RNA id: XM_026916842.2


Basic Information

Item Value
RNA id XM_026916842.2
length 2757
RNA type mRNA
GC content 0.46
exon number 18
gene id zgc:158403
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13464085 ~ 13493942 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAGGAGCCAAGAAGCGCTCGTGTTCCCGGAGCACCAGCACGCAGGAGAAAAGCGAGCCGCCTCTTTCACACGACTGAACGCTCCTGCTGAAGTCCTCAGGATTCCTAAACTCAATGTGACTAACTGCTTCTCCGCACCAATTGTCGGCTCTGTTCTCCCAAGTCACTGGCTATTTGGAAGCGAGCCGAGCCCGGAGCACTTTCTGACAGGTGTTTCGGTTCCACCCAGGACTTAGAGGAGACTCGATACTGAAATCATGTCCAACGGGAAAGATGCACCTGTTAGCGCGAACTCCACACAGACGTCCTTAAAGGCATGTCTTGAAGAGTGTATGGAGGCCTTGGATCTGTTCCTCAACAACCACTTCAGCGAGAGTCTGGACAAACTGCAGCCACGATGTAAAGAGAGTATGTATCATGCTCTGATCTACGCTACAGTGTTGGAGATGCAGGCTATGATGACCTTCCAACACGACGACATTGTCAACGCAGGAAACACAATGAAGAGTGCTCAAGAGGTTTGCCAGAGGTTTCGTAAGAGATCTGGCAGTCTGGCAGCCAGAGCAGCAGGAGATGAGTTGTCTGAAGAGGAGCTCCATGCTGAAGCGTGTTATGCCGAATGCTTGCTACAAAGAGCTGCTCTCACATTTTTACAGGATGAGAACATGGTGAGTTTCATTAAAGGTGGAATCAAAGTACGCAATAGCTACCTCATATACAAGGAGCTCCACTCTTTTATTGAGTCACATAGCTCCTTCAAAGGGCCAAATCACAAGCACCTGGAGGGAGGGGTGGCGTTTGGAATTGGTGCTTTCAACTTGACACTTTCCTTGTTCCCTGCACGGATTCTCAAAGTTTTGGAGTTTGCTGGATTTTCTGGGGATAAGgaatatgggCTTTCCCAGCTGTATGAAGGGGCCATCTCCCATAACCTGCGTTCTATGCTATGTGCCCTGCTGCTGCTCTGCTACTACACCTTCCTCTCATTTATTTTAGgGACAGGTGAGGGAGAAGTAGCTGATGCTGAGAATCTGCTGAAACCATTTCGGCTACGATACCCACGTGGGGcgatatttcttttctttgcaggCAGAGTGGAGGAAATAAAAGGCAACATTGATGAGGCAGTGCTGCTGTTTGAGGATGGCTGTAAAGCGCAGCAGGCCTGGAAGCAGTTTCACCACATGTGCTACTGGGAACTGATGTGGTGCTTCACCTACAAGAGGCACTGGAAGATGGCATACTTCTACGCCGACCTGCTCAGCCAGGAAAGCCGCTGGTCCAAGgctatGTACGTGTACATGAAGGCTGCTTGTCTCAGTATGCTGCCAGAAGGGGAGCCTCGGCCATTTGGGGAGAACGAGAGAGAGCTCTTCAGgcAGGTGCCAACCTTCAAACAGAAGATAGCAGGGAAGTCTCCTCCTACAGAGAAGTTTGCTATCCGCAAAGCCCGACGCTACAGAGCCAGCAACCCCATACCCCTCCCTGTTCCTGTGCTTGAGATGATGTATATGTGGAATGGCTTCTCCATGATAAGCAAGCAGCCGGAGCTCACAGCAGGCATACTGGAAACTGTGCTGGAGGCAGAGCAATCCCTGCAGGCTGCTCCCGAgaatgtgtacagtgtggatgACAGCtgcctgattttgctgttgaAGGGACTGTGTCTGAAGAACCAAAACCGACTGCATGCTGCTGAAGATTGTTTTAACAAAGTTTACAGCAGTGAGAAGAAGTTGAAGTATGACCACTACCTGATTCCTAACACTCTGTTGGAGCTGGGCCTGCTCTACGCTGATACAGGGAGGAGGGATCAAGCCATCAAACTCCTGCAGAAAGCCAAGAATAACTACAAAGAATACTCAATGGAGTCCCGCACTCAGTTCAGGATCCACGCAGCTCTGTCTAAACTGAAGGCCGACACGAGTGACCAGGACGAGATCACAGCGCTGTAACTATTACCAGCTGAAGTGGCATGTTGAGGACTAATTCATCTAGTGAACTACAATACCAAAGAGACCCTGTCATCCTCACTCCCTAATTCTGTCCAGTGGAAGGTTAAATATAAAGGACCCAACTCAGACAGTCTTGTGGACATCTTAGGGACATTTAAAACACTGTATTCGTAGCCAATTCACATGATATGTGTATTTTAGGATAAATAGCTTAGATATATAAGTAATAGACAGTTTATTGTGGGtgagatttccaaacatttccaCATGAAAAGAGtattaaatagtaataaatctACCTTGAGCTACAGCAGCACTTTTAGGAAGGAAATATTTCTCAGGcttttccaattatttttgatttattgaaGATGATTAGGTATGCCATCTATGGTATACTATGAAAGCATTGCGAGGTGACGTTTTCTCTAAGAAATCAGATGAAGCAGTTATTGTTCAGTTACAAAAAACACCATGTACAATCTTCCAAGTTAAAGAAATACTAATTCACGACTAAATATAGCATATGACTGTTCTCGACTAGGAGCTAATTCTTCCACTAAAAGGTGATCAATATATTCCAGGAAGGACTAGCTTTGGTCTGAAGGCCAAATTTACACTGCTAATTGTTTTAAATTGATTTCTGTGTGAAAGCCAAGATGCAGTGGCTACACATTTCTAAGATATCTTATCAGAGTTTATGCTGAAAGGATATTTTGTAAAACTAACAATGTTGCACCAAAGGTTTGTGGAGCCACTttttgaatgcagcataagaaaataaatatattataaatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249558 lncRNA upstream 14939 13459979 ~ 13460490 (+) True G210655
TU249525 lncRNA upstream 30202 13444748 ~ 13445227 (+) False znf653
TU249423 lncRNA upstream 109536 13365684 ~ 13365893 (+) True G210532
TU249234 lncRNA upstream 429596 13044990 ~ 13045833 (+) True G210384
TU249018 lncRNA upstream 654145 12821076 ~ 12821284 (+) True G210209
TU249616 lncRNA downstream 168232 13662174 ~ 13663501 (+) True G210698
TU249611 lncRNA downstream 171574 13665516 ~ 13669551 (+) True G210694
TU249641 lncRNA downstream 201548 13695490 ~ 13695799 (+) True G210719
TU249647 lncRNA downstream 249507 13743449 ~ 13744528 (+) True G210725
TU249617 lncRNA downstream 349031 13842973 ~ 13844571 (+) True G210699
XM_026916251.2 mRNA upstream 16699 13448249 ~ 13458730 (+) True tspan35
XM_026916100.2 mRNA upstream 29743 13435381 ~ 13445686 (+) True znf653
XM_026915989.2 mRNA upstream 45231 13424701 ~ 13430198 (+) True epor
XM_026917166.2 mRNA upstream 52723 13410944 ~ 13422706 (+) False rab3db
XM_026916656.2 mRNA downstream 23654 13517596 ~ 13660239 (+) False nfixb
XM_034310243.1 mRNA downstream 23654 13517596 ~ 13660239 (+) False nfixb
XM_034310241.1 mRNA downstream 23654 13517596 ~ 13660239 (+) False nfixb
XM_034310246.1 mRNA downstream 23654 13517596 ~ 13660239 (+) False nfixb
XM_034310240.1 mRNA downstream 23654 13517596 ~ 13660239 (+) False nfixb
XR_003402925.2 other upstream 1286840 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1897606 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1938264 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 3057548 10372415 ~ 10417881 (+) False G208781
trnar-ucu_8 other downstream 2319300 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2424275 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 2646388 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 3593349 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 4690077 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile