RNA id: XM_026916835.2


Basic Information

Item Value
RNA id XM_026916835.2
length 897
RNA type mRNA
GC content 0.56
exon number 8
gene id rps2
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12371533 ~ 12374265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCTGAATACACATCACCAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTCCGTGGAGGTTTCGGCACTGGCGGCCGGGGCCGCGGTCGTGGTCGCGGCAGAGGCCGGGGGAGAGGGCGCGGAGCCCGGGGCGGCAAGGCCGAGGACAAGGAGTGGGTGCCTGTGACCAAGCTTGGACGTCTGGTGAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTACCTGTATTCTCTGCCCATCAAGGAGTCTGAGATCATTGACTTTTTCCTCGGCTCAGCCCTGAAGGATGAGGTGCTGAAGATCATGCCTGTCCAGAAGCAGACTAGGGCCGGTCAGCGCACCAGGTTTAAGGCTTTCGTCGCCATCGGTGATTACAACGGACATGTTGGTTTGGGAGTGAAGTGCTCGAAAGAGGtggccacagccatccgtggagCCATCATCCTGGCCAAGCTGTCCATCATCCCTGTCAGGAGAGGCTACTGGGGTAACAAGATTGGAAAGCCCCACACTGTCCCCTGCAAGGTGACTGGTCGCTGTGGCTCTGTCCTGGTGCGTCTGATCCCTGCTCCCCGTGGTACTGGCATCGTGTCTGCTCCTGTTCCCAAGAAGCTGCTCATGATGGCTGGTATTGACGACTGCTACACCTCTGCCAGAGGCTGCACGGCCACCCTGGGCAACTTTGCCAAGGCTACTTTTGATGCCATCTCCAAGACGTACAGCTATCTGACCCCTGATCTCTGGAAGGAGACTGTGTTCACCAAGTCTCCCTACCAGGAATTCACTGATCATCTGGCCAAAACCCACACCAGGGTCTCGGTACAGAGGACCCAGGCTGCTCTTCAAACCTCCTAAATTTTGTACAATGGATTGAAATAAAATCCTGAAAACAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02981 RP-S2e, RPS2; small subunit ribosomal protein S2e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248758 lncRNA downstream 37871 12333454 ~ 12333662 (-) True G209984
TU248756 lncRNA downstream 72556 12298124 ~ 12298977 (-) False LOC113528332
TU248726 lncRNA downstream 134341 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 197126 12173454 ~ 12174407 (-) True G209951
TU248700 lncRNA downstream 212421 12158070 ~ 12159112 (-) True G209946
XR_004579344.1 lncRNA upstream 72196 12446461 ~ 12463878 (-) True LOC117598772
TU248929 lncRNA upstream 212166 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 493325 12867590 ~ 12868480 (-) True G210351
TU249178 lncRNA upstream 494987 12869252 ~ 12870186 (-) True G210349
TU249180 lncRNA upstream 547672 12921937 ~ 12923464 (-) True G210350
XM_026916828.2 mRNA downstream 7767 12356624 ~ 12363766 (-) True LOC113528330
XM_026916839.2 mRNA downstream 32270 12333854 ~ 12339263 (-) False msrb1a
XM_026916829.2 mRNA downstream 56035 12297776 ~ 12315498 (-) True LOC113528332
XM_026916834.2 mRNA downstream 84395 12280033 ~ 12287138 (-) False LOC113528334
XM_026916833.2 mRNA downstream 84395 12280033 ~ 12287138 (-) True LOC113528334
XM_026916147.2 mRNA upstream 1628 12375893 ~ 12381034 (-) True si:ch211-139g16.8
XM_034310198.1 mRNA upstream 15441 12389706 ~ 12394578 (-) False LOC113528448
XM_034310199.1 mRNA upstream 15441 12389706 ~ 12394578 (-) False LOC113528448
XM_026916992.2 mRNA upstream 15441 12389706 ~ 12394578 (-) True LOC113528448
XM_026916993.2 mRNA upstream 15441 12389706 ~ 12394079 (-) False LOC113528448
TU248759 other downstream 32264 12333858 ~ 12339269 (-) True msrb1a
TU248755 other downstream 56064 12300005 ~ 12315469 (-) False LOC113528332
XR_003402971.1 other downstream 345961 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 615610 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 670432 11699906 ~ 11701101 (-) False zgc:162612
XR_004579428.1 other upstream 174564 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 174564 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 174565 12548830 ~ 12559213 (-) False tom1
XR_004579427.1 other upstream 174855 12549120 ~ 12559213 (-) False tom1
trnas-aga_12 other upstream 452193 12826458 ~ 12826539 (-) True trnas-aga_12

Expression Profile