RNA id: XR_004579399.1


Basic Information

Item Value
RNA id XR_004579399.1
length 1757
RNA type misc_RNA
GC content 0.49
exon number 17
gene id zgc:158403
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13464085 ~ 13493942 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTCTTTTCTTCAGTGGGGTGACAGATATATTAAACTAAAGGCTTTAATGCTTTCTGTCGTAAAAAAATAAGCGTGATGTGATGCTTAACACTGGCAGCGTAGCAACCCTGTGCCATTATAGCAGCGATGGAGGTGTTAGCGACTGTTAAAGTGCCTCCTCACTGTCGTGTACTGAGCTCCGTTTTGGCTGATTCAGTTGGTTTGTGCTCCACACAGACGTCCTTAAAGGCATGTCTTGAAGAGTGTATGGAGGCCTTGGATCTGTTCCTCAACAACCACTTCAGCGAGAGTCTGGACAAACTGCAGCCACGATGTAAAGAGAGTATGTATCATGCTCTGATCTACGCTACAGTGTTGGAGATGCAGGCTATGATGACCTTCCAACACGACGACATTGTCAACGCAGGAAACACAATGAAGAGTGCTCAAGAGGTTTGCCAGAGGTTTCGTAAGAGATCTGGCAGTCTGGCAGCCAGAGCAGCAGGAGATGAGTTGTCTGAAGAGGAGCTCCATGCTGAAGCGTGTTATGCCGAATGCTTGCTACAAAGAGCTGCTCTCACATTTTTACAGGATGAGAACATGGTGAGTTTCATTAAAGGTGGAATCAAAGTACGCAATAGCTACCTCATATACAAGGAGCTCCACTCTTTTATTGAGTCACATAGCTCCTTCAAAGGGCCAAATCACAAGCACCTGGAGGGAGGGGTGGCGTTTGGAATTGGTGCTTTCAACTTGACACTTTCCTTGTTCCCTGCACGGATTCTCAAAGTTTTGGAGTTTGCTGGATTTTCTGGGGATAAGgaatatgggCTTTCCCAGCTGTATGAAGGGGCCATCTCCCATAACCTGCGTTCTATGCTATGTGCCCTGCTGCTGCTCTGCTACTACACCTTCCTCTCATTTATTTTAGgGACAGGTGAGGGAGAAGTAGCTGATGCTGAGAATCTGCTGAAACCATTTCGGCTACGATACCCACGTGGGGcgatatttcttttctttgcaggCAGAGTGGAGGAAATAAAAGGCAACATTGATGAGGCAGTGCTGCTGTTTGAGGATGGCTGTAAAGCGCAGCAGGCCTGGAAGCAGTTTCACCACATGTGCTACTGGGAACTGATGTGGTGCTTCACCTACAAGAGGCACTGGAAGATGGCATACTTCTACGCCGACCTGCTCAGCCAGGAAAGCCGCTGGTCCAAGgctatGTACGTGTACATGAAGGCTGCTTGTCTCAGTATGCTGCCAGAAGGGGAGCCTCGGCCATTTGGGGAGAACGAGAGAGAGCTCTTCAGgcAGGTGCCAACCTTCAAACAGAAGATAGCAGGGAAGTCTCCTCCTACAGAGAAGTTTGCTATCCGCAAAGCCCGACGCTACAGAGCCAGCAACCCCATACCCCTCCCTGTTCCTGTGCTTGAGATGATGTATATGTGGAATGGCTTCTCCATGATAAGCAAGCAGCCGGAGCTCACAGCAGGCATACTGGAAACTGTGCTGGAGGCAGAGCAATCCCTGCAGGCTGCTCCCGaatgtgtacagtgtggatgACAGCtgcctgattttgctgttgaAGGGACTGTGTCTGAAGAACCAAAACCGACTGCATGCTGCTGAAGATTGTTTTAACAAAGTTTACAGCAGTGAGAAGAAGTTGAAGTATGACCACTACCTGATTCCTAACACTCTGTTGGAGCTGGGCCTGCTCTACGCTGATACAGGGAGGAGGGATCAAGCCATCAAACTCCTGCAGAAAGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249558 lncRNA upstream 15338 13459979 ~ 13460490 (+) True G210655
TU249525 lncRNA upstream 30601 13444748 ~ 13445227 (+) False znf653
TU249423 lncRNA upstream 109935 13365684 ~ 13365893 (+) True G210532
TU249234 lncRNA upstream 429995 13044990 ~ 13045833 (+) True G210384
TU249018 lncRNA upstream 654544 12821076 ~ 12821284 (+) True G210209
TU249616 lncRNA downstream 169324 13662174 ~ 13663501 (+) True G210698
TU249611 lncRNA downstream 172666 13665516 ~ 13669551 (+) True G210694
TU249641 lncRNA downstream 202640 13695490 ~ 13695799 (+) True G210719
TU249647 lncRNA downstream 250599 13743449 ~ 13744528 (+) True G210725
TU249617 lncRNA downstream 350123 13842973 ~ 13844571 (+) True G210699
XM_026916251.2 mRNA upstream 17098 13448249 ~ 13458730 (+) True tspan35
XM_026916100.2 mRNA upstream 30142 13435381 ~ 13445686 (+) True znf653
XM_026915989.2 mRNA upstream 45630 13424701 ~ 13430198 (+) True epor
XM_026917165.2 mRNA upstream 53122 13410944 ~ 13422706 (+) True rab3db
XM_026917166.2 mRNA upstream 53122 13410944 ~ 13422706 (+) False rab3db
XM_026916656.2 mRNA downstream 24746 13517596 ~ 13660239 (+) False nfixb
XM_034310243.1 mRNA downstream 24746 13517596 ~ 13660239 (+) False nfixb
XM_034310241.1 mRNA downstream 24746 13517596 ~ 13660239 (+) False nfixb
XM_034310246.1 mRNA downstream 24746 13517596 ~ 13660239 (+) False nfixb
XM_034310240.1 mRNA downstream 24746 13517596 ~ 13660239 (+) False nfixb
XR_003402925.2 other upstream 1287239 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1898005 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1938663 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 3057947 10349402 ~ 10417881 (+) False G208781
trnar-ucu_8 other downstream 2320392 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2425367 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 2647480 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 3594441 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 4691169 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile