Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026916863.2 |
| length | 956 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC113528352 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 10192804 ~ 10195206 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0005730 | nucleolus | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K12845 | SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU246973 | lncRNA | upstream | 130839 | 10039409 ~ 10061965 (+) | False | G208488 |
| TU246974 | lncRNA | upstream | 130839 | 10039409 ~ 10061965 (+) | True | G208488 |
| TU246978 | lncRNA | upstream | 130839 | 10039409 ~ 10061965 (+) | False | G208488 |
| TU246996 | lncRNA | upstream | 309677 | 9864977 ~ 9883127 (+) | True | G208504 |
| TU247001 | lncRNA | upstream | 333922 | 9846084 ~ 9858882 (+) | True | G208507 |
| TU247237 | lncRNA | downstream | 26077 | 10221283 ~ 10221539 (+) | True | G208700 |
| TU247238 | lncRNA | downstream | 30377 | 10225583 ~ 10226503 (+) | True | G208701 |
| TU247342 | lncRNA | downstream | 146702 | 10341908 ~ 10342224 (+) | True | G208783 |
| TU247330 | lncRNA | downstream | 177209 | 10372415 ~ 10417881 (+) | False | G208781 |
| TU247335 | lncRNA | downstream | 177209 | 10372415 ~ 10781459 (+) | False | G208781 |
| XM_026916700.2 | mRNA | upstream | 205031 | 9944306 ~ 9987773 (+) | True | rapgefl1 |
| XM_026916963.2 | mRNA | upstream | 266601 | 9917962 ~ 9926203 (+) | True | casc3 |
| XM_026917260.2 | mRNA | upstream | 275703 | 9912768 ~ 9917101 (+) | False | msl1a |
| XM_026917258.1 | mRNA | upstream | 275703 | 9912865 ~ 9917101 (+) | True | msl1a |
| XM_026916952.2 | mRNA | upstream | 299308 | 9886784 ~ 9893496 (+) | True | si:dkey-225f5.4 |
| XM_026916903.2 | mRNA | downstream | 19839 | 10215045 ~ 10222874 (+) | True | LOC113528384 |
| XM_026916301.2 | mRNA | downstream | 103681 | 10298887 ~ 10341715 (+) | True | helz |
| XM_026916197.2 | mRNA | downstream | 230853 | 10426059 ~ 10448685 (+) | True | lmtk2 |
| XM_026916198.2 | mRNA | downstream | 230853 | 10426059 ~ 10448685 (+) | False | lmtk2 |
| XM_026916762.2 | mRNA | downstream | 280148 | 10475354 ~ 10484206 (+) | True | bri3 |
| XR_003402918.2 | other | upstream | 212850 | 9944306 ~ 9979954 (+) | False | rapgefl1 |
| TU246534 | other | upstream | 1129489 | 9061565 ~ 9063315 (+) | False | nupr1b |
| XR_003402909.1 | other | upstream | 1290127 | 8896618 ~ 8902677 (+) | True | LOC113528069 |
| trnas-cga_1 | other | upstream | 2184537 | 8008186 ~ 8008267 (+) | False | trnas-cga_1 |
| TU245701 | other | upstream | 2339295 | 7853191 ~ 7853509 (+) | True | G207480 |
| TU247340 | other | downstream | 154196 | 10349402 ~ 10417881 (+) | False | G208781 |
| TU247338 | other | downstream | 177209 | 10372415 ~ 10417881 (+) | False | G208781 |
| TU247339 | other | downstream | 217778 | 10412984 ~ 10417881 (+) | True | G208781 |
| XR_003402977.1 | other | downstream | 1341841 | 11537047 ~ 11537165 (+) | True | LOC113528662 |
| XR_004579334.1 | other | downstream | 1371913 | 11567119 ~ 11577823 (+) | False | luc7l3 |
