RNA id: XM_026916826.2


Basic Information

Item Value
RNA id XM_026916826.2
length 2019
RNA type mRNA
GC content 0.47
exon number 11
gene id narfl
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12264705 ~ 12272091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAGCTTCCAGAGCTGCCAGGTAGCTAATGTCGCGTTTGGTCGCAGTGTATTATTGTATGGAGGTCATTCAATATGGCGTCTCACTTTAGCGGAGTTTTACAACTGACTGATTTGGATGATTTTATCACACCGTCACAGGAATGTGTGAAGCCAGTGAAAGTGGACAAGAAGCAGGGGCGATCTGTGGCCAAAATCCAGATTGAAGATGATGGCTCTTACTTTCAGGTTAATGAGGATGGCCGAATGCAGAAGCTGGAGAAAGCCAAGATCACTCTGAATGACTGTTTGGCCTGTAGTGGCTGCATCACGTCAGCCGAGAGCATCTTAATCACCCAGCAGAGTCATGAGGAACTATACCGAGTGCTCCGCCTCAATAAGCAGAGTAGCAGCAGTGAGCAGAAGCTGGTTGTAGTGTCAGTGTCACCACAGTCTCGGGCTTCCCTAGCCACACGCTACTCTCTCAGCAGCAGCGAGGTGGCCAGGAGGCTTACAACCTTCTTCAAAAATCTGGGTGTTCATTATGTATTTGACACTGGATTCAGTCGCACCTTCAGCCTGCTGGAGAGTCAGAGAGAGTTCCTCAAGAGGTTTGCTCGGAAAGGGGAGGACAAGAAAGCCTTGCCCATGCTGGCATCTGCCTGCCCAGGTTGGATCTGCTATGCTGAGAAGACCCATGGTGACTTCATCCTGCCTTACATCAGTACAACCCGTTCTCCTCAACAGATGATGGGCTCACTGGTCAAGAGATTCTTCGCTAGTCAGCAGGGTGTTGAACCGCAAAAGATTTACCATGTGACCGTGATGCCTTGCTATGACAAGAAACTGGAAGCTTCCAGACCTGATTTCTACCTTAGCGAGGCAGAGACCAGAGAAGTGGACTGTGTCATTACATCAGGAGAAGTTCTCAagatgttggaagaggaaggcgTGTCTCTGTGTGATATAGAGCCAGCACCTTTAGATACTATGTTCAGTAATGTGTGTGGTGAGGAGCTGCTGTGTCATGCTGGGAGTGGTTCAGGAGGATATCTTCATCACGTCTACACTCGCGCTGCCAAACAACTCTTTGGAGTTGAAGTGGAGGAACTCACATACAAGACTCTCAAAAACAAGGACTTCCAGGAAGTCATTctagagaaagatggagaagtTCTTCTGCGCTTTGCTGCCACCTACGGCTTCAGGAATATTCAGAACCTCGTGCAGAAGTTGAAGAGAGGAAAGTCACCGTACCATTTTGTAGAAGTCATGGCATGTCCATCAGGGTGCCTGAATGGCGGAGGTCAGCTGAAGCCTGTAGCAGATCAGTCCAACAAGGAGCTGCTGCAGCAGGTGGAGGTGGCATACAGAGCGGAGCAGCCGTCTGCACCCGAGGAGGATCAGCGTGTTGCTGAGCTTTACCACACATGGCTAAAGAGTATGGGAGAGGAGAAAGCACGAGAGCTACTTCACACGCAGTATCACGCAGTGGAGAAAAGCACCAATGGACTCACCATCAAGTGGTGAAAATCTGAAAGCCTGGTGTGTGAATCGTCTGAAATCTATAAAGCAGCAAAGTGATGCATGGAATATGATCTCCAGCACGGCAATTCAGGACAAGTGTTAGAGTAATGAGCTCATGATCACAATCTTGAGAAAATTCTTGTATAATAAAGTACAATCAGCGTTCATGTGTAGTTGTTTCAGCACATGATTATATGCATAAAGGCATAACCACTTTTCCCAAGCTTACcagctgatttattttctgCGGCTTTGTACTGGGCATCACGTACGAGTGCTCCAGTATTTCATGACAACTTTCATGACAATTCCATAAGTACAGAAGCAAGACTGATGCTCCTCAAAGTCATCTGTTTTGAAATGAGTAAGTTCACAGACTCAGTTGTGTAGCGTTTGTCTGTGAAGCCTCCACATACTGTTTTTTTGCTCTGTAGTTGCATCATGTTGTGTGTGGGAGCAAGCCGAACATCATCTCCCCATGAAGTATGCTGAGTCCTTAGTTTgtctaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248631 lncRNA upstream 32054 12232321 ~ 12232651 (+) True G209897
TU248628 lncRNA upstream 45152 12219301 ~ 12219553 (+) True G209894
TU248621 lncRNA upstream 55581 12208886 ~ 12209124 (+) True G209887
TU248620 lncRNA upstream 56219 12208236 ~ 12208486 (+) True G209886
TU248618 lncRNA upstream 62428 12201238 ~ 12202277 (+) True G209884
TU248637 lncRNA downstream 95487 12367578 ~ 12374372 (+) True ndufb10
TU248692 lncRNA downstream 103816 12375907 ~ 12377507 (+) False G209943
TU248694 lncRNA downstream 103816 12375907 ~ 12378084 (+) True G209943
TU248695 lncRNA downstream 106068 12378159 ~ 12378413 (+) True G209944
TU248698 lncRNA downstream 106855 12378946 ~ 12380986 (+) True G209945
XM_026916816.2 mRNA upstream 74635 12158703 ~ 12190070 (+) False arhgap17b
XM_026916815.2 mRNA upstream 74635 12158705 ~ 12190070 (+) True arhgap17b
XM_026916819.2 mRNA upstream 74635 12158707 ~ 12190070 (+) False arhgap17b
XM_026916817.2 mRNA upstream 76116 12158706 ~ 12188589 (+) False arhgap17b
XM_026916818.2 mRNA upstream 76191 12158706 ~ 12188514 (+) False arhgap17b
XM_026916836.2 mRNA downstream 15129 12287220 ~ 12288452 (+) True fahd1
XM_026916814.2 mRNA downstream 68859 12340950 ~ 12356527 (+) True LOC113528323
XM_026916838.2 mRNA downstream 95475 12367566 ~ 12370262 (+) False ndufb10
XM_026916987.2 mRNA downstream 113884 12385975 ~ 12389435 (+) True kdelr2a
XM_026916328.2 mRNA downstream 124413 12396504 ~ 12435649 (+) True spag9a
XR_003402925.2 other upstream 76116 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 686882 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 727540 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1846824 10349402 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 1203737 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3541151 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3646126 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3868239 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4815200 17087291 ~ 17109275 (+) False srl

Expression Profile