RNA id: XM_026916833.2


Basic Information

Item Value
RNA id XM_026916833.2
length 1927
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC113528334
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12280033 ~ 12287138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGTGGGCGGGATTGTACTTCAAATCCAACTTTCTACTTCTTCCGTGTGGTGTCGTAATCGCGATATTACCATGTTATTTAAGTCTCTGCTCTTCGGGGCTTGCGGTCTTGGCGCACTTGGAGCTGCAGCGTATAAATTTGccCCTACTCAGATCCCGGCAGCATTTTTTCATTCCGTGGTTAGGAAATCAGCTCTCGTGGAGCAGTCCAACATGAAGATAGAGCTGTTGCCTGCACTCACTGATAACTACATGTACCTCCTCATTGACGAGGACACAAAAGAGGCAGCCATTGTGGACCCAGTAGAACCTGTGAAGGTTGTTGAAGCTGTTAAGAAGCACGGCGTGAGGCTCAAAACCGTTCTAACCACACATCATCACTGGGACCATGCTGGTGGAAATGAGAAGATGGTGAAATTGGTCCCTGGGCTGACTGTGTATGGAGGTGATGACAGAATAGGAGCCTTGACCAAAAAAGTAACACATTACAACACTTTCAAGGTGGGCTCGCTCAATGTAAAGTGTTTGTTTACACCGTGCCATACGAGTGGACACATCTGCTATTTTGTGACATCAGAAAATAGTTCTGAACCCCCGGCGGTGTTTACAGGGGACACCCTGTTTGTGGCAGGCTGTGGAAAATTCTTTGAGGGTACAGCTGAGGAAATGTACAAAGCTCTGGTAGACATTCTGGGACGACTTCCTCCTGAGACGCGTGTGTACTGTGGTCATGAGTACACGATCAACAATTTAAAATTTGCACGCCATGTTGAACCAAATAACGAGGCCATCAGGAGAAAACTGGCATGGGCTAAGGAGAAATACGATAACGGAGAGCCAACCATTCCTTCCACGATGGCGGACGAGTTCACGTTCAACCCTTTCATGAGAGTcagGGAGAAGTCAGTACAGATGCATGCCGGGACAAGTGACCCCATAGACACGATGAGGAGCATCCGTAAAGAGAAGGACGGCTTCAAAGTGCCCAAGGACTGAGCTTGTGTGCAGCTTTCAATGCATTGAGGAAATTCTCCATCACAATGCGTCTTCATTGCACTTCATACTCTTACTAACATAAACTGGGCTATACACAGGAAGGAGAACATTCATGTTAATCCAACATTTATAAGCTCCTTTAGGGGTAGGGattgatttaaatgttttgtgtttctctggTCAGCTTGTTGTTCAAAATGACCATCACATGCCAGCCATGGCCTCAGAGCTGCACTGAAGTATTTAGCTGACTTAGCTCATCTGCTGCttatcatatataatataacttaTAAGAGTCttttatgatttaattaattgtgTTAGAGCTGGGAAAACATGAAGCTTCACAGTGCTGTGGCACCTTAAGAGTTTGATTTGGATTAATGTTTATACAGTAGAAAGTGTGAAATCAAATCCAGCAAGCAGCATATCTAGTTTCTAAGTTAAAGGTACTCATTAGTGGCACCTATAGAATCTGCATAAGGAATACTAACAGCTTCTCAGAGTTACAAAAAAAGTTGTTTCAAACCTTTttctgtgatgtgtttagtttggtaaatgaaaaaaaaaagccagatgtttctgatttaaaaatatttacatatgttGTGATTTTGAAAGCAGGGGTTCTTAATTAGTAAACAGATGTCTTAATgtgcaatgttttatttttgttgactGAAGAAGACTATATTAAGATGGTAGGTGGTTATGATCTTTGTGTTACAAGAGAAAATGCATTTACAGGATTCCAGACAGTATGCATGGTCAGATATGAGACATTCATATCTTTAAAATTCTTTCATATAGAGGCAAAAGTTGCCATGCCCTGATTATTATTGTACCCTGCTGTGCACTTTCTGTTTTCAGAAGCgaaaaagcaaaaatgattatatatcaGTGTGATCAATAAAGTGCCTGGGAGAACCAA

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004416 hydroxyacylglutathione hydrolase activity molecular_function

KEGG:

id description
K01069 gloB, gloC, HAGH; hydroxyacylglutathione hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248726 lncRNA downstream 42841 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 105626 12173454 ~ 12174407 (-) True G209951
TU248700 lncRNA downstream 120921 12158070 ~ 12159112 (-) True G209946
TU248590 lncRNA downstream 144114 12135508 ~ 12135919 (-) True G209868
TU248554 lncRNA downstream 195331 12083736 ~ 12084702 (-) True G209835
TU248756 lncRNA upstream 10986 12298124 ~ 12298977 (-) False LOC113528332
TU248758 lncRNA upstream 46316 12333454 ~ 12333662 (-) True G209984
XR_004579344.1 lncRNA upstream 159323 12446461 ~ 12463878 (-) True LOC117598772
TU248929 lncRNA upstream 299293 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 580452 12867590 ~ 12868480 (-) True G210351
XM_026916830.2 mRNA downstream 1442 12272170 ~ 12278591 (-) True hagh
XM_026916831.2 mRNA downstream 1443 12272170 ~ 12278590 (-) False hagh
XM_026916825.2 mRNA downstream 18782 12250684 ~ 12261251 (-) False zgc:113333
XM_026916824.2 mRNA downstream 20538 12250684 ~ 12259495 (-) True zgc:113333
XM_026916822.2 mRNA downstream 31943 12239136 ~ 12248090 (-) True e4f1
XM_026916829.2 mRNA upstream 10638 12297776 ~ 12315498 (-) True LOC113528332
XM_026916839.2 mRNA upstream 46716 12333854 ~ 12339263 (-) False msrb1a
XM_026916828.2 mRNA upstream 69486 12356624 ~ 12363766 (-) True LOC113528330
XM_026916835.2 mRNA upstream 84395 12371533 ~ 12374265 (-) True rps2
XM_026916147.2 mRNA upstream 88755 12375893 ~ 12381034 (-) True si:ch211-139g16.8
XR_003402971.1 other downstream 254461 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 524110 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 578932 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 713905 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 743355 11536560 ~ 11536678 (-) True LOC113528647
TU248755 other upstream 12867 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 46720 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 261691 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 261691 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 261692 12548830 ~ 12559213 (-) False tom1

Expression Profile