RNA id: XM_026916800.2


Basic Information

Item Value
RNA id XM_026916800.2
length 3300
RNA type mRNA
GC content 0.49
exon number 23
gene id tbl3
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10943238 ~ 10962840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCGTAGATAACTGATGTACAATagatgtataaatgaataaacaacagtatattaaatataataaaactttaaGCGTGGAATAATTTGTATAACGCCTCGTCAGGAAAGTAAATTGCCTCGTTAAGAAGCGAACGGTTTTTGGTATTTGTGTGACGTCATATTTGTGCGACGCTGCCCAGTCGGAACACATGTACACTGCGCGAGGGAGAATGTGCTCAGTTGAAGTTGTATTATTGTAACttaaaataaattgataaataaataaaactacaaagGTCTGAAAAGGTGTGGCCATGGCAGCCAACACGCTGCGGTTTAAAACAAACTATGCTGTCTCCAGCAAAATCGAGCCGTTCTACAAGGGAGGGAAAGTACAGATAAGCCATGATGAAAAGCACATCTTTTGCACCTCTGGGCCACGACtcaacattttgcagatttccACTGGCAAAATTGTTCACAGTATTGAGCAGgaTGATCAGGAGGACATCACCTCGTTTTCTCTCAGCCCCGATGATGAGATACTGGTGACTGCCAGCAGGGCGCTGCTGCTGAAGCAGTGGGACTGGAAGCAAGAGAAGTGCACTCGCTCATGGAAGGCGATTCACAACGTGCCTGTGGCCAGCATGACGTTCGACTGCACCTCTACTCTTCTGGCAACTGGGGGTTGTGACGGCACTATAAAGCTGTGGGATGTACTCAAACAGTACTGCACACACAATCTGAAAGGTTCATCCGGAGTTGTTCAtttggTGCAGTTCCATCCAGACATCAGCCTGCTGCAGCTCTTCTCTTCCTCTATGGAGTGTGGAATCCGCATTTGGGATCTGCGCACCAGCAAGTGTATTTGCATTCTGGAGAGCCACTTCAGCACAGTCACATCACTGGCCTTTTCTCTCGATGGTCACACTCTGATCAGCTCTGGGCGAGACAAAATCTGCACAGTGTGGGACCTGAAAGAGAGGAAAGTAAAGAGAACCGTTCCTGTGTATGAGgCTGTGGAGGGAGTAGTCATTCTCCCAGAAAATGAGGATTACTCAAATCTTGGTGTGAAAAGTAAAGAGCTACACTTTGTCACTGCTGGCACTAAAGGTGTGCTGAGGGTGTGGGAGTCGAGCTCGGcacggtgtgtgttcacacagaCGCTACCGAGCGCTGCGGTGTCTCAGTCAGTGCAGGAAGACGGGGATCCTCTTAGCTTGCTTTACTGCCTGTTCCTGCCCCTTTGCAACCGTCTGGCTACAGTCACCGCCGAGCACAACATCCTGTTCTACCAGCTGCCCTCTCTCACTGTGCAGCAGCAGTTTGTGGGCTATAATGATGACATCCTGGACGTGAGGTTCCTGGGAAAAGAGGACAGTCACATAGTAGTGGCCACAAACAGCTCACAACTCAAGGTGTTTGAGCTGGCCACCAACAGCTGCCAAATTCTCTACGGACACACAGacacTGTCCTGTCACTGGATGTGTTCAGAAAACGTTGCATGTTTGCAAGCTGTGCCAAGGATAATTCAGTGCGGGTCTGGAAGATGGACCCCATGTCTGGTCATGTACAGTGTGTGGCTCAGGGCCATGGCCACTCCAACGCTGTGGGCTCCATTTCCTGCTCCAGgtTAAAGAAGGCCTTCCTGGTGTCTGGAAGTCAGGACTGCACTATTAAAATATGGGATCTGCCTGATATTCTTCCTGGTCTGGGCGAAGAGCCAGCCCAGCTTACTGCTCGGATCACTGAGAAGGCCCATGATAAAGATGTAAACAGCGTGGCTGTCTCACCCAATGATAAGCTGCTAGCTTCTGGTTCTCAGGACCGCACGGCCAAGCTGTGGTCTCTGACTGACATGAGCCTGCTCGGGGTGTTCCGAGGTCATCGCCGAGGCATCTGGTGTGTGCACTTTTCCCCTGTGGACCAAGTGCTGGCCAGTGCTTCAGCTGATGGTACAATCAAGCTCTGGGGCCTTCATGACTTTAGTTGCCTCAAGACGTTTGAAGGACATGATGCATCTGTGCTGAAGATAATATTTGTCAGCAGAGGCACTCAGATAGTTTCTGGCGGTTCTGATGGCCTTGTGAAGCTCTGGACCATTAAGAccaatgagtgtgtgaagacCTTTGATGCTCACCAGGACAAAGTGTGGGCTCTGCACGGCAACAGCAGCGATGATCTGATAGTGACCGGATCTGCTGACTCCAACATCACTGTGTGGAAGGATGTCACAGAGGAGGAGCTAGCAGAGGAGCAGGCAAAGCAAGAGGATCAGATTCTGAAGCAGCAGGAGTTGTCCAATTTGCTTCATGAGAAGAACTTTTTGAAGGCTCTGGGTATAGCCATCTCACTGGATCAACCTCATACTGTGCTTCGAGTCATCAAAGAAATCCAGCAAGAGGAAGAGGCTGGACAGCATCTGGAGAAAACCATCCTTAGGCTACGGCAAGACCAGAAGGAGTCTCTGCTGCGATACTGTGTGGTGTGGAACACGAACGCACGGAGCTGTCTGAGTGCCCAGGCAGTGTTACAGGTGCTGCTGACTCACCTGAGCCCAGACGAGCTGCTGCAGTTCCAGGGAGCGCGCACTCATCTAGAGGGCCTCATCCCTTATACTGAGAGACACATGCAGAGGATTGGCCGTATGCTCCAGGCCTCCATGTTCCTGGATTACATGTGGCAGAAGATGCGAGTGACGGGAAGCAAAGACAGTGGGGAACTACAGGGAGAAGAGATGGACACCAGTCCTCAGGACATATTCATACTAGACAGGCAGCCAGGGCAGCAGAAACCGAGTAGACAGCGGGAGAACGCCGACAATAGCGATGACGTGGAGGAAGCGGACAGCAGCGAAGAAAACTCAGAGAACAGCGACAATGACAGTGTCAGTGCCTTGAAAGGTGTCAGCACCAAAGAAAGGGGTGTGAACGGGGTCAAAAACAGGGGTCATGTATCCAGTGATGAGAGCTcagatgatgaggatgatgtgGACATTTCCACAGTTGCTCCTGCCAAGGCTGCAGGGGCCACTTCCTGTATTCTGACCAACGCAAGCTGATCACGCTGATCAGTAAGGGATCAAAGTGTCACAGTCTCTGTATACAGTCCTGAATGGTGTGGCTGTGTTGAACGAGAGCAAGCAGGAACCAGGTCTCTCTGTCAACAGCTAGAATTAAGCTGTACGTCATTTAATTGTATGTACTATTCTAAAGGACATGCTTTGCCTTTTTATATCATGTTCCAGAAAGAAGAATCTTGTGCTCTTTATTGTCATAGTCATtgaagattttaaataaattcactgGTTTAAAAAGG

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0006364 rRNA processing biological_process
GO:0048538 thymus development biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14555 UTP13, TBL3; U3 small nucleolar RNA-associated protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247589 lncRNA downstream 309088 10633535 ~ 10634150 (-) True G208998
TU247571 lncRNA downstream 424291 10518342 ~ 10518947 (-) True G208980
TU247554 lncRNA downstream 492698 10447736 ~ 10450540 (-) True G208964
TU247529 lncRNA downstream 601016 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 652353 10221710 ~ 10290885 (-) True G208771
TU247803 lncRNA upstream 126173 11089013 ~ 11144984 (-) True G209189
XR_003402938.2 lncRNA upstream 255819 11218659 ~ 11221378 (-) True LOC113528410
TU248077 lncRNA upstream 255828 11218668 ~ 11221366 (-) False LOC113528410
TU248181 lncRNA upstream 426120 11388960 ~ 11389231 (-) True G209529
TU248190 lncRNA upstream 437882 11400722 ~ 11401423 (-) True G209538
XM_026916143.2 mRNA downstream 44698 10872034 ~ 10898540 (-) False LOC113527942
XM_026916142.2 mRNA downstream 44698 10872034 ~ 10898540 (-) False LOC113527942
XM_026916141.2 mRNA downstream 44698 10872034 ~ 10898540 (-) True LOC113527942
XM_026916281.2 mRNA downstream 74154 10847701 ~ 10869084 (-) False srebf1
XM_026916280.2 mRNA downstream 74155 10847701 ~ 10869083 (-) True srebf1
XM_026916997.2 mRNA upstream 46447 11009287 ~ 11011550 (-) True rcvrna
XM_034309798.1 mRNA upstream 60832 11023672 ~ 11025804 (-) True LOC113528015
XM_034309799.1 mRNA upstream 60832 11023672 ~ 11025804 (-) False LOC113528015
XM_034310022.1 mRNA upstream 111677 11074517 ~ 11145832 (-) True baiap2a
XM_026916572.2 mRNA upstream 111677 11074517 ~ 11145831 (-) False baiap2a
XR_003402902.2 other downstream 472720 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 558118 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 1211988 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 1468760 9466480 ~ 9474478 (-) False copz2
TU246804 other downstream 1523654 9413601 ~ 9419584 (-) True prr15la
XR_003402978.2 other upstream 469670 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 573720 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 603170 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 737066 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 792985 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile