RNA id: XM_026916870.2


Basic Information

Item Value
RNA id XM_026916870.2
length 2689
RNA type mRNA
GC content 0.48
exon number 12
gene id strada
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3917672 ~ 3932820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCATGCGCACTGTTGCGCGGGATGTgacgcgcatgcgcagtgcagACCACAGGACGCAGCTTGGGGAAGTGACAGGAGGAGGGTAAACAGACGAAATTAAACGCTTTCTGTTTAATTAACCCAATCTCATTAGACGAAACCTGCGCACTCGAGTACTTCCTCTACCTCAGGAataTTTACATTGAATGTCATTTGGATGGTGTAGACGCTCATCATATTTAGGATCCATGTCTTTTTTGcgTTGGGTGTCGGAGAAACTGAGTGTGGAGAGTCTGAGGGATTTGGACTTATTTGGTGGCCCATGAGGACAGTCAGGAATCTCTGAGCTCCCTCCCACGCCGGGACACAATGGGAACCTTCTTACCTGACAGCAGTGCCTACGAGCTCCTCACCGTCATCGggcacGGTCTGGAAGACCTGATGACAGTGAACTTGGCCCGTTACAAACCGACCGGAGAACGTGTCACCATCCGAAGGATTGACATGGAGTCCTGCACCAACGACATGGTCAAATACCTGCAGGAAGAAATCCATGTCTCAAAGTTGTTCCACCATCCAAGCATCCTCCCATACAAGAGCATCTTCATCTCAGAGAACGAGTTATGGGTGATCACACCATTCATGGCCTACGGCTCAGCACGAGATTTGATCAGCACTCACTTCACACACGGTTTAAGTGAGCTGACCATCGCGTACATTCTGCTTGGAGTTCTGCGGGCTCTGGAGTACATTCATCACAACGGCTATGTGCACCGGAGTGTGAAGGCCAGTCATATCCTGATCTCAGCGGATGGACAGGTGTATCTGTCAGGTCTGAGGAGCATCTTCAGTCTGATCCGACACGGCCAGAGAGCACGCGTGGTGCACGACTTCCCCCAATACAGTGTTAAAGTGCTGCCCTGGCTCAGCCCTGAGGTGCTACAGCAGAATCTTCAGGGATACGATTTCCGCTCGGACATCTACAGTCTGGGAATTACGGCTTGTGAGCTAGCCAATGGCCATGTGCCGTTTAAAGACATGCCAGCTACACAGaTGTTGTTGGAGAAGCTAAACGGTACAGTCCCGTGTCTGTTGGACAGCAACACCATCCCGGCGGAGGAGCTCGGTATGAAGTCTTCGCGCTCGGGGGCCGACTCCGGGATCTGCGAGGGCCCCGGGGCCGGTGGGGCGCGCCATACTAACGGAGAGCCGAACCCCTACAGCAGGACGTTCAGCCCACACTTCCACAACTTCGTCGAGCTCTGCCTGCAGAGGGACCCTGAGAAGAGGCCTTACGCcagcgctctgattggtcactcCTTCTTCAAGCAGataAAGCGGCGTCTGTGCGAGGCCCTGCCCGAGCTGCTGCGTCCCGTCTCGCCGCTCGGCAGCTTCGAGTGTGTGCGGCCTCAGGATCCGCCCTCGGCGCTCGCCAGCCTGGAGTCCGGCCTCAGCCACCTGGACGTAGACGACTGGGACTTTTGACAGGAACTGAATGGATGAGGAGATGAAGCTTGTGGGTATTTGGAGATGTAGATAAAACGATAACTTGTTCCTGACATGTTTGGGTTGTATTGTTGGGATTAGTGGTGTGTACATCTGACGTAGGGCTGGCCGATAAAATATCagtatcatgataaattaagaaCAGTATTGTCTTTATCCCTCTTTAATGATGAAGGAATTTTGTCCAAAACATCCTTTTTTCACTCAAAAATTTATGTACtaggtttattttttactaaatcCACCGCCATTAGtgatacttttttaaaaaatattttttgtggcACGACTGACTTCTGACATTTTCGCCAAACTCCTGAGCAAAACCAAATATCGTGACGTCCTATCAAGCCTTgaagtatcgtgatatgatattttttgtatcatatcgcccacccctattaggatgtgtttgtttgttaatgagGGTTTAAGAGATCCAGTTCTCCTTTTTTTTCGAACTGTATGTATATAGTCGTGTATATAACAGAAACGGGTTGAAGGAGGACTGTTTTACTTTTATATCTCTCACAGAGAGGTGCAAAGCCAGCAGCCGCCGCAGCCTTGTCCGAACGACGACACACACGAGGTGCATGAGTCTGAAAACATACACaattacattttcacaaaggCAGGTGCTTAGTTTTGTGCACTCTAACGTTACTGAGCATTGTTACATGTTTTGTAGCATAATAATCCAAGCATAAATGAGACGCTCTGAATGTGTAATAGCTTAGTGCTGCTTGCATGAGGGCCGCGACTGGTTTACGTGGATGAAATGAAGCTGCATGGCCCACCGTGCCAGCACGTTTATCTCCGAATGTGAATTTAGCGATATTTTGAGAGTTATTCGAGATTCATAACTTTTTACTCAAACTACCAGCAGAACGTTAGCTAATATACAGGCGGGTGTGGGAAATGCAGAAACGtcagcagttataaacagatCCTTAAGGTCAACACAGGACGTTTTTACATCTCCTTCGTCATGCACAAGATCCGTTTCAGTTTCTGACACTGTTTCTGCACCCAGCGTTCTCACCCTGACCTTCAGCTGCATCATGCATCTTATTCCAGTGTTTTCTTCGAGTTTCATGTCAGTTAGCGCGAAGCCGTGACGTTGGAAACTTCAGCTGTGCGTATGTGGAGTTTTTCCAGATGTTGCATAATGAGATGAAAACAATAAAGACTAAAAACTCA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242898 lncRNA downstream 141222 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA downstream 141222 3768855 ~ 3776450 (-) False kcnc3a
TU242874 lncRNA downstream 178713 3704283 ~ 3738959 (-) True G205063
TU242844 lncRNA downstream 286289 3630694 ~ 3631383 (-) True G205040
TU242834 lncRNA downstream 297553 3617171 ~ 3620119 (-) True G205030
TU242970 lncRNA upstream 16029 3948849 ~ 3957710 (-) False G205145
TU242972 lncRNA upstream 16029 3948849 ~ 3957710 (-) True G205145
TU242974 lncRNA upstream 16029 3948849 ~ 3957710 (-) False G205145
XR_004579371.1 lncRNA upstream 57586 3990406 ~ 3990917 (-) True LOC117598833
TU243002 lncRNA upstream 101076 4033896 ~ 4035077 (-) True G205169
XM_034310039.1 mRNA downstream 10245 3904787 ~ 3907427 (-) True pex11a
XM_026916866.2 mRNA downstream 16228 3891174 ~ 3901444 (-) True snrnp70
XM_034309839.1 mRNA downstream 29201 3882128 ~ 3888471 (-) True lin7b
XM_026916275.2 mRNA downstream 37792 3868579 ~ 3879880 (-) True zgc:193811
XM_034309824.1 mRNA upstream 177013 4109833 ~ 4117643 (-) True dcaf7
XM_034310221.1 mRNA upstream 219239 4152059 ~ 4192591 (-) False mylk5
XM_034310219.1 mRNA upstream 219239 4152059 ~ 4191953 (-) False mylk5
XM_026916960.2 mRNA upstream 219239 4152059 ~ 4191952 (-) True mylk5
XM_034310220.1 mRNA upstream 219239 4152059 ~ 4189551 (-) False mylk5
XR_004579380.1 other downstream 503905 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 503905 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 503905 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 760963 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 762242 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 107661 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 160093 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 789597 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 795274 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1156516 5089336 ~ 5091922 (-) False G205633

Expression Profile