208781

Expression Profile