RNA id: XM_026916794.2


Basic Information

Item Value
RNA id XM_026916794.2
length 4972
RNA type mRNA
GC content 0.51
exon number 20
gene id cramp1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7389075 ~ 7407151 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCTTGAGACTGGTTCAACATCTCTGATGGATGATTTGTGCGGATTTTCGTTGCATTTTATAAATTGTGACTTGTCATAAGAAAGCATCGATTCTTAAACTTATGATGACGTAGTTAACAACAAAGTCCAGACTTGTGGAGTGAGGAGGTGCTCAGGAGGATTTGGTGTCGTCTTTGTGGTACAAGTCGTAAAAAAATGTGGAGGTCCGACCCCACAGCGGTTGATTTGCCCCTTTCAGATGGTGAACGTGTATCTGTGGTGTAGATAAATGTTTCTCGTGGTTCTGTCTGGGAGTTTTTGAGTTGGACTTGCTGTTCCTGCGAGACGAACAGTTGAGCTGAGCGGAGTTGAGGCTTGAGTCGAGGCGGCAGCAGCAGCGAGGAGAGGACGAGTCCAGACACACGACCTCCTTTCTCGCTTGGAGAATATGTTTAAATTGCTCGAAAATTGGTCTCCAAAATCTTCGGACTCATGGTGAAGAGAAAGAAGATCTCGTCCGCCGCTGAAGAGCTGGAAAATGGGATGACAGTGGGCCAGCAGGCCGGCTCGGGAGTCGAGGGCTCGAACAAACCTATCCGAAAGCTCGAAGGCTGCGAAGAAGAGGAGAGCGCGGAGCGGACACCGAGCGAGCAGCCGAGCACAAAGAGGGACGGTGAGGAAGCGCCGAGTCCGTGCGCCGCGCTCGCCTCCGGTTCATCACCGAACCCGTCCGGAGCGCAGCCGAACCCCGCGGGCCTGGGCTCCCCTCCGGCCGCTCACGACCAGCATCACTTCCTCCGCTCCAGCGTCCGACCTCCGAGCAAACGGATCCGCAAAGACGGGCCCGCGGTGAACGGACACAGCGGCACCAAAACCAAAGGGAGTGATGCGGTTCCTGCTGTGGCTGCATCAGGCAGTGCAGGCTCAGGAGGAAGTGCTGCAGCTGGAGGGAGCTCTCGCTCTGCCCCCAGGAGCCAGGGCCCGGTGGAGAAAGATGAAGGAGGGAATCAAAAGCGTGCACGCAGACAGTGGGAGTCTTGGAGCACTGAGGACAAGAACTCATTCTTTGAAGGACTTTATGAGCATGGGAAGGACTTTGAAGCCATACAGAATAACATTGCTCTGAAGTATAAGAAGAAAGGCAAACCTGCTAGTATGGTGAAGAATAAGGAGCAGGTTCGCCACTTCTACTATAGAACCTGGCACAAGATCTCCAAACACATTGATTTCAATAACGCGTATTCCCGAGTGCTGAAGAAATCCTCACAGGAGCTCTATGGACTCATATGTTATGCCGAGCTCAGGAAGAAGGTTGGAGGCTTGATGGATGACAAGAATGTGGCCAAACTGAATGAGCTCATCATGCAAGGgGCCACCACGGTTCGCTCTAAAGGCAGGAACCTGAGGATCAAAGCCCCCATGTGTCGCGCACTGAAGAAACTGTGCGACCCAgatgGAGTGAGTGATGAGGAGGACCAGAAGCCAGTGCGGTTGCCACTGAAGGTTGCCTTGGAGCTGCAGCCGCGTAGTAACCACTCATGGTCTCGGGTTCAGAGTCTGGCCCATAATCCTCGCCTCAGGATGGTTGTGGAGTTGCACAGGAAAGTGTCTAGTCTTATCGAGTTCCTGAAGCAAAAATGGGCTGTTCAGGACCAGCGAATTCTTAAGAGTCTAGCAGAGCGGGAGGCTCTAGAAGGTGTATCCCTGCCTGGTGACTCGGAAGATCTGTTTCTGTATCCAGCAGAAAGCAGCACAGTTACCGTGTTACCTGGAGTAGCACGTGTCGTTCACTCCAAGGCCTCCTGCACTGTGCACTGGCAGGAGACTGGGCGTGGTCGCCCGGGTGTAAGAGACCTGCCAGCAGCCCAGATCCTAGGGATTCAGCCTGTCCGAGGGACGGGAAAACCAGGCAAGGGTGCCATTGGAGGTGGAGACATAAAAAGAGCCGATGGACAAGTACCTGAGAGTTCAGAAAGCAGTAACTGCACTCCGGGGGCAGAGAGCACTTTAAACACGGCTCCTAACACTACCACTCCTTCTGTCACTCCAACTTCTACAAGTCTGCTGCCTTTCCCAGGACAGGAAGGCAGCGGGACTGGGACTCCTGATTCTTTGGGCACATCTCAGTCCCAGACATGTTCTAGTGGAGCGAGTAAAGACACTGTCAGTCCAGGAGAGCCCATACTGAcagaccacagcacagagactccTCTAGCAGTTGGGGCCACAGCAGATGGAggtcttcctcctcctcctcctccacctcctcctccacctgagCCCCCAGGCCGAGTGGAGGATGCAGCTGCAACTGGTCGCTCGCCGCAACAGATCCGTGAGGAGGGCTGGAGCTCACAGGGCTCAGAAAACGTCACTCTAGCTGAACTCTACCTCATGATGGGCAAGCCTGGAAAGCTGCAGCTAGAGTATGAGTGGCAGCCCAAGCCCCGCCCTTCAGCCCTGCCCACCACTCACAACGTGCTTCGTTGCCTCCTAAGACTCGTCTCCTCAGAGGTCAACCCCAAACCCGCTTCAGACATGTGTTCAGTAGGGACATCTCCCATCAAGCCTGGTCAGGAGGAACAGTCTCTGACACCTCCAGGCAAAACTCAGGCTGTGGGAACTCGCAGCCCCAGCTGTGGACGGCAGCAACACACAGCACGCACCAAAACACTGCCTAATACAGCTGGCACAGGTGGCCGGAATCTACCACGTTCTCTGTTGGTTTCTGGCAGTGATGGTGATGGGGGTGTGTTTGCTGTTCCAACGACACTGCCACCTAACAGCTCCCGCCACTTACGGATGTTTTCTCCCAATAAGGAGGCAGAGTTGGCTTTCCGCCAGCAGCTGGACTCAATCAGTtcAGATATTTTCTTCCACAAGCCAAGGAAAATAGGAAGGGGCCGTCCACTGAGGAAGCCACTTGTTGTGCAGAGAACATTGTTGCCTCGAACAACAGGAGATTCCTCCCAACATGTGTGCTCTTTCTCAATTCTCTCCAGCTCTTCAGCTACTGGCACTGGTTCTTTTCGGCCCATCCAAAGCCGGCTCTCATCATCCCGACCCCTTGCACTTAAAGCCACTTCCACTACAATAAATACTGCTTCTTCTAATCAACTGTCCAGTGCAATTGACCTGGCAGCAAAATCTGCAGGCATTATCCCAGGAAGCCCGTGTCGAGAAGTAGAGGCCACTGCTCTGGAGGCCCCGGTTCTAGAGTCGAGCCTTTTGCCACCTGAGGCTGCCACACCACCGGCACATTCTGATCCTGAGCCTGAACCTGAGCCCGAGCCCAGTTCTGAGCTTCTGCAGCAAGAGACAGGTTCTTTGCAGAATGGGGTCCCTCCACCATCTCCAGGGGGTGGAGACTCCCTACTGGCACCTCCTAGTGTTGCTTCCCTGTTGGACATCTCACTCCCTGGCCCTCCAGACGAATCCCTTCCTCCTGGAGAACCTCACACTCACATCAGTGACTCCATTATTGAGCTTGCCATCAGTTCTGCACACTATGGTGAAGGATCGtctctttctcctccaaagCTCAATGGAAGTGACAGGTCTAAGCTTCTCCCCTCCCTCCAGGACAGTCCCGGCCATAGCTGGATGCCATCTCCTATGCATGATCCCCAGTGGTACCCCAGTGACTCTAGCGACTCGACTCTGGGCTGCCTGCTCTCAAGTCTGGTGTCACCAGATAAAACCCGAAGGACTGTCCTCACCCCTGCAGGGCCCTCCAGTGGTACAGCCTTACTTGGCCCCAGCCTGCTTGATAGTAACTCCCATGATTCTTTTCAGGCCCGTGGCCTGCCTGACGTTGTTGAGGTGGATAATCAGCTGGCCTGCATGATGAGCGAGAACAGCGTCGACTACATCGCCCGCTTCAACGACCTTGCCCAAGAGCTGTCTGTCTCCGAGACGAGCCTCCCTCCTCCATGAGTCTGAGGTGAAAGGTCAGcatgaggaggaggagcttctaACACCACCACAGCGCTGCGGGAGAACTCCAGTCCGTCAGTCAGAAGAAAAGAACGTGTTTATGAGATTCACCTTGTTGGAAGTGCAATAAAGACTGCCGTGATCCTTGATCATCAGGAtcaagtgtgtgtatgggtgtgggTGCCTGGCCATCATTTTGTGGTGTGCGTTTCACGAGCCACACTTGGGCCACTTTTTAAACGAATTTGTTTACAAAGCAACCTCATGTATAGAAATTTGCCATATCAGAACAAATATTTCCTCCAGTTCTGTTCACTTCCTTTTGTCCGTCCTACTCTGTTCTGTGTATACGAGCGTGAGCCAAGGCTGCTGCTCGGTTGTTTTGTCATAgtgacattttttcttcattgatACTTTTGATCTGTATTTGATCATCCTCCTGAAAAAGCCATAAGCGTGTGTACATAGTACACAACATCCATGTACAGTCTGTCTTCATAATCTGTGGCTTCATAATCTGACCGGCTTTGCCAGATTTAACTTAATTATCATAAAACACTGCTAGAAAGGTTGTTTTTCATCATGGGAAAGACTAGAACTAATTGGAAAATCCTCCAACACTAACAAAAAGCTAAGCAAAAATAAACTTGGCTGTATTTAAGtagaaaatgtatattaaacTATTACTTCAAGACTCcctaaattaaataataaagtcatTGATTGCCCTACAGTTTGATGTTTGACCTTCAACACTACGTTTTATTGTATGCAGTTTTACTGAAGCCAGCGATTAGATGGTTGTGAGCCTTCTGTTTGTGATGGAATGaatgtttttgatgtaaataGACCATAACAGATTCAAGCATTGACTGTGCTTTtataacatactgtaaattatttgggttatttattaatttacatgttgcaactgtgttttctttttcttttttattttagaggGCATCAAAGCTTATTGCAGTTGTTTTAAAGATTTCTGCGTTTGTATAAAAAAGGGGTTTTATGCCACCGTGTAAATACAAATTTCCCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245299 lncRNA upstream 1601 7386016 ~ 7388543 (+) True G207140
TU245255 lncRNA upstream 68214 7319138 ~ 7321930 (+) False spsb3a
TU245258 lncRNA upstream 71784 7318027 ~ 7318360 (+) True G207111
TU245223 lncRNA upstream 93171 7294485 ~ 7296973 (+) True G207084
TU245151 lncRNA upstream 331325 7054386 ~ 7058819 (+) True G207025
TU245320 lncRNA downstream 32926 7440077 ~ 7440281 (+) True G207155
TU245322 lncRNA downstream 35918 7443069 ~ 7443753 (+) True G207157
TU245323 lncRNA downstream 37672 7444823 ~ 7528738 (+) True G207158
TU245526 lncRNA downstream 157152 7564303 ~ 7567813 (+) True G207309
XR_003402956.1 lncRNA downstream 278900 7686051 ~ 7691669 (+) True LOC113528563
XM_026916149.2 mRNA upstream 55908 7328120 ~ 7334236 (+) True nme3
XM_026916786.2 mRNA upstream 63050 7323960 ~ 7327094 (+) True mrps34
XM_026916980.2 mRNA upstream 68179 7309207 ~ 7321965 (+) False spsb3a
XM_026916038.2 mRNA downstream 395 7407546 ~ 7416796 (+) False dhrs7b
XM_034309664.1 mRNA downstream 409 7407560 ~ 7416796 (+) False dhrs7b
XM_026916039.2 mRNA downstream 495 7407646 ~ 7416796 (+) True dhrs7b
XM_026916612.2 mRNA downstream 76630 7483781 ~ 7497533 (+) True LOC113528203
XM_026917203.2 mRNA downstream 453073 7860224 ~ 7880064 (+) True itga2b
trnac-gca_21 other upstream 90460 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 117613 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 274209 7108178 ~ 7115935 (+) False LOC113528597
XR_003402939.2 other upstream 293465 7084441 ~ 7096679 (+) False eftud2
TU244415 other upstream 1129287 6254468 ~ 6260857 (+) False LOC117598831
TU245701 other downstream 446040 7853191 ~ 7853509 (+) True G207480
trnas-cga_1 other downstream 601035 8008186 ~ 8008267 (+) False trnas-cga_1
XR_003402909.1 other downstream 1489467 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 1654414 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 2537155 9944306 ~ 9979954 (+) False rapgefl1

Expression Profile