RNA id: XM_026916866.2


Basic Information

Item Value
RNA id XM_026916866.2
length 2428
RNA type mRNA
GC content 0.50
exon number 11
gene id snrnp70
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3891174 ~ 3901444 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCACCGCGCCATTTTAAGAGTGAGCGCTGCACGGAGAACAAGAAAGCCAACGCAGGAGGACGCGTTTCAGTCGTTTAATCAGCGGCACCCAATCAGTAAAATTGTTCTGGGAAAATACTTCAGAAAATTAGGGAGAATTTTTTACCGTCGAGCTCGGAGATTCCCTTTGGTGTTGAATGCGGAGCTGAGGTGAACAATGACTCAGTTTCTGCCCCCGAACCTGCTGGCCCTGTTTGCCCCGCGGGATCCCATCCCGTTCCTGCCGCAGCTGGAGAAACTTCCCCATGAAAAGCACCACAACCAGCCTTACTCCGGCATCGCTCCTTTCATCAAGCACTTCGAGGATCCTCGAGATGCACCGCCACCAACAAGAGCTGAAACACGAGAGGAGAGGCTGGAAAGAAAGAGGCGCGAGAAGATGGAGAGGAGGCAAACGGTTGTAGAAACCGAGCTGAAGTTGTGGGATCCTCACAACGACACGAACGCTCAAGGGGACGCTTTCAAGACCTTATTCGTGGCTCGAATTAATTACGATACTACGGAGTCCAAACTGCGCCGTGAGTTTGAGGTCTACGGCCCCATCAAACGAATCTACATTGTGTACAACAAGAGGACTGGAAAGCCACGCGGCTACGCTTTCATCGAGTATGAACACGAGCGAGACATGCACTCGGCCTACAAGCATGCGGACGGTAAAAAGATCGATGGGCGTAGAGTTCTTGTGGATGTAGAGAGAGGTCGCACCGTGAAGGGATGGCACCCTCGTCGGCTGGGTGGAGGTCTGGGTGGTACTAGGAGAGGTGGAGCAGATGTTAACATCAAACATTCTGGTAGAGATGACACCTCCCGCTATGATGACCGACCTattggaagCGATCGGGATCGTGACCGTGGAGATCGGCGCGAGCGAAGTCGCGAACGCGACAGAGACAAGGAGCGCCCTGAGCGGCGGCGATCTCGCTCACGGGAGAGGCGCAGACGCACCCGATCACGTGAGCGTGAAAGGGCACTGGGGGGAGGCACGGATGAAAATGCCGGCCGGCGtagggacagagacagggagagaggagaaggagacGCCAAGTCACGCGAAAGAAGCCGAGAGCGCGACCGGGAACGAGATCGcaagaggaggagcaggagcagggagaggaggagggacAGGGAGCGAGGGAAGGGCGCAGAGGGAGGTGAAGAGGGCACAGGCGGACTGACTGATGGCATGATGGGAGAAGGAGGAGAGCGAGGGATGGACGAGTCTGCCATGGGTGAGCAGGGTCGCGGAGAGGAGGGAGGACCAGAGGGAGAAGAGCGAggcagagatagagacagagagagggacagagaccGGGACAGGAAGCGTAGTCACAGAGATAAAGatagagacagggacagagaaagGAGGCGGGACAGAGACCGGGACAGAGATCGTGAGCATAAGCGGGACAGGGGTGATCGTGAGCGTAGAGAGGATCGGCATGGCTCTCTGCTTCCCCCTATGGGTGAGAATGAAGGCTTGGGGAACGGAGAAGAAGGGGACGGCTCTCTCCCGCCGCAGATGGAGGAAGGTTCACAGGATGGGATGAATGCGATGATGATGGACCAGGACTCCATGCAGTCTGGAGATGGCTATGCTTCTAACGAGAACGGCTACAAGATGGAGGCCCAGGGTGATGAGTACTAAACGCTTTGGGCACGGTCTTCATgtgcagaaattaaaaaaaaaaaaaaaattaatttcctcTGACCGTTTCTATCCATGTGGTGAGGAATTAATGAGTGTCTATTCAGTCAGCCTTGTCAGAGCATGATCTGTCCACCATGAGCCATGTCCTCCAGGCTGAAATAGGAATAGCTGAACtgtgatttatatatatttttttttaatgccaccAAATAGTTTTGGCAAGGATTAACTAAAAAAATGGTGCATTGAAAGATTCCTGTATTAGTTTAACCCTTCAACtgttgtgctgtatttttgtaagAACAACACTGCAGTATAAAATCGTTATTTGATTACAGGGATTGTCGTACTGAGTTCCAGAGTTGTGTCCAATTTATctgtatttctctttattaatcAACTCCAAGCCTCCTTTCAAGGTAAGATGTGTTTAAGGTGGATGATTTTGAAAGGTATCCCAAGTGCGATGTTTCAGAGGCTTCATCATGTACAGCTTGGTCCTGATTTTCCACTTTGTGGCTCATAAGCaatggagggggaaaaaaaagacaaattagtGCTTTTAGCTGAGAATATGTTGCCATAGGTTCACAACAGGTTGCTCTTATTCTTTTGTAATTAGTCTTATTTGTTTGAAAAGAGTATGGATGCTTTGTGAACCACCTCTTCTAGTGACATTTGTTTTGGGGTTCTGTATTGTGAATTGGTTCTCTTTAATAAATGCGCTTTTTTTATGAAAA

Function

GO: NA

KEGG:

id description
K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242898 lncRNA downstream 114724 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA downstream 114724 3768855 ~ 3776450 (-) False kcnc3a
TU242874 lncRNA downstream 152215 3704283 ~ 3738959 (-) True G205063
TU242844 lncRNA downstream 259791 3630694 ~ 3631383 (-) True G205040
TU242834 lncRNA downstream 271055 3617171 ~ 3620119 (-) True G205030
TU242970 lncRNA upstream 47405 3948849 ~ 3957710 (-) False G205145
TU242972 lncRNA upstream 47405 3948849 ~ 3957710 (-) True G205145
TU242974 lncRNA upstream 47405 3948849 ~ 3957710 (-) False G205145
XR_004579371.1 lncRNA upstream 88962 3990406 ~ 3990917 (-) True LOC117598833
TU243002 lncRNA upstream 132452 4033896 ~ 4035077 (-) True G205169
XM_034309839.1 mRNA downstream 2703 3882128 ~ 3888471 (-) True lin7b
XM_034309837.1 mRNA downstream 11294 3868579 ~ 3879880 (-) False zgc:193811
XM_026916275.2 mRNA downstream 11294 3868579 ~ 3879880 (-) True zgc:193811
XM_034309838.1 mRNA downstream 11294 3874105 ~ 3879880 (-) False zgc:193811
XM_034309832.1 mRNA downstream 25325 3792584 ~ 3865849 (-) False kcnc3a
XM_034310039.1 mRNA upstream 3343 3904787 ~ 3907427 (-) True pex11a
XM_034310036.1 mRNA upstream 16228 3917672 ~ 3932820 (-) False strada
XM_026916870.2 mRNA upstream 16228 3917672 ~ 3932820 (-) False strada
XM_026916868.2 mRNA upstream 16228 3917672 ~ 3932820 (-) True strada
XM_034310037.1 mRNA upstream 16228 3917672 ~ 3932813 (-) False strada
XR_004579380.1 other downstream 477407 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 477407 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 477407 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 734465 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 735744 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 139037 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 191469 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 820973 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 826650 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1187892 5089336 ~ 5091922 (-) False G205633

Expression Profile