RNA id: XM_026916843.2


Basic Information

Item Value
RNA id XM_026916843.2
length 880
RNA type mRNA
GC content 0.49
exon number 2
gene id gadd45gip1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13494986 ~ 13498163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCGCTAGTATCCTGTTTGAGACGTACAGACGCACTCTGAAGGACGCAATCAAACATGGCGGCCTCCTTGCTGAGCAGGAGGGGAGTTGCGCTTTTAGCCTTTTCtagtttaaaatcttttatccCTGTTGTTTCTGGGAATAATGTCGTACAGTTGATAGCTGGTTATAACCCGAGACCTCTCAGGCTGAACTTAAAGGAGCCTTACATTCCGGACAGGAACAGTGAAAAGACCCCGGAGTGGCAGAAGACTGAGAAATATGAGCGCAAGCTTTTTGCACGTTATGGCTTTGCCTCCGGAGTGGATCCGGGTAAACTGTGGCCCACTGCCGCCCAGCTGGAGGAATTAATCCAGGAAGAGAAGCAATGGCACCCGCCGCTCGaagaaatgctgaaaaacatCGCGGcgaaggagaaggaaagagcAGAAAAACGGCTGGCGAGagagAAGCTGATTGCTGCAAACATGGCTAAAATGCCCAAGATGATAGCAGACTGGAGGAAGGAGAAGCAGGAAGCAAAGAGAAAGGTGAAGGAGGAAAAGGCCAAAAAGGAGCGGTTGCTGGCTGAGGCTCGGGAGCGTTTCGGCTACGCACTGGACTCGCGCAGTTCCAAGTTCCAGGAGATGCTCGCAGAGATTgaaaaggaggagaagaagaagaggaagctCCTGAAACGTcgaaagagagaagaggaacaGGGGCTGACGACTCCTGCACCGGCTGCTGAATCCTCATAGAGACTCTGGCTGAGGGAATACACAGACTGTTGTATATACTGACATTGTAGTAACGTGTTTGACCATCGTAATGCATTTTGGAAAATCCATCATCATGTCATTAAAAGAACcgtaattaaaatgtaaagccTGATTAATA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402926.2 lncRNA downstream 19524 13463539 ~ 13475462 (-) True LOC113528343
TU249543 lncRNA downstream 48548 13445736 ~ 13446438 (-) True G210640
TU249504 lncRNA downstream 89629 13405139 ~ 13405357 (-) True G210607
TU249469 lncRNA downstream 99576 13390616 ~ 13395410 (-) False elof1
XR_003402958.2 lncRNA downstream 122048 13369454 ~ 13372938 (-) True LOC113528601
TU249602 lncRNA upstream 27218 13525381 ~ 13525580 (-) True G210690
TU249799 lncRNA upstream 93276 13591439 ~ 13637837 (-) False G210858
TU249798 lncRNA upstream 130630 13628793 ~ 13660814 (-) True G210858
TU249797 lncRNA upstream 156871 13655034 ~ 13660814 (-) False G210858
TU249813 lncRNA upstream 165253 13663416 ~ 13663797 (-) True G210871
XM_026917009.2 mRNA downstream 59630 13432227 ~ 13435356 (-) True swsap1
XM_026916221.2 mRNA downstream 99529 13390616 ~ 13395457 (-) True elof1
XM_026917193.2 mRNA downstream 226812 13241850 ~ 13268174 (-) True LOC113528569
XM_026917090.2 mRNA downstream 268111 13223244 ~ 13226875 (-) True nfil3-6
XM_026916922.2 mRNA downstream 274964 13210369 ~ 13220022 (-) False nfil3-2
XM_026916077.2 mRNA upstream 164000 13662163 ~ 13669491 (-) True nme4
XM_026916672.2 mRNA upstream 172746 13670909 ~ 13695259 (-) True xpo6
XM_034309975.1 mRNA upstream 198450 13696613 ~ 13702527 (-) False antkmt
XM_026916113.2 mRNA upstream 198450 13696613 ~ 13702171 (-) False antkmt
XM_026916114.2 mRNA upstream 198450 13696613 ~ 13699995 (-) True antkmt
XR_004579330.1 other downstream 95761 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 668447 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579425.1 other downstream 935773 12548829 ~ 12559213 (-) False tom1
XR_003402937.2 other upstream 506006 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 522085 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 989658 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1022114 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 1180587 14678750 ~ 14690132 (-) False LOC113528445

Expression Profile