RNA id: XM_026916808.2


Basic Information

Item Value
RNA id XM_026916808.2
length 2551
RNA type mRNA
GC content 0.44
exon number 2
gene id tlr1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21181413 ~ 21184850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTACTAAAATGACATGAGATGCGCTACTGTTAGTCACTGTCGCCCATTCTGCAGAACGTTCAGCGGAACAGATAACGCAGGATTCTTCCCGATAATACTTGCACTAATGCAGGCTCAAGGGCTCCCCTGGTTATCAGTGGTGGTACTCCTGGTGTCTTTGCCACATTCCTTCTTGCTGGACATGGAGACATTTATTCTTGACTACTCTTCCAGAAACCTTTCTGCTGTTCCCCCCGATCTCCCACCATCTATTCAATGCCTAGATCTCTCTCAGAATCGAATTTTGACCTTGAACAAACATGACTTCCATAGAACACCCAGGCTCCATTTTCTCAATCTCTCCTGGAACATTCTGGAAGATATACACCAAGACACATTTATTTCCACTCCTCTTCTGGTAACACTGGATTTGTCCCACAACAGACTGAAAAAGCTGTCCCACCAACAATACCTGCTGCAAGCACAAAACCTACAGTACTTGGACTTGTCATCCAACTTGTTTGCAGTAATGGCACTAGGGGGTGAGTTTCCCAAACTCACAAAACTTAAGTGGCTTGGTTTGAGTGCCAGGACTATTCAGAACAACAACTTTGCGAACATCTCTGACCTCCATCTCCAAACTCTCTTCATTCAGGCTCAGAATTTGATGGGGTATGAAAACGGAAGTCTCACGGGTGCAAAGGCAGACAAAATTGTTGTCCTAATGTCTAATAATGTATTTGATCTCCCAGTAATTGCTGACGCTTTGGCATCCTTTAAAGAAGTAGAGCTGAGGGGGTTACACGATCCAGAGGACTTCCTTGGAATACTTGCGACATGCCAAGTACGCATTCAAACAGTTAATTTACACTTATCTTCTGTTTGGAGTACCTGGAAGGTAATAACAGCCCTTACCAACAGGACCTTAATGTCATCTATCCGCCAGTTTAGTTTGTCTAATCTAACCCTTCATGATATGATGGGACGTTATTTTGTGGTCCAAGGCTACTCTTTAGATTCTTTCAGTATTAGACAGGCATCAGTGACTGTGTTCCTTTTTGATCAGCAGAGTCTATACGACTTCATCATCAGTATACCTGCAAGAAATCTAACTTTTGCCCAGACACCAATAGTCCATATGACCTGCCCAAAGGTTGTTAGCATGATACAGATGCTTGATTTATCTGGCTGTGTCCTAACTGAAAAAGTCTTCAAAGGTCTCCATGGGGAATGTAACACTTTGATCAATCTGGAGGTATTGGTCTTGAAGGGCAATAACCTTAGACAGTTGATGCCACTGACTTCAAGAGTTCAACTAATGAGCTCTTTAAGACATGTGGACTTTAGCCAGAACTCACTGACATATGAGGAAACTCAGGGTGGATGCACTTGGCCTTCTAAAATCACCCACTTGGATTTATCTTTTAATGAGTTTGACCAGACTGTTTTTAAGTGCTTGCCGAATGCTCTAGTCAATCTCAACCTCCAGAACAACCATATCAGTGCAATTCCAGCAAATATTTCTGGTCTGGACTCTCTCAAAATTCTAGATCTTACGGCAAATCGTCTGCTGGATCTCCCAGACTGCCTGGGGTATCCAAAATTGCAGAAACTTGTGCTACGTGGCAATTTCCTTCATGCACCATCAACAGGCTCTCTCAAGACCTGTTCACACCTAACTGTAGTGGATATCAGTATGAATCCCTACATCTGTACCTGCCCTTTGAGAGAATTCACCAACCTTATTGACGACAAGGGTACACTGGGTGGCTCAAATTCTTGGAAGAACCAAAGGATTACCGTTGCTCATTGGCCAGATGGGTATCAATGTAGTTACCCGGAGTACTGGAGAAAAGCAATGCTTAAAAACTTCAGTCTGCTTGAGATCACCTGCAACGCCGGACTGCTGGCAGTAACCATTTTGCTCCCAGCCATAATTTTGGTCATTACTGTAGGAATTCTATGCCAACAACTAGATCTTCCTTGGTATATGGGCATGATTTGGAAATGGACTCGTGCAAAGCACCGTGCCCGAAGTTCCCAGCAACGACCAGAAGATCTTGAAGGAGTACGCTACCATGCTTTCATTTCCTATAGCCAAAGAAATGCCAACTGGGTTATAGATCAACTCTTGCCCAAACTTGAAGGTGAGGACTCTACGACCCCAAATGGACTGAGGGTTTGTCACCATGAGCGAGACTTCATCCCGGGAAGGCCAATCTTAGACAACATCCTCCGGTGCATAGAACAAAGTAGATGCTGCGTCTTTGTGCTGTCCTCTCACTTTGTGCAGAGTGACTGGTGTCACTATGAGCTGTACTTTGCAAGCCACCAGTGGATAACACGAGGTATGGACAATATCATTCTCATTCTGCTAGAGCCATTGCCTACATATCTTATACCCTCTAAGTATCACCAGCTAAAGGCAATGATGGCCAGACGCACTTACTTAGAGTGGCCCCAGGACAAAGCTAAACAGAGAATGTTTTGGGCAAACCTTCGTGCGGCACTGCAAGCGGATCTACCCGATTCTGTTGAGAGAGAATGGGAATGAGAGGACAAAAGAATTC

Function

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05398 TLR1, CD281; toll-like receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254221 lncRNA upstream 18109 21162900 ~ 21163304 (+) True G214723
TU254190 lncRNA upstream 23325 21144820 ~ 21158088 (+) False G214694
TU254189 lncRNA upstream 23325 21157282 ~ 21158088 (+) True G214694
TU254148 lncRNA upstream 157326 21011774 ~ 21024087 (+) True nudt6
TU254040 lncRNA upstream 254735 20908828 ~ 20926678 (+) True G214548
TU254231 lncRNA downstream 416 21185266 ~ 21186303 (+) True G214731
TU254255 lncRNA downstream 13692 21198542 ~ 21244785 (+) True G214753
XR_004579331.1 lncRNA downstream 172000 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA downstream 172000 21356850 ~ 21359059 (+) False LOC117598756
TU254313 lncRNA downstream 183174 21368024 ~ 21368228 (+) True G214798
XM_026916764.2 mRNA upstream 99399 21047261 ~ 21082014 (+) True LOC113528291
XM_026916765.2 mRNA upstream 99399 21047261 ~ 21082014 (+) False LOC113528291
XM_026916767.2 mRNA upstream 99399 21061914 ~ 21082014 (+) False LOC113528291
XM_034309853.1 mRNA upstream 99399 21061916 ~ 21082014 (+) False LOC113528291
XM_026916768.2 mRNA upstream 99399 21061916 ~ 21082014 (+) False LOC113528291
XM_026916778.2 mRNA downstream 21609 21206459 ~ 21226848 (+) True f8
XM_026916148.2 mRNA downstream 103630 21288480 ~ 21293794 (+) True LOC113527948
XM_026916510.2 mRNA downstream 116793 21301643 ~ 21328754 (+) True sec24b
XM_034309781.1 mRNA downstream 156339 21341189 ~ 21348917 (+) False hopx
XM_026916224.2 mRNA downstream 156447 21341297 ~ 21348917 (+) False hopx
XR_004579430.1 other upstream 1105005 20022509 ~ 20076408 (+) False LOC113528520
TU253418 other upstream 1200033 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 1228127 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 1271248 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 1868195 19301355 ~ 19313218 (+) True gng13b
TU254301 other downstream 155566 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 156397 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 156397 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 156397 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 156716 21341566 ~ 21348829 (+) False hopx

Expression Profile