RNA id: XM_026916824.2


Basic Information

Item Value
RNA id XM_026916824.2
length 3222
RNA type mRNA
GC content 0.40
exon number 13
gene id zgc:113333
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12250684 ~ 12261251 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGCGACAACAGCAgacaatgcttttatttaaaagaactgGTAatagcaaacaaatccaaaccaTGAGGCACAGATCAAAAATACAAACCAGGCAATGAGTCAGACAATGAGCAAACAGAGCATCCAAGAGCAAGGCATGAATCAAAAACCTATGAAGCAAGCAAGGGTCAAAAGCAGTAATGACAAACATGAACTAAAGGCTTGGTACATCAGGGGAAAACTCAGAACCGAACGAATAGTGAGGGTGCATATATTGCatgtgtgcaatcagtaatcgGGTCTCTGTGAACATGACATTGAAGGTGGTGTGTGGGTGCTGTAGTCCAGAGTGTCCGTATTTGTATGCggaggtgcattgtgggaaatggagttcaGTTACAACAGTCCATTAAAAAGTTATTAGCACCAAAAAGacaaatgttagacatgtttAGAAGTAAGCTTATATAACTTATGCAGAAATTTGGGTGAGCCGTACCTTCTGATATATTTATAACCACAAAGATTCAACTGTAGccaaacatttaataacatatttgtaaaaatgtgaTGCATCAATTAATGGATGGAATGGTGAGAGGTTTGGCTGCATAATGACAGACTGGCATTCAGACAtgcaaaggtgtgtgtgtgtgtgtgtgtgtgaggccaaACAGGTTCATAATTTGACCTTGTTAGGGTTGCCTTGTTTGGTTTCTAGGTTAGGCAAACACTCATTGTGATATTTTTCAAGCCTTCTCTAACATTTCACATTTGTTCATGGAGGAATAATGGACTTGTAGTTTCTCAGATTATTGTTTCTCAGACCTGTCGCAGTGCTTTGATACTTTTTAAACCTTAATGAcacctgccttttttttttaatttagtagcAGTTTAgcttcataatttttttttggtattcaATTTGTATTTCCCGTAtgcaataattttttaattatgatgTGTAGTAGTTGTAAATTGTACATAATGTCTTAATAATCTACCAGTTATGTATAAAACAAAGTGCTACTGTTCTACAGTCATTGTATGTTGAGTGGAGGGGGCAGTTTGACTCACTCCTGCCAGTGTGGGATTATCTTTGCATGTGTTCGGGGTAGGTTTTATTTCTGCAGTAGCAACGCTATGGACTGCAAGAGGATCTTAAGGCTGCTGGTTGCCTTCCTGGTTGTGCTCGCTGGAGCAAAGCTGTTTTTCCACAGTCGAAGAACAGAAATTGGAGAATACACAAACATCAAGAAGTATGTCACAATGCCAGGTCACTTCTGGCTGCCAGAGCGTACAGCTGGACGCAGCAACTTGCTTGTGCCACCAACCCGTAAAAAGAATAAGGAGAAGTCAGGGGACCAGAAGACTGCCATTCATCCAAAGCTGGAAGTAAAAAGCTCAGTAAAATTCCCAGTGAAAATGTACACAGGCCCTCTCCGTGTAGTACACTTAGATCTTAAGGGTGCTGCACCCAAAGTCAGTTATTTTCAGCAGATCTTTCCACTAATCTCCAGTCTTGGTGCTGATGGGATTTTGGTGGAGTATGAGGATATGTTTCCCTATGAAGGGGACCTTGAAGTTCTCAGGTCACCTTTTGCATACAGCGTGGATGAAATAGAAGAAATTAAGAACCTGGCCAGCCTCTACAATCTTGAGCTGATACCCCTAGTGCAGGTGTTTGGACATCTAGAGTTTGTGCTAAAACATGGACAATTTTTTAACTTGAGAGAAGTGGCCGACTTTCCAAACAGCCTGAACCCTCTGGTTCCTGGTAGCTTAAAACTGGTTAAAGAAATGCTAACTCAGGTCCTGAAGAAGCACCCGCAGGCACGATGGTTTCATATTGGAGCTGATGAGGTTTATGGACTTGGTGAGAGTGCGGACTCGAAAAAGTGGATGAAGCAAAATAATGGAAGCATAGCAGCACTCTTCCTCAGCCATGTGACAAAGGTCTGCCACATCCTGGCTGAACTGAAGCCTGGAATAAAGCCTATATTTTGGGAAGACATGCTCAGGAAGATCAGTGCCACCTTACTCAAAGAATCCGGCTTGTCAAGTCTCGCATCCCCTATGATATGGAAATATAATGCAAACATGAATTTGGTCCAGATAGgAGAACTGCTATCTAACTACCAACAGGCCGGATTTCAGAATGTGTGGTTTGCAAGTGCATTTAAAGGAGCTTCAGGCATTGACCAGAGATGGACACCACTCAATCACCACTTAGAGAATCACCTAGCCTGGCTTAAAGTCATGGCCTCCATGTCTAAATACCCCTCTATAAAATTAGATGGCATAGTTTTAACAGGCTGGCAAAGATATGAGCATCACACAGTGCTATGTGAACTGCTTCCTGTGGCCATCCCATCTCTGGCCATTTGTCTAGAGACTCTAAAATATGGTTCATTTAATCGTACAGCTGAAACTGAGGTACAAAGACATTTGGGCTGTAAAGTTGACCTAAAAGCTAATAGCTgTCAAGGTAATGGGTCATTTGCAGGCTCTCAAGTTTATTACATGGTTCAAAAAATCCACAATGAACTTCGGAAATCCACTGAAGAAATGACTCAAAACTATCACCTGAGAGGATCATTTGGTCCTTACCAGAGAAAATACAACTTTGCCAATCCGCGGAATATTGGATATTTTAAGGGTGTACTAATCAAGTTGATGAATGAGTGGGATCACTTTATGGAGATGTTCAGGATGGAGATGCTGGTCGTCTACTTCCCAGACACTGTGGAGGAGTGGATGGAGGAGAACGTTAACCAATACATGGATAAACTCCATAGTCTGGCCAAAGACGTAGAACACATTGTTAAACTTAAAGGACAACCAAAGAGCCTTAAAACTGTATGATattatgatgatatatgatgGATGTTAAAAATATCTGACCCCCTTAGGAGGCTGAAAAAAATAAGGGTATTTTCTCCATGTTGCTAAACTCCATGTTGCTGTTACCAGGAAAATGATATGGGATTTAtattgatatgatatgatatgatatgatatatgatatgatatgggTGAATATTTGGTTGTGTGTAATTGAGAGACATATGTGAGGACctttttttcattatgtttcatgtttcattgaTGTATTGCACTTAACATTGCACTTTCTGTTTTGCATTGTCTCTTTAAAAAAACTGGAAGAGAGTTTTAAAAGTATAATGGGGTTTCTATGTTTTCACTGACTTTGTACAATAAATATGATAGGGGCTCA

Function

GO: NA

KEGG:

id description
K14459 HEX; hexosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248726 lncRNA downstream 13492 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 76277 12173454 ~ 12174407 (-) True G209951
TU248700 lncRNA downstream 91572 12158070 ~ 12159112 (-) True G209946
TU248590 lncRNA downstream 114765 12135508 ~ 12135919 (-) True G209868
TU248554 lncRNA downstream 165982 12083736 ~ 12084702 (-) True G209835
TU248756 lncRNA upstream 38629 12298124 ~ 12298977 (-) False LOC113528332
TU248758 lncRNA upstream 73959 12333454 ~ 12333662 (-) True G209984
XR_004579344.1 lncRNA upstream 186966 12446461 ~ 12463878 (-) True LOC117598772
TU248929 lncRNA upstream 326936 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 608095 12867590 ~ 12868480 (-) True G210351
XM_026916822.2 mRNA downstream 2594 12239136 ~ 12248090 (-) True e4f1
XM_026916812.2 mRNA downstream 14657 12201968 ~ 12236027 (-) True grid2ipa
XM_026916823.2 mRNA downstream 50210 12190072 ~ 12200474 (-) True slc5a11
XM_034310196.1 mRNA downstream 52827 12190072 ~ 12197857 (-) False slc5a11
XM_026916587.2 mRNA downstream 96801 12147496 ~ 12153883 (-) True LOC113528185
XM_026916830.2 mRNA upstream 12675 12272170 ~ 12278591 (-) True hagh
XM_026916831.2 mRNA upstream 12675 12272170 ~ 12278590 (-) False hagh
XM_026916834.2 mRNA upstream 20538 12280033 ~ 12287138 (-) False LOC113528334
XM_026916833.2 mRNA upstream 20538 12280033 ~ 12287138 (-) True LOC113528334
XM_026916829.2 mRNA upstream 38281 12297776 ~ 12315498 (-) True LOC113528332
XR_003402971.1 other downstream 225112 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 494761 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 549583 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 684556 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 714006 11536560 ~ 11536678 (-) True LOC113528647
TU248755 other upstream 40510 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 74363 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 289334 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 289334 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 289335 12548830 ~ 12559213 (-) False tom1

Expression Profile