RNA id: XM_026916788.2


Basic Information

Item Value
RNA id XM_026916788.2
length 5168
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC113528304
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19933824 ~ 19953286 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTCAGGCtccacctcttttttttccaaaactaaACAACATGGAGCAGAAAAAGCGGAAATGCGTTTCAACTCTGCTGGATTCCTATGTTtagagtgttttattattattattattattattttttaatgtccaTATAGCGAAATATGAGAGAATTCAGTGTGATATAGGAGTTTATGGCGCTTTATGATTTGTCCTGGATGCTAAATGCGTTGGTCTCGCGCGACCTTCTCTTTCTACTTCGCGTGCATCCTATTGTGTTCGGCGCGAGCCGTTCACCGCCGCCACAATGCGCGCGTGCTTACTCTGAAACCGGAGGATAACGGCACAGTACCTCTACCGGAGGAGTGCAGCACCATGGCTCAGTGCTCAAGTTCGATTGGATTCGATCAGAGGAATCAGTGTGAGCATTTGGACCTTAATGCAGGAAGCACTTTCCTCTTAAGTCAGTGGAACGAGGAAGTCACTGTCTGCTCAGCGGCCCCTGAGGGACCCTGGGGACACAGCCTGTACGCTCTGATTGACCAGCTGAGAGAGACAGTGCTTTGGCGAAACCATCAGAGAGGGCCACGACACACACTGCCTCAGATAGGGTCTGCTGTAAAGTCATCAGAATTTGGTGTCCAGTTCCAGAAATGTGCTCAGgtggaaacaggaagtgagtttCCCCAGGTAAGTGTCTACCTGGTGGTTAAAAACCTTGAGGGCGGAACAGACCTATCACAACTCAGTATACGTGACACCATCTCTGACATCGTCAGCCTGCAGACCAATGGGAAAGTGCAGGACAGAGAGTACCAAACCTTCAGCACGGACACACTGCccgctgGCTCCAGTTATGCTGTATCATACACAGCAAGTGTGAAAGGTAGCACAAATGAAGATCTGTTTCTACCAGCGTTCCTCACcttctccagcacatctcagAATGATATAAATTTAATTGGGCCTGTGGTGGTGAATTTCACTCTGAGGATAAATACTACTGAAAAGgtgtgtgtgaatcaTGCCTTACACTTTGCAGGATTCTGCGTAGCTTTTCTGATCTCCACACTTCTGCTGTCTTTCACACTACTCACCGCCAGCTGCTTCTACAAGAAGTGCTTAATGCGCACACCTCAGCATAggAAGAGGTGGAGCTTTAGTGTAGAGGCGGAGCCAGAGGAGGCTGTTTCTAACACCAGTGACACAGCCAATGAGGACGCTGCGTTTGAGGATAGAATTGTTGACATCATGGCACTGGAGGATCCACAGGACATGTCACATGCTCTGGACAATTTCGAGATGTCCTCTCTGTTGCGGGGTGCCGTGATGGtggagtgtgtgcgtgtacagATGCTGAAAGGTGTGTTTAGGGTATTAACAGCCAGATTAACCGGGTCCAGTAATGAAGTCAGCATGGTGGACCTGCTCAGTCATGTGACCGACATGCAGGAGGATCAGAAGTCACaacttaacacacactctaccactgaagcacacacagagcgacagCACGTGGAGCAGCGGCGTTTGGAGGCGTTACGCAGGAGAGAAGAgctccacatcatcatcagtgaGGAAATAGAGGAGGCGGCAATGACGGGGGGAACACACATGGCCAATCAGCTGCTGCACAGATACTATACCTGTCAGGATCAGCTGGAGTCAGTGCTTGATCTGTTCatagccaatcagagagcagcgCTCAGTGAGCAACAGGCACAGCGGCGCTTTCTGTTGCAGGGTTTGCAAGATCTACAGCGTTCCATGTGTGACATGTTCAGTGCTTTCTCTCGCCACATCGACAGCTGGTTCACCCACATCCGCAGggaGGGTGTTCTCTCTGATCAACACTGTGTGCAGCAGTTGGAGCGTGCTCAGTCGGAGCTCCAGCGTGTCCAAAAAGGTTTTGAGGAAACGCTGGGCCGAGAGCGTAGGTCAGCCCATTGTGACATCATCAAAACGAGACGAGCACGCATCGCTGAGACGctaTTTGAGCAGAAGCATGAGCAGCAGGATTtggtgtgtgggagtgtgtgtgacgGACCGCTGGAGGACTACTTGATGCGCTGGCAGACGCTCCTCTGTGCTCATAACACACACCTCTCAGAACTTATTACACACCTGGACCAGGAGGCAGCAGCGCACATACGgcgggtgctggtgtgtgtgctgcgAGATGCTGTAGCCGACCTGAAGCAGGTGGAGTGTGAGACAAGTGAGTCGCTGCAGGAGGCAGGCGTCCCACGTTGGCTCCTCCTCCAGATGAGGGCGGGGTCAGTGGTAGGCGGATGCCTGGCCGACACAGAGGCAGAGCTTGGTGTTCGGAAGAGGGAGGCGGCTAAAACGCTACGACTGACACGCAGCAGAATTCAGCAAATCAGAGAAGAGGAGCTgcagcagcagagagaaaggagagagagaatgcacacatactgcagGAGTGTGTGGGAGAGTCAGTGTTCTCTGTCGGAGAGTGATCTGCTGCGTATGCAGTTGGAGtatgtgaagagtgtgtgtcaTCTGGATCGCTGCCTGGTGCTGCCACACTTGCTACAACGAGAGAAGGGATGCAACattccgaccaatcagagcacaaaACACACTCTTGATCATGCCTCTGGTGATCCCTGCCCGATCCTCACACATGCGCAGGTTTGCGTGTGCAaggatgaggtgtgtgtgtgcgaggaCGAGATGACTTCGTGCGAGGAGAGAGTGACGATGCAGGTTGCGGCTGTGCAGTGGGACAAAGTGGAGAGGAAGAACCGAGTTCTGGAAACACACTCCGCTCTTCTGATGCTACAAAAACTGCTGATGCAGACAGTGTCACATGCACTTGTGGGGGAAGAGCTCTCAcacgccatacacacacacagtctgGCATTAGAGGAGGCGGAGCTACTATTGCAGAAGGAGGAGTCTGAGTGGGAGCGGTCCATGGATGGGCTTGGTCTCAATAAACTCTTGACTCCTGATGAGGAAGAATTGTTCCGAGTAAACGCAGAGTGCACGATCACTGAGTGCCTGCAGGAGGCACTGTACAAGAGacagcagctcacacacaccctcgctGAGAGgttgaGGATGGAGATCAGGAGGCAACAGGTGATGGAGGATCTGAGGGAACAGCAGGAGCTAAAGAGGCTTTACACACATTTTGACCAGgatctCCTCCTTGTTGCCTTGCTCGTCAAACTCAGTGGTGTTTCAGAACCAGTTCTCCAGCAGCTCCTGTGCCTCCTGCTGCCTACACAGCCTGAAAGAGAACTACaatcactcatacacacacttgcacctAAAGAAGgACGGATATTAGGACCCTGCTGCCATCTGGTGGAAAAACTGAGGAATGATGTAATCAGCAAACACGTGTCACCtggctctcacacacacactcacagAATGctgaagaagaagcagaagcttGTAGAAAAGCTCTTCTCCAGATCTCATGCAGACAATTTAGGGCAAAAcccactgccagcaagcagcCAGCCAATCACTGCGCCCGCTACACAAAAGGAAGACGCTTCTACTGTGGTGGGAGAGACCACGCTGGAGGGGGTGGAGTGTACAAGCCATGCTGGTGAAGTGGAAAAGGCTGCAGGCAGTGAAATGGCAGAAGAAAGACTGTTTACTGTCCGCTgtgcaccaggaggaaacctggaaaacacacacgtgggacatactacacacactacacatacaccacacactgcagacGCATCACACGTGTCACACAGtcacaggaagaggaggaagtttaagtttaaaaagGGAGCAGTGGCTCCTCAAGAGCAGACATGATGAAAGGAGAAACCTAGATAAATGTGagacaacagagagaaagaaatggcgATTATGGAGACATAGAAGGTGAGGTAGGGAGACAAAGGTGGAGAGGGGAagggagagagacggagagtTTGGTCCATTGAGCATTTACAAGGAATGTTATTTCCGAATCCTCCCGCAGATGTCTCCTGTCTCTCATATCATTCCACAGACATTCACTTTCACTCAGCAACTTAATAACGCTGCACAAGCAGTTCTATTCATCTAATCTCACgttacaattaaataaaatgtaagtgtTTAGTTGGAAATGGCTATAATCACAGACAAGCGACACTAAGCACAATTAAAGGCTTgagagctgtgatttgattccgCACGTTAacgtatttccttttgaaacaagAGGACGGAGTGTTCCTTGACTCAAAGGCTTGACACATTTCCCACACAGAGAACGTTATTCGAGATAAGCCACGCCTCCTGCTGAATCTAACCAGACTCGAGAGTGGCTTAGCAAACTGGCTAAATAGGAGACCTACACATTTTTAGCTGCGTAGGATTTCTCACTGCCAACTTGCCCATTGTGACTGTCATGTTCCATGTACACATACCAGCTCTAATCACAAGGTATTGCTTGAAAGGAGAATAACATACAGGAAGCTGCACAACCACAACTGCATGAATGACCCATGTTTGCAATTTGTTGTGCCTAGTTTATTTACAGGAGCATGACAAATgtgttctagagagcatttgattAGAAACCAATTGAAcaagcaccaaaaaaaaaaaaaaacttgctgacaaaacatttttatatactgtCTTATTTACCGTATGCACCAAGAGACTCGTACAAAAAGCTCTAAAACATCCAGTTTTGAGTTGATGGCGCTTTTAAGCAGACAGGTGTTACTATGCTGCTGTGTGATTTCTTAAAGGACTACCTTTTGtagctgtaataaaatcatttcctaTCTGTATTGTGTGTAAGTAATTATAGATTTAGTGAGTAATAAGCATGTAACAAGCATGTAATTACGTGGGTTACAGTAGCTCAAGCTCCAGCTGGTCGTTTTCACTGATCACATAGACCTGATCATCCTGTTAGGGTTTATTTTAGTGATGATGATCTGTTTACTGTCAGTAGAGATCCCCATTATGAGTGCATTATGGCCAAATTTTGACTCAGCCTGTttatctcattaaaaaaaaaacttatttgcTGCATTTATAGCCTACAATGAGTATCAACATTCTGTTACGACTTTCACTAGTCCACTCTGTAGGTCACGTTCTGCACTACAATAATTTTACACTGGCATCTCCACTATGCTATTGAATAAAACTGatttgtaataaatacatttactctGTTTCTAAA

Function

GO: NA

KEGG:

id description
K19608 EVC2; ellis van creveld syndrome protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253387 lncRNA upstream 21449 19912139 ~ 19912375 (+) True G213984
TU253382 lncRNA upstream 22092 19873076 ~ 19911732 (+) False LOC113528458
XR_004579341.1 lncRNA upstream 141165 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 218265 19698004 ~ 19715559 (+) True G213864
TU253224 lncRNA upstream 226974 19664704 ~ 19706850 (+) True G213834
TU253415 lncRNA downstream 18994 19968008 ~ 19970156 (+) True G214012
TU253526 lncRNA downstream 122681 20071695 ~ 20181878 (+) False G214098
TU253520 lncRNA downstream 192401 20141415 ~ 20144597 (+) True G214098
TU253523 lncRNA downstream 192401 20141415 ~ 20152693 (+) False G214098
TU253575 lncRNA downstream 264392 20213406 ~ 20214427 (+) True G214144
XM_026917018.2 mRNA upstream 22949 19908167 ~ 19910875 (+) True LOC113528458
XM_026916954.2 mRNA upstream 32840 19888315 ~ 19900984 (+) True mcm7
XM_026915985.2 mRNA upstream 48269 19860406 ~ 19885555 (+) True LOC113527852
XM_034310034.1 mRNA downstream 14706 19963720 ~ 19996933 (+) False zbtb49
XM_034310033.1 mRNA downstream 34609 19983623 ~ 19996933 (+) True zbtb49
XM_026917103.2 mRNA downstream 34609 19983623 ~ 19996933 (+) False zbtb49
XM_026917102.2 mRNA downstream 34851 19983865 ~ 19996933 (+) False zbtb49
XM_026917105.2 mRNA downstream 51944 20000958 ~ 20002680 (+) True drd5a
TU253379 other upstream 23659 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 620606 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 788584 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 1013952 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 1013952 18914726 ~ 18919872 (+) False smim22
TU253418 other downstream 29300 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 73495 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1391402 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 1392233 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 1392233 21341247 ~ 21348829 (+) False hopx

Expression Profile