RNA id: XM_026916857.2


Basic Information

Item Value
RNA id XM_026916857.2
length 2447
RNA type mRNA
GC content 0.45
exon number 10
gene id pitpnc1a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10230636 ~ 10296123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAgttacactctctctcacatgcacaGCAGACGCGGAGCATCCTGTAACAGcgctgacaaacacacacagcacagcgtTTACATTTCCACCAGTCCGGACGATTAACACACAAAAGTCTGACAAGAAACCAGTGCAAACTGATTGTGTCTTCGCTGGCATTCTACTCAAAACCCTGGCCGTATCCAGAACGGGACAGCCTGCCTGTGATCTGATGAAGAGATCATCCGATAATCATCTCCAGCCTGGGGAGCGCAGATATTTCTGATTTTCTTGTTTCCACCGACAAATGCTTCAACTCAGCAGTGCAGATAAGCTGTGACACTGAACTCAAATCCAacctcattcacacacttacagcAGGAGGAGGATGTTGATGAAGGAATACAGAATATGCATGCCACTCACCGTGGAAGAGGATTGGGCAGCTGTACATGATCAGCAAACACAGCCACGAGCAGAGTGAGCGAGGCGAGGGCGTGGAGGTGGTGCAGAACGAGCCATTTGAGGACCCCACATACGGTGCTGGCCAGTTCACCGAGAAACGCGTCTATCTCAACAACAAGCTGCCCAGCTGGGCACGAGCAGTCGTTCCCAAGATCTTCTATGTAACGGAGAAGGCATGGAACTATTACCCCTACACAGTCACTGAGTACACATGTTCTTTCTTGCCAAAGTTTTCCATACACATAGAGACAAAATATGAGGACAACAACGGCAGCAATGACAATATCTTTGACGAGCCCAGAAATGAGGACACTGAGGTGTGTTTCGTTGACATCGCGTATGATGAAATCCCAGAGCGCTACTACAAAGAATCTGAGGACCTGCGCTACTTTAAGTCAGAGAAGACAGCACGGGGTTTGCTGCAGGAGGGCTGGAGAGACACTCAGGACCCCATCATGTGCTCCTATAAGCTGGTGACGGTGAAGTTTGAGGTGTGGGGCCTGCAGACACGTGTGGAGCAGTTTGTTCACAAggTGATAAGGGACGTGTTGTCGCTAGGTCACAGACAGGCCTTTGCCTGGGTGGATGAGTGGATTGACATGACAatggaggaggtgagagagtaCGAGCGTGCCACGCAAGAAGCCACCAATAAGAAGCTAGGCACATTTCCCCCTGCCATCTCCATCAGCGAGACGCCCCTGACATCCTGCGCCCACAGCGGACCATCCAGTGCCCCCTCCACCCCCCTCTCCACAGAAGCCCCAGACTTCCTCTCTGTGCCCAAAGACAGACCGCGGAAGAAATCAGCACCAGAGACACTCACACTCCCCGATCCGGCGAGGAGAGACTCCAGTTATCGGCTACCGAGCCTCTTCTCCTGGGGCTCCAGCTCCCGTCAGCCTGAATGACCCACACAGAGAAGAGCCCAAGTTCAGTAATGCAGCTGTCAGAATGGTGTCTgctaggcacacacacacacagcaagccAGTCTCTGTTTAAACTaggagagagacacaaacacacacgcaaagtGGATTTCCAACCTCACCAAGCTGAAACTCTACACAGGGGTTCAGTCGAGATCTTATCTACAGTCAAAAAGCGCATTCCAACTTTCCAAAAGCAACGTAGTTCACAGTTTACAATAACTCAGGAGTTCTTCAGTTGTGTtacgtttttttaaaaaattcttctaGTTGTGTAGTTTTGTTATTTCAGACGGATTGACTGTGTGTGCTATTCGAGGTGgaatatacaaaataaagacaAGCTTCTGCTTTTAATAGGAGAGAACCTGATCCACTTTCTTAATACTGTTtcaacattttcaacatttcagTGTTCTTTTGAGTAGATACTGGTGTTTTGGTTTTTAGTTTGGTTAACTGACTGGATTGGCACCGCTGTCCAGTAAAAAAGGTCACAGTATTGCTGAGTATTATAATAAATGTACTACACTTCATAAGAATGCTTCTATTTAGGATTGGACTGATTCTGCAAAGCAGAAAAAATGCTCCTTATTCCTAACAATAGTGTCAGAGCTGAAAACCACTGGACCTACTGTTGTGTCTCAGTCTATTGCTGGATATGTGGACTGCCAAGTtcctgtatatactgtatcttattACCATACTAAATTGTCATCTATTATTCATTAACACGTTACCATTTATGATAAAGGGTAACTGAGTATATTGTATTTTACATGTTATTTCCCTGGTTTAACAGTATGTGGTGCATTACAATATGTAAATAGAAAATCACGTTTGCAAGGAATGCTTTCCAGGATGTCTTGAATGCTATATAGTCTTCATGTGCAAAGGAATGCTTGCTGTTGGACAATGTGTACTTTGTGAATATAAAGGCTTGTTGCTTTCGATAGTTCATACAAATCAGTTTCCTTCTTTTCTAAGAGATGCCAGCATCAAGAACATGGTCATATGAAATCAATTATTTGATGTAAACAGCTGGTatgaaaataaagctttaaCTCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247295 lncRNA downstream 43384 10187036 ~ 10187252 (-) True G208758
TU247174 lncRNA downstream 164280 10063977 ~ 10066356 (-) True G208649
TU247080 lncRNA downstream 302728 9877627 ~ 9927908 (-) True LOC117599011
TU247137 lncRNA downstream 313107 9914907 ~ 9917529 (-) True G208613
TU247084 lncRNA downstream 347439 9858759 ~ 9883197 (-) False LOC117599011
TU247529 lncRNA upstream 45788 10341911 ~ 10342222 (-) True G208951
TU247554 lncRNA upstream 151613 10447736 ~ 10450540 (-) True G208964
TU247571 lncRNA upstream 222219 10518342 ~ 10518947 (-) True G208980
TU247589 lncRNA upstream 337412 10633535 ~ 10634150 (-) True G208998
TU247803 lncRNA upstream 792890 11089013 ~ 11144984 (-) True G209189
XM_034310094.1 mRNA downstream 1237 10223395 ~ 10229399 (-) False dxo
XM_026916901.2 mRNA downstream 1822 10223395 ~ 10228814 (-) True dxo
XM_026916019.2 mRNA downstream 17225 10209348 ~ 10213411 (-) True anks4b
XM_026917246.2 mRNA downstream 23422 10197508 ~ 10207214 (-) True si:ch211-256e16.3
XM_026917296.2 mRNA downstream 45535 10146848 ~ 10185101 (-) True mosmoa
XM_026917043.2 mRNA upstream 49142 10345265 ~ 10355473 (-) True cacng1b
XM_026916162.2 mRNA upstream 64063 10360186 ~ 10373055 (-) True cacng4b
XM_026916003.2 mRNA upstream 85070 10381193 ~ 10384307 (-) False aimp2
XM_026916002.2 mRNA upstream 85070 10381193 ~ 10384306 (-) True aimp2
XM_026916204.2 mRNA upstream 107657 10403780 ~ 10407080 (-) True pvalb8
XR_004579397.1 other downstream 499386 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 756158 9466480 ~ 9474478 (-) False copz2
TU246803 other downstream 811052 9409804 ~ 9419584 (-) False prr15la
trnac-gca_22 other upstream 88926 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 155373 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1136387 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1240437 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1269887 11566010 ~ 11566128 (-) True LOC113528658

Expression Profile