RNA id: XM_026916819.2


Basic Information

Item Value
RNA id XM_026916819.2
length 4064
RNA type mRNA
GC content 0.47
exon number 19
gene id arhgap17b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12158703 ~ 12190070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCAGTGTGCGTCTCGCGGTGCCGTAAGCTCCAGCAGTAGGGAAGTGAGAAGCACTTCCTACTTCCTCACGCACAGTTGTTCAAACGCTGTCGCTCAGAGGGCCGAAGGCGGAAAAATAATGCCGTTCTGAAAAACGACGCGGACAACTTTTAAGTGTGAAACAGCCACCCATTTGAGGAAGGGCCGCAGGGAATGAGCGTGGAGGAGAGCAGCTGCGGTTTGAAGCTAGCCGAGCGGCTCGGATGGCTGCGCGCGTGCGGAGAGGAGCTGAGTGACGAGGCGACTTCACACACCGGGCCTCGCAACTTCTGAAAGTTGGACACGGCGAAGAAAAACAAGGCGTCGAGATGAAGAAGCAGTTTAATCGTATGAAGCAGCTCGCCAACCAAACGGTTGGAAGagcgGAGAAAACAGAAGTCCTTAGTGATGACCTTCTACAGATTGAGCGCCGCATGGAGATGGTGCGGTTGGTCTCGCATAACACGCACAAGAAGATGGTGTCATGTCTGCAGGGCCATGTTGGAACAGACTTGGAAAAGAGACACAAAAAGCTGCCTCTGATGGCCCTCTCTCAGGCCATGGTGGATGGAGGGAGTCAGTTAGGAGAAGAGTGCATGATTGGGAAGATGATGGAGGTGTGTGGTGACGCTGAAAGTAAGCTCGCCTATGAGCAGAGCCAGCATGAAGTCCAGCTCGAAAGGGAAGTCCTGGACCCACTCAACCAGCTAGCAGAGGTTGATATTCCCAATATCATGAAGCAGAGAAAGCAGCTAGCTAAGCTTGTACTGGATTATGATTCTGCAAGAGCGAGATATCTGCAGGCCACTAAAGCAATTCTCACGGCCACAAACAACCAGGCAATGGCTGCCAAAGCTGACTCATGTAAAGAGGAGATGGATGAAGCCCACAACAAAGTGGAGATATGTAAGGATCAGCTGGCTGCTGACATGTACAACTTCTCCTCCAAGGAGGGAGAATATGCATGTTATTATGTCATGTTGTTAGAGGCCCAAGCTGAATACCACAGAAGATCTCTTGCTTCCATTGAAAGCGTCCTGCCCACTATCAGATCACAGCAAGAGACGTGGTTGGAGAAGCCGGCGTTTGGCACAGCACTTGAGGAGCACCTTAAGCGCAGTAACAGGGAGATTGCTCTGCCTATAGAGGCCTGTGTGATGATGCTGTTGGAAACAGGCATGAAAGAGGAGGGATTGTTTCGTATTGCTGCAGGAGCCTCTAAACTAAAGAAGCTCAAAGCAGCACTGGATTGTTCAACTTCTCAGCTGGAGGAGTTTTACTCTGACCCCCATGCTGTAGCTGGAGCCCTGAAGTCATACCTGAGGGAGCTGCCTGAACCGCTGATGACCTTCCAGCTGTATGATGAGTGGATTCAAGCCTCAAATGTTTCTGATCCAGATAAGAGACTgcaggcattgtgggtaacctGTGACAGTTTGCCAAAGGCCAACAAGGCTAACCTGAAATATTTGGTGAAGTTCCTTGCCAAGCTAGCTCAGGAGAGTGAGGTCAATAAGATGACCCCAAGCAACATTGCCATTGTTCTGGGACCAAACCTGCTGTGGGCCAAAACTGAGGGGACTCTTGCTGAAATGGCAGCTGCTACTTCAGTCCATGTGGTGGCTATAATTGAGCCCATCATCCAGCATGCAAACTGGTTTTTCCCCGAAGATGTGGACTTCAATGTGTCAGGCATGTTTGTGATGCCCACTGGCCCTGTGCACCAGCCTGGGTACTCAGTTACCCCCGAGCCTGAATATGCCACTATAGAACGGAGACGCCCGGGCAGCCAGGGGGCATTGGAGACCGAGACTCCCCGCAAAGACAGTAGTGTTGTGCGAGAGCcaacctccacacctccacccCTGAGAAATGGCCCTGGAGGCCCCAGTGGAACGCCTGGGCAGCTGACGGTGGGGACGCCAACATCTGCTTCCAAGGGCCCCAGTCCACATGTGGTGCGCAGAGGTACAAAGAAACAGGCCCCTGCACCACCTAAAGTGGCTCCCAACCCCTCTTCCACTGCAACTACACCCCTGAAAGCCACACCCCCCTCCTCTGCACAGGCCCAGAACCAAACCCCAGCAGTGAGTCCCGCCCAGCCTGTAACCCTACCTCGCCGCCACTCTGGTAACCAGATGCCCATCCACGCCCCAAGTCACCCTCCTCCTCAGCCTCCACAGAATGCAACAGACCCGGAGCCGTCCCCTCCCAACAGCCCCACTCCTCCTGACACGCCCCCACACGACTCCACCCAACCTGCTTCTTTGTCCCGCCCTCGGCCAGTTCCTAGACCACGGCCCAGACCCAGTGTACCACCGCCGCCCCAGCCTCCCAGCGAGAGCACTAATGGAGTGTGCAACTCTGCGTCCAAGATCATTACAGATGTGGGCGTGACATTGAAGGGGCCCGGGCGGCTCTTTGTCCCGCATATTGTTGAGGAAGAGCCTGCGACTACGCCCCCTGATGCTGAGACCCAATCAGAGAGCACCATGCTTTGAGGAGGAGATGAAACCCCTCCTCCTTCATGCAGCCAATCACTCCCTTTAATGCTGTTTTGAGGCAGAATGATGCTCTGTAGACAATCCTGGCACTCCGGGGTCTTCTAGGCACCGAGGGAACTTTTTAGACGCTGTTACTGTTTCAACATTGCTGACATATTGAGGCTTGAGGTAAGCGATAAACATGCTGTATACTGTACCAATATCACATAAACTGTAACCTCTCTCGCGTGCCAGAATGGTTCTCGCTGCTTAGGCTTTAACTtcacaaatatgtttttttttgtgcttttgtgttgtTTCGTATTGTAAACTACATACCTACGTATTATTACTTTGTGAGTGTTTTACTGCACATAATTGTAAGGGAACAGCAAGGACAAAGCAAACCAAGCTTTATGTAAATGAagttctcattcacacacagtcacacaccgAACACTGTGTGTGCTGCCTTATATGTATCATTCTCTCTTATTCCTGTCAGCcatctttattttaaactctCAGTTACTGAGAGTGCAGGATTTCATTTTGAATACCTGAGAGATAATGGAGTGATTTCTAAGAGACCAAAAACCTGCTATAGGAAATGGATAATAGTGAAAAACTTGATTTTAAATGACATACATATGGAAATGCAGTGTATGGCTAAATATCAAGTATTGATTTTTGAGTACTTTTATTTCTGTGGTGCAATATTGATTGCAGTTTagaccttctttctttttttcttacaaatgaGACAATCACTATAtcaatattttaaagtaaatgagTGAAATTGTGATGTTGCGCAGGGATTGATCAAATGGACCAAATAATACAGCAATAAAACAATCTCATATATCTGTTAAACATCATATAAATATCTATATGGTGTTTTAACAATCATTTGGCCCACCTGAATGCAATGTTTTTGCATTAATAAATTACTTGAAATTTAAGTACAACTGCCACAAGGCTATATTTCTCTTGAGTATGCTGTTCAGGTAGAATTAGTTGAATGTTTTAGGGGAAATGCTACACAACATTGATGTCTTCTGAAAAGGACCCAATATTAAATttcttaaattaagaaatttatcTCATATGATTTGAtccagatttaattttttttaatgtctttttgcATTCTTTGCTTTGTAATTTTGgtgttattttttctataacaatgACAGTCCAACAAAAATGTGGgtgaatatttgaatagttcAGTTATGCTCAGGAAATAGCAACTCAGAAAAGCAAGTCATTCATCCATTTAATTACTGACGTatcttttgggttttttttgcaacaGGCTACTTCTAAATGACATAAAGGCTTGTAAATgttgatttgtatttttgttcaacttttttcttttatactgTGTGCACCTTTTCTGCAGCTGAGCTGGTTCTGCACATTTCTCAAAGCAAAGATACTCCAGTGTGTTGTACTGATTACTGCTGTATTTCCTACACAGCAAGTTGAATGACATACAATTACCTAATAAAATGCCAGgcaataagaaaaataaaattcagttcAAAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248587 lncRNA upstream 18840 12136773 ~ 12139867 (+) False LOC113528416
TU248585 lncRNA upstream 25236 12133260 ~ 12133471 (+) True G209863
TU248505 lncRNA upstream 72698 12085128 ~ 12086009 (+) False tbc1d16
TU248507 lncRNA upstream 96925 12061569 ~ 12061782 (+) True G209798
TU248481 lncRNA upstream 137575 12019863 ~ 12021132 (+) True G209775
TU248618 lncRNA downstream 11168 12201238 ~ 12202277 (+) True G209884
TU248620 lncRNA downstream 18166 12208236 ~ 12208486 (+) True G209886
TU248621 lncRNA downstream 18816 12208886 ~ 12209124 (+) True G209887
TU248628 lncRNA downstream 29231 12219301 ~ 12219553 (+) True G209894
TU248631 lncRNA downstream 42251 12232321 ~ 12232651 (+) True G209897
XM_026916951.2 mRNA upstream 18336 12135269 ~ 12140371 (+) True LOC113528416
XM_026916600.2 mRNA upstream 26410 12129591 ~ 12132297 (+) True cbx8a
XM_026916598.2 mRNA upstream 36571 12116439 ~ 12122136 (+) True cbx4
XM_026916961.2 mRNA upstream 72649 12049407 ~ 12086058 (+) True tbc1d16
XM_026917101.2 mRNA upstream 113203 12033886 ~ 12045504 (+) True gaa
XM_026916826.2 mRNA downstream 74635 12264705 ~ 12272091 (+) True narfl
XM_026916827.2 mRNA downstream 74635 12264705 ~ 12272091 (+) False narfl
XM_026916836.2 mRNA downstream 97150 12287220 ~ 12288452 (+) True fahd1
XM_026916814.2 mRNA downstream 150880 12340950 ~ 12356527 (+) True LOC113528323
XM_026916838.2 mRNA downstream 177496 12367566 ~ 12370262 (+) False ndufb10
XR_004579334.1 other upstream 580884 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 621542 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1740826 10349402 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 1285758 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3623172 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3728147 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3950260 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4897221 17087291 ~ 17109275 (+) False srl

Expression Profile