RNA id: XM_026916830.2


Basic Information

Item Value
RNA id XM_026916830.2
length 2087
RNA type mRNA
GC content 0.39
exon number 8
gene id hagh
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12272170 ~ 12278591 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGGCAGCCGTTTAGGTCTCGGCCAATATCAGTCAAACCGCAAGTGAATGTTATTTGAGTGAATGTGAACTGATAGTGACTAGTTTAATgctacattaaaacacaaaaaggagattaatgttaaaaattacaaaaccaCTTGGATATAGTGCGAGGTTTCTCAGTGCCTTGAGCCATGAGAGTGAAGGTTATTTCCATTTTGGAGGACAACTACATGTACTTGGTTATAGATGAGCAAAGTAAAGAAGGCATTGCTGTAGATCCTGCTGTACCTCACCGGCTGCTTGAGATAGTGAAAAGAGAAGGAGTGAGACTCACAGCAGTGTTAACTACACACCATCACTGGGACCATGCACGGGGCAATGAGGCTCTGCTAAAGGACCTCCCCGATTTACAAGTGTATGGAGGAGACGACCGCATCACAGGACTGACCCACAAAGTTACTAATGGCCAGGAGCTCAAGTTTAACAAGATAAATGTGAGATGCCTGTTCACACCTTGCCATACCTCTGGACACATGTGCTACTTCCTGTGGGAAGACAACTGCCCCGATTCCCCCGCAGTGTTCACTGGGGACACACTGTTTGTGGGTGGTTGTGGGAAATTCTTTGAGGGAACGGCAGAGCAGATGTACCACAACCTGACCAAGGTGCTAGGAACCCTGCCTCAGGACACAAAGATCTTCTGTGGTCACGAATACACAATAAAGAACCTGAAGTTTGCAATGCTGGTGGAACCAGAAAACGAGAGGGTGAAGGAGAAGCTTAGCTGGGCTCGGTTAATTACTAGGCAAGAGACGACGACGACAAGCCGACAGTGCCGTCAACGTTATTGGAGGAATTTGAATACAATCCATTCCTCCGTCTCTCTGAGGAGGGTGTGCAGAAGTTTACAGGGAAGTCAGACCCTATCGAGGTTCTACGTGTGCTACGAAAAGAGAAGGACAACTTCAAGAAGCCCAAAGAGCGCATTCCCCCGCATGCCATGCTCGCTCTGGAATGGGGTCTGCTTAGACCAAAACTCACTTAAACAAAGCACTGGACTACTGCAGTACACACTGACCATGCTGAAGCTAGTGCTACTGTCTATTGCTGACGTAGTGCCATTATGAGAGAACATGATAAGTTTAACTTACCACTTACATTGCATGTTAATCATAAATTACAATTTGCATTTCTGCATCTTGTCACATTGAGGAGGCATTTATTTCAATGATCCTGATTTATGCTTGTTTACACATATTTGCACGAATTACCTGATGATACTGtaagtaatataaaaataattatataaataatttacaagAAAATCATTTGAGTTGCATTTAAATTGttcacttttttgtttacaCAATTTTACCTCTTAACTACAAAAAAGATGCTTAACCTCCATGGATTAAATACTCAGTCAATAAAGCTacaattaaatgtaaacaagtttttattaaacatattcagtaatgtttatttcctaaataaatatagtaaGAATAACTTATATACATATGATCATTTattcaaacacattttcttaACAGATTGTAAATTATTCAAGGTACCTGCAAATGCAAAGCAGAGTAATTTGATTGTTCTATCAACGATTATTTTTCCTatgtatatgaaatatttaaaataataaaaagtaggTCTTTCAAGTTCAGAGAAATGGCAAATggcctttcatttttttgttgagTATGATGCTGATCACTCTCCTCGTGTAATGTATAAGTCAGCTAAGCAATGGAACTGGAAATACTTCACCCAGAGGAATAGAGAACTTTTCTGATTGCTGCCATTAATGTTCAGGGTGGGACAAGTTTTGGGGAAATTACTTCAgacttgaaaaaataaaaagcatcagTTTCACAATTCTTGTTAATCTAAAAATGCAACGATAGCTGTTTTCATTGATGCTCTGTGCCACTGGTTTGCCATGACAGCTGGATCTATCTGTCTTATGGTCAATTAAAGAGAACAGAATTTCTttttacagtgaatatattGCATTACATTGACACAGGGGCCTTACCCCCAGAATAACAGATTCAGTAAATTAAAGCACAATTTATCAGTCAATAAAGTAT

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004416 hydroxyacylglutathione hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248726 lncRNA downstream 34978 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 97763 12173454 ~ 12174407 (-) True G209951
TU248700 lncRNA downstream 113058 12158070 ~ 12159112 (-) True G209946
TU248590 lncRNA downstream 136251 12135508 ~ 12135919 (-) True G209868
TU248554 lncRNA downstream 187468 12083736 ~ 12084702 (-) True G209835
TU248756 lncRNA upstream 19533 12298124 ~ 12298977 (-) False LOC113528332
TU248758 lncRNA upstream 54863 12333454 ~ 12333662 (-) True G209984
XR_004579344.1 lncRNA upstream 167870 12446461 ~ 12463878 (-) True LOC117598772
TU248929 lncRNA upstream 307840 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 588999 12867590 ~ 12868480 (-) True G210351
XM_026916825.2 mRNA downstream 10919 12250684 ~ 12261251 (-) False zgc:113333
XM_026916824.2 mRNA downstream 12675 12250684 ~ 12259495 (-) True zgc:113333
XM_026916822.2 mRNA downstream 24080 12239136 ~ 12248090 (-) True e4f1
XM_026916812.2 mRNA downstream 36143 12201968 ~ 12236027 (-) True grid2ipa
XM_026916823.2 mRNA downstream 71696 12190072 ~ 12200474 (-) True slc5a11
XM_026916834.2 mRNA upstream 1442 12280033 ~ 12287138 (-) False LOC113528334
XM_026916833.2 mRNA upstream 1442 12280033 ~ 12287138 (-) True LOC113528334
XM_026916829.2 mRNA upstream 19185 12297776 ~ 12315498 (-) True LOC113528332
XM_026916839.2 mRNA upstream 55263 12333854 ~ 12339263 (-) False msrb1a
XM_026916828.2 mRNA upstream 78033 12356624 ~ 12363766 (-) True LOC113528330
XR_003402971.1 other downstream 246598 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 516247 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 571069 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 706042 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 735492 11536560 ~ 11536678 (-) True LOC113528647
TU248755 other upstream 21414 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 55267 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 270238 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 270238 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 270239 12548830 ~ 12559213 (-) False tom1

Expression Profile