RNA id: XM_026916785.2


Basic Information

Item Value
RNA id XM_026916785.2
length 5004
RNA type mRNA
GC content 0.46
exon number 8
gene id fam171a2a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7884149 ~ 7931511 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATAGAGGCGCGGAGAAGGGAAGGGAAGAGAAGGGGGCAGAGTGGGCATCTCCGGATCAGCACTTCTCTGTGCTTCATCCAGAGCAGTAAACATGGACGAATGGCCGCCTCGGGCACTTCTGTGATGTTGCTGTAAGAATGCCGCCGCCGCGGATTTCCCGATTCTTCGCCTTTTCGCTTCTCTTGTGCGGCGTTTGGCTGAAATCCGCAGCGCAGAGAGGAGCAGTTGACGTACTGATTAAAGTACAGATCTTTGACAACAGTGACCTTTCACCTCAGAAAGAAGCTGCAGTTCAGGTGCATGGGAACCAATCCGTCTTGGCATCTGGCCTCACAGGGGAGGACGGTATTGTCACAGTTACCTTCTTGTACCGACCAGGAACCTGGGTCATTGTCTCAGCCTCCAAGCATGGATTTGTGACGAACTCCGCCCCTTGGCATGCCAGTCGCATCCCCTTGTATGCTTCAGTGAGCCTTTACCTGCTTCCCCAAAGACCAGCTACATTGCTTCTCTATGATGATGTGGTGCAGCTCCTGCTTGGTTCTCCAGGTTCCAGAAGTCATCCATGGGTACAGCTCCAGAGAAAAGCCATCGGACCCACAGTCAACGCCTCCCAAGTCACTCTCTCGGCCATGCTCACCTCCACTAGGAGCCAGTACGAGCTCGGTGGCTTCCCCTATCCCCTTGGCCTGGAGAACAACAGCACAGGCTTGAACAGTAGCTGGGTAGAGCTGACTGCAGTGGCTGCAGTTTGTGCCACACTCACTGGACCCAATGGCACAGAGGTGCAGGTCTCAGAACCTATCCATGTTTCCGTCCCTCTTCCCTCAGACTCACCACTCAAATCTGCCACCAGTGTCCCCATCTGGAGGTTTGAGGACAGGACAGGTCTGTGGGTTAGAAGTGGTGCAGGCTACATTAAGAAAGATGGGTCTCACATGACCTGGAGTTTTGTGGCTTCGCATTTAGGATACTGGCTTGCAGCTTTTCCATCAGCTGGAGGCACAGTGCTGAACTCTGGCCTGAGAGATATCACCATGTACCACACCATCTTCCTTCTGACAATTCTGGGTTTTATGGCCCTACTGGTTCTCATCTTGCTCTGCTTGTTGCTCTACTATTGCAGGAGGAGATGCCTGAAACCCAGGCAACATCGCCGTAAAACGTATATCTCATCTACTCTGGAGAGCTCCAAAAGGGACCAGGGTACATCAACTTCTCACCTTAACCTCATCAGCGGTGGACGTTTGGAGACAGCCTCCTCCACTGGAGATGGTGTGAAATCAGACCTGTCCTCTACGAGGGACTTGCACAGCTCACGGGAAGACTTTTTCCGGTGCAAGCAGCGCCATTCCAAGGGGAACAGCAAACAAGGCGAGAGCTTCCCACTGCATGTCACCTGTTCCACCAATACCAATAACTTAGATCTCCTTCTGCGAGATAACCACGGCAGGAGTTATAGTTCAACAGATGATTCTGATGATCGTAGAAACCATCGTCATCCCCATAATGCCAAGGACAACCAAGGTTATACATCTGatcctccttctcctccacgGTTGCTCCCATTTGCTGGTCACTACCAGGAGCAAAGGCGGGATAGCAAGCCCCCAGAGTACTCCGCCTCTCAGGCTGCAGATAACTTGAACAGACCTGTCTCCATGAATGCACAGCCAGGCCAGCTCATCTTCTGCCATTCCATGGAGCAAATGAAGGACAGCATGTACCACAGTGTTGTTCCTACCTTAGTCATCCCGGCACATTACATGCGCCTCTCCACAGATCTGTCATCCATGGAACAGGTTGTGGAGAGgcagcagcagctgcagcatgATATGGAGGCCATTCAGGTGAGCATGACATTACCTCACCAGCAGAGTCAACAGCAGCAGGAAGCCAAGCAGCAGACCGAGACAGAAAAAGCCAGCCAGCAGGGAGAGGAGTCACAGGATCAAAACTGGAGTTCAGATGCCTCCTCTGGCCCAGTCCACATCCCTGTGCTGTTCAACGAATCCACCATGACACAGATGAATGGAGAGCTGAAGGCTCTCACGGAGAAGAAGCTACTGGAACTGGGCGTAAAGCCTCATCCTTTGGCCTGGTTTGTGTCCCTTGATGGCCGTGCCAATTCACTTGTCCGGCACTCCTACATTGAGCTGGGCAATGAGCCTCTGCGGGCACCCCAGGAGCACCATGCAGAGACATACCCTGGGAACTCAGGAAGGTCCTCCCAGAGAAAAAgcaaagaggaaagaaaggcAAAGGAAGTGGGTGAGAGAAAGGCCCATGGCAAGATCTACTCTAAGCTCCCAGTCATTGACACCACCCACCCCAGCACCAGCAGTGAGAGCCACACAGCCCCCTACTCACCAGAGGATGGCTCCATGGCACCACTACTTGATGACACTCCAGAGTCCCGGGGTGGAACATTTCCACGTAAAAGACGCAGCCGAGACTACAGTGCCCACAGTAGTATCACAGAAGACCGCAGAGATTTGGGGACCAGTCcagatgatgatgacaatgatggAGATGACAAGGACGATGAAGGCGAGAATAAGAAGAGCCCGTGGCAGAGGCGTGAAGAGAGACCGCTCATGGTGTTCAATGTCAAGTAGTCCCCACAAGCATAAATTTGTTCTATCATGAACTCTGCCAGTTTCCTTGTCTGGCACTTCTACATTAAGTAGGGCAACATGATATTGCAGTCAATGATCATAATGGTACCTTGTCTGCACCTTTGCCTCTCATTGTGAGACTCTTGACTCACTCGTGGACAAAAAACATGGAGGTGCCATTGCTTTCCTTTGGACCAGTTTACAGAAAAATTAGTCAGATGTGGTTCACCACCAGTAGAGACAATATGATTTTAACAGTGACTTGTCTCTGCTTGCCAGCTAGTACTTAAGGCTCATATTCTCTTGAATGCCCTGCAGGTGGAGTATTTTCTAGGATGTGAACACCACTAAACCAGACTTTGGTATTTTTTAAGCCTAGTCTTTCTTGAAATAATTCGGTGTGGTTAAATTTAAATGTCACTACCCTGAGGACAATGTTTCTTCTTCTACCAGTAAATGCTTCACTCTACTGGGAATGACTATGAGCCATTTTTAAACTGACATTGGGACATAATCCATGGGCCTTAAAGAATTTCTCAAAAGAGAATGAACACCcaaaaattatgaaatgttGAAAAGACATATGGAGTGAATTGTGGTCCATAGGTCCAAAGGTCtggtggtttcttttttttctcaatctgTTCAGGCTTTCATGAAGGTTTGGATTTCATATAATTGGTAATAAAATAgagatgtgtgttgtgtgtgtctgaatcaAACCCTCACAAAAGGGAGTGAAATATTGCTGGGTTAATGTGTTTACTCTCCTTCTCATTTAATGCCCCTGAATTTGCCCCTTTAGAATTTGTCCTTTTAACCTGATCTGTGTAAGCAATTTTACAATTCTTGAAGGCTTTCGTTTTTTGCAGCTTTACTGACTGTGTTATTCTCTGACATCCAACTGAATCCATAGGAGATGCCCTGAGTCTCATAGAAAAAAGATTTCTCAATTTCTTTTGATGATTAACAGTTCTAGCTTCCTAAAGGGTTCTACTTAGGGAAAGGCAACCCCTTTGTTGCAGGACTATATATTGATCTTTTTGGTGGATAGTGCTGCTCCATTTGCATTGTGCGGCAAAAAATGGTTTGGTGTACTGCAGCAAAAGTTCAATGAAGTTGAACTTCATGCAAATAATTGTGGCCAACATAATGTATTTGGCCAACCAGGGGAAGACTTTTCATTTGCCATAACCAAATCCAAATAAATGCCAGAGAAATGCCAAGGACAAACAGAGAGAAGCCATGCAGCAGCATGTGACCAGAAAACGTGGACATGTAGTGTTAGGGGGACAAACCAAAACACTTCAGCATGCTAGATGGAACCTTGTTGTCTAAGAGTTTAATTGGCAGACTTTTACTTTATATGTGCTGGCTAGGAAATCAAAAGAATACTAATACAGACTGTGACGCCAGCTGTATTTCATCCATGGTCTAATAGAGCCCCAAACAGACTTTATATATACAACAGCCTTGTTCATTTCTATCactgaaatgctgaaatataTACCAGCTTATTTTCCCAGAGGATATGTGACATTTATTGGCAGTTTTGATaaagctgtaaaataaaaaaggctaAAGCTGCacttaatcattttaatcatcagcttctctttttccccctcaaaaTTCCCTTCCTGGCATAGTGTGAAGTTGGTCCAAATCAACTATAGACCAGCTTGTACCTGGCTGTGGTTCTTGCACTTGGCATCAAAAGACACTTGTAATGCACAACTAGGCTTCTTCACTTGTCAAGAAGTGTTCTCCCAGTTTTTCAATTTGGAATGGTGATGCATGAATGAATTTACACTAGAGGAAGTTTATCaggtatttttttaacatgtttaagtATTGCTTAGTCAAGCATGCTTACTAAACTTTGTGAACCACTTGTTTAATAGCACTGTAGTAAACTTACAGTTTTACTTTGGcctcatgttttattttgtctgtttccTGATCATGACATTATCTTACTTTCAAGATGTACTTATCTCTTAAGTGTTTCAAATAATTGAAATCATTGTGTTAAacgattttgatttttttttgtttgtttttaaatagcaCTATTTTTAGAATATAAATCAGTAAGTCCTACCCTTAGCATGCCAAAGTTCATACTAAATGAAGTACAAATGATGTACTAACATCCTGTCAGCTTTCCTGTCACATTCAGTCTCTCTTGTTGCCTCTAAAGTGCCTTTCTGTGTCAGACTCAGCCCCAGCCTTGTTGAGTTCACATAATTATGTGTTATTCAAAATGACAATCTGACAAACAGGGCCAGTTTTCCACATACAAATAAGGCAAGACTTTCTGCACTGTCATTATTTTTGCTTCAGCAAGGCATATCCTGTGTCTAATAAACCAGCctgaagata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245704 lncRNA upstream 28260 7855431 ~ 7855889 (+) True G207483
XR_003402956.1 lncRNA upstream 192480 7686051 ~ 7691669 (+) True LOC113528563
TU245526 lncRNA upstream 316336 7564303 ~ 7567813 (+) True G207309
TU245323 lncRNA upstream 355411 7444823 ~ 7528738 (+) True G207158
TU245322 lncRNA upstream 440396 7443069 ~ 7443753 (+) True G207157
TU245778 lncRNA downstream 76685 8008196 ~ 8008411 (+) True trnas-cga_1
TU245802 lncRNA downstream 102414 8033925 ~ 8035373 (+) True G207570
TU245829 lncRNA downstream 188941 8120452 ~ 8143237 (+) True LOC117599010
XR_004579452.1 lncRNA downstream 188942 8120453 ~ 8142645 (+) False LOC117599010
TU245851 lncRNA downstream 226433 8157944 ~ 8158181 (+) True G207610
XM_026917203.2 mRNA upstream 4085 7860224 ~ 7880064 (+) True itga2b
XM_026916612.2 mRNA upstream 386616 7483781 ~ 7497533 (+) True LOC113528203
XM_026916038.2 mRNA upstream 467353 7407546 ~ 7416796 (+) False dhrs7b
XM_034309664.1 mRNA upstream 467353 7407560 ~ 7416796 (+) False dhrs7b
XM_026916039.2 mRNA upstream 467353 7407646 ~ 7416796 (+) True dhrs7b
XM_026917174.2 mRNA downstream 1855 7933366 ~ 7950248 (+) False syngr1a
XM_026917173.2 mRNA downstream 1855 7933366 ~ 7950248 (+) False syngr1a
XM_026917175.2 mRNA downstream 1855 7933366 ~ 7950248 (+) False syngr1a
XM_034310082.1 mRNA downstream 1855 7933366 ~ 7946901 (+) True syngr1a
XM_026916959.2 mRNA downstream 22283 7953794 ~ 7955245 (+) True tcap
TU245701 other upstream 30640 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 584465 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 611618 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 768214 7108178 ~ 7115935 (+) False LOC113528597
XR_003402939.2 other upstream 787470 7084441 ~ 7096679 (+) False eftud2
trnas-cga_1 other downstream 76675 8008186 ~ 8008267 (+) False trnas-cga_1
XR_003402909.1 other downstream 965107 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 1130054 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 2012795 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 2417891 10349402 ~ 10417881 (+) False G208781

Expression Profile